data_CFD
# 
_chem_comp.id                                    CFD 
_chem_comp.name                                  "(2R,3E,5R)-5-amino-2,4-dimethylhex-3-enal" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C8 H15 N O2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2008-12-17 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        157.210 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     CFD 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   Y 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        2KBU 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
CFD N    N    N 0 1 N N N Y Y N 11.696 2.887 0.460  3.019  1.405  0.083  N    CFD 1  
CFD CA   CA   C 0 1 N N R N Y N 12.840 3.738 0.744  2.433  0.139  0.543  CA   CFD 2  
CFD C    C    C 0 1 N N N N Y Y 10.772 7.769 1.740  -2.254 0.471  0.049  C    CFD 3  
CFD O    O    O 0 1 N N N N Y Y 10.303 8.712 2.375  -1.945 1.450  0.687  O    CFD 4  
CFD CB2  CB2  C 0 1 N N N N N N 13.944 2.903 1.398  3.387  -1.012 0.217  CB2  CFD 5  
CFD CB1  CB1  C 0 1 N N N N Y N 12.453 4.937 1.606  1.116  -0.088 -0.154 CB1  CFD 6  
CFD CG1  CG1  C 0 1 N N N N Y N 12.665 6.186 1.108  0.031  -0.296 0.549  CG1  CFD 7  
CFD CG2  CG2  C 0 1 N N N N N N 11.777 4.659 2.948  1.048  -0.075 -1.660 CG2  CFD 8  
CFD CD   CD   C 0 1 N N R N Y N 12.279 7.473 1.831  -1.261 -0.645 -0.145 CD   CFD 9  
CFD CE   CE   C 0 1 N N N N N N 13.088 8.643 1.254  -1.824 -1.938 0.447  CE   CFD 10 
CFD H    HN   H 0 1 N N N Y Y N 10.974 3.431 0.033  3.871  1.612  0.583  H    CFD 11 
CFD HA   HA   H 0 1 N N N N Y N 13.234 4.124 -0.207 2.271  0.182  1.620  HA   CFD 12 
CFD H1G1 H1G1 H 0 0 N N N N Y N 13.136 6.271 0.140  0.061  -0.217 1.625  H1G1 CFD 13 
CFD HD   HD   H 0 1 N N N N Y N 12.543 7.364 2.893  -1.075 -0.784 -1.210 HD   CFD 14 
CFD H2   HNA  H 0 1 N Y N Y Y N 11.972 2.153 -0.161 3.178  1.389  -0.913 H2   CFD 15 
CFD HB2  HB2  H 0 1 N N N N N N 14.811 3.545 1.614  4.340  -0.849 0.721  HB2  CFD 16 
CFD HB2A HB2A H 0 0 N N N N N N 13.568 2.468 2.336  2.953  -1.952 0.557  HB2A CFD 17 
CFD HB2B HB2B H 0 0 N N N N N N 14.247 2.096 0.715  3.549  -1.056 -0.860 HB2B CFD 18 
CFD HG2  HG2  H 0 1 N N N N N N 11.559 5.611 3.453  1.126  -1.095 -2.036 HG2  CFD 19 
CFD HG2A HG2A H 0 0 N N N N N N 10.839 4.110 2.779  0.100  0.358  -1.977 HG2A CFD 20 
CFD HG2B HG2B H 0 0 N N N N N N 12.447 4.055 3.578  1.870  0.521  -2.055 HG2B CFD 21 
CFD HE   HE   H 0 1 N N N N N N 14.162 8.417 1.326  -2.010 -1.799 1.512  HE   CFD 22 
CFD HEA  HEA  H 0 1 N N N N N N 12.815 8.793 0.199  -2.759 -2.191 -0.055 HEA  CFD 23 
CFD HEB  HEB  H 0 1 N N N N N N 12.867 9.558 1.823  -1.106 -2.746 0.306  HEB  CFD 24 
CFD OXT  OXT  O 0 1 N Y N N Y Y ?      ?     ?      -3.482 0.378  -0.484 O1   CFD 25 
CFD HXT  HXT  H 0 1 N Y N N Y Y ?      ?     ?      -4.084 1.119  -0.333 H1   CFD 26 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
CFD N    CA   SING N N 1  
CFD N    H    SING N N 2  
CFD N    H2   SING N N 3  
CFD HA   CA   SING N N 4  
CFD CA   CB2  SING N N 5  
CFD CA   CB1  SING N N 6  
CFD C    CD   SING N N 7  
CFD C    O    DOUB N N 8  
CFD CB2  HB2  SING N N 9  
CFD CB2  HB2A SING N N 10 
CFD CB2  HB2B SING N N 11 
CFD CG1  CB1  DOUB N E 12 
CFD CB1  CG2  SING N N 13 
CFD H1G1 CG1  SING N N 14 
CFD CG1  CD   SING N N 15 
CFD CG2  HG2  SING N N 16 
CFD CG2  HG2A SING N N 17 
CFD CG2  HG2B SING N N 18 
CFD CE   CD   SING N N 19 
CFD CD   HD   SING N N 20 
CFD CE   HE   SING N N 21 
CFD CE   HEA  SING N N 22 
CFD CE   HEB  SING N N 23 
CFD C    OXT  SING N N 24 
CFD OXT  HXT  SING N N 25 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
CFD SMILES           ACDLabs              10.04 "O=CC(\C=C(/C)C(N)C)C"                                                                      
CFD InChI            InChI                1.06  "InChI=1S/C8H15NO2/c1-5(7(3)9)4-6(2)8(10)11/h4,6-7H,9H2,1-3H3,(H,10,11)/b5-4+/t6-,7-/m1/s1" 
CFD InChIKey         InChI                1.06  LUYKEALMMZKHMP-XIMOZBJHSA-N                                                                 
CFD SMILES_CANONICAL CACTVS               3.385 "C[C@@H](N)/C(C)=C/[C@@H](C)C(O)=O"                                                         
CFD SMILES           CACTVS               3.385 "C[CH](N)C(C)=C[CH](C)C(O)=O"                                                               
CFD SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@H](/C=C(\C)/[C@@H](C)N)C(=O)O"                                                         
CFD SMILES           "OpenEye OEToolkits" 2.0.7 "CC(C=C(C)C(C)N)C(=O)O"                                                                     
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
CFD "SYSTEMATIC NAME" ACDLabs              10.04 "(2R,3E,5R)-5-amino-2,4-dimethylhex-3-enal"                 
CFD "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(~{E},2~{R},5~{R})-5-azanyl-2,4-dimethyl-hex-3-enoic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
CFD "Create component"   2008-12-17 RCSB 
CFD "Modify descriptor"  2011-06-04 RCSB 
CFD "Modify backbone"    2023-11-03 PDBE 
CFD "Other modification" 2024-06-28 PDBE 
CFD "Modify PCM"         2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            CFD 
_pdbx_chem_comp_pcm.modified_residue_id                ? 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Non-standard residue" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain and backbone" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               ? 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   ? 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
