data_CLD
# 
_chem_comp.id                                    CLD 
_chem_comp.name                                  "D-PARA-CHLOROPHENYL-1-ACTEAMIDOBORONIC ACID ALANINE" 
_chem_comp.type                                  "D-PEPTIDE LINKING" 
_chem_comp.pdbx_type                             ATOMP 
_chem_comp.formula                               "C13 H19 B Cl N2 O6" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    -1 
_chem_comp.pdbx_initial_date                     1999-07-08 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        345.564 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     CLD 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        ? 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        1AVT 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  EBI 
_chem_comp.pdbx_pcm                              N 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
CLD N    N    N  0  1 N N N N N N 16.890 4.048 26.563 3.592  -1.157 -1.818 N    CLD 1  
CLD CA   CA   C  0  1 N N S N N N 17.876 3.000 26.298 3.632  -1.240 -0.352 CA   CLD 2  
CLD CB   CB   C  0  1 N N N N N N 18.348 3.044 24.839 2.219  -1.062 0.207  CB   CLD 3  
CLD OB3  OB3  O  0  1 N N N N N N 17.413 2.478 23.945 1.753  0.257  -0.085 OB3  CLD 4  
CLD C    C    C  0  1 N N N N N N 19.089 3.212 27.201 4.170  -2.586 0.060  C    CLD 5  
CLD O    O    O  0  1 N N N N N N 19.782 2.257 27.540 4.150  -3.509 -0.718 O    CLD 6  
CLD OXT  OXT  O  0  1 N Y N N N N 19.369 4.478 27.523 4.673  -2.758 1.293  OXT  CLD 7  
CLD N9   N9   N  0  1 N N N N N N 15.258 3.043 21.258 0.902  2.821  0.524  N9   CLD 8  
CLD C8   C8   C  0  1 N N S N N N 15.504 2.716 22.661 -0.091 1.813  0.145  C8   CLD 9  
CLD C7   C7   C  0  1 N N N N N N 14.385 3.002 23.689 -1.368 2.023  0.961  C7   CLD 10 
CLD C1   C1   C  0  1 Y N N N N N 13.026 2.421 23.323 -2.389 0.985  0.571  C1   CLD 11 
CLD C2   C2   C  0  1 Y N N N N N 12.313 2.904 22.224 -2.436 -0.223 1.240  C2   CLD 12 
CLD C3   C3   C  0  1 Y N N N N N 11.071 2.366 21.864 -3.373 -1.175 0.883  C3   CLD 13 
CLD C6   C6   C  0  1 Y N N N N N 12.459 1.381 24.065 -3.282 1.245  -0.452 C6   CLD 14 
CLD C5   C5   C  0  1 Y N N N N N 11.217 0.836 23.719 -4.216 0.292  -0.814 C5   CLD 15 
CLD C4   C4   C  0  1 Y N N N N N 10.531 1.334 22.614 -4.263 -0.918 -0.144 C4   CLD 16 
CLD CL4  CL4  CL 0  0 N N N N N N 8.949  0.676 22.109 -5.440 -2.113 -0.593 CL4  CLD 17 
CLD OB1  OB1  O  0  1 N N N N N N 16.227 4.725 23.770 0.541  0.145  1.786  OB1  CLD 18 
CLD OB2  OB2  O  0  1 N N N N N N 17.415 3.787 21.760 -0.314 -0.583 -0.143 OB2  CLD 19 
CLD B    B    B  -1 1 N N N N N N 16.854 3.515 23.130 0.493  0.355  0.437  B    CLD 20 
CLD C10  C10  C  0  1 N N N N N N 15.440 2.169 20.273 1.616  3.455  -0.427 C10  CLD 21 
CLD O10  O10  O  0  1 N N N N N N 16.560 1.941 19.816 1.505  3.125  -1.589 O10  CLD 22 
CLD C11  C11  C  0  1 N N N N N N 14.218 1.686 19.485 2.553  4.573  -0.047 C11  CLD 23 
CLD H    1HN  H  0  1 N N N N N N 16.576 4.018 27.533 4.520  -1.381 -2.147 H    CLD 24 
CLD H2   2HN  H  0  1 N Y N N N N 16.105 3.999 25.912 2.985  -1.898 -2.135 H2   CLD 25 
CLD HA   HA   H  0  1 N N N N N N 17.397 2.012 26.497 4.279  -0.454 0.039  HA   CLD 26 
CLD HB2  1HB  H  0  1 N N N N N N 18.612 4.084 24.535 2.234  -1.212 1.286  HB2  CLD 27 
CLD HB3  2HB  H  0  1 N N N N N N 19.348 2.563 24.728 1.552  -1.793 -0.252 HB3  CLD 28 
CLD HXT  HXT  H  0  1 N Y N N N N 20.123 4.609 28.084 5.018  -3.622 1.558  HXT  CLD 29 
CLD HN9  HN9  H  0  1 N N N N N N 14.932 3.956 20.940 1.045  3.033  1.460  HN9  CLD 30 
CLD H8   H8   H  0  1 N N N N N N 15.587 1.604 22.671 -0.318 1.908  -0.917 H8   CLD 31 
CLD H71  1H7  H  0  1 N N N N N N 14.693 2.657 24.703 -1.141 1.928  2.023  H71  CLD 32 
CLD H72  2H7  H  0  1 N N N N N N 14.300 4.098 23.875 -1.767 3.018  0.762  H72  CLD 33 
CLD HC2  H2   H  0  1 N N N N N N 12.739 3.727 21.627 -1.741 -0.424 2.042  HC2  CLD 34 
CLD H3   H3   H  0  1 N N N N N N 10.519 2.754 20.991 -3.409 -2.120 1.405  H3   CLD 35 
CLD H6   H6   H  0  1 N N N N N N 13.001 0.983 24.939 -3.245 2.190  -0.974 H6   CLD 36 
CLD H5   H5   H  0  1 N N N N N N 10.780 0.017 24.315 -4.910 0.493  -1.616 H5   CLD 37 
CLD HOB1 1HOB H  0  0 N N N N N N 15.856 5.412 23.229 1.181  0.775  2.145  HOB1 CLD 38 
CLD HOB2 2HOB H  0  0 N N N N N N 17.044 4.474 21.219 -0.320 -0.399 -1.092 HOB2 CLD 39 
CLD H111 1H11 H  0  0 N N N N N N 14.370 0.952 18.658 3.039  4.960  -0.943 H111 CLD 40 
CLD H112 2H11 H  0  0 N N N N N N 13.467 1.274 20.199 1.988  5.372  0.434  H112 CLD 41 
CLD H113 3H11 H  0  0 N N N N N N 13.672 2.572 19.085 3.308  4.195  0.642  H113 CLD 42 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
CLD N   CA   SING N N 1  
CLD N   H    SING N N 2  
CLD N   H2   SING N N 3  
CLD CA  CB   SING N N 4  
CLD CA  C    SING N N 5  
CLD CA  HA   SING N N 6  
CLD CB  OB3  SING N N 7  
CLD CB  HB2  SING N N 8  
CLD CB  HB3  SING N N 9  
CLD OB3 B    SING N N 10 
CLD C   O    DOUB N N 11 
CLD C   OXT  SING N N 12 
CLD OXT HXT  SING N N 13 
CLD N9  C8   SING N N 14 
CLD N9  C10  SING N N 15 
CLD N9  HN9  SING N N 16 
CLD C8  C7   SING N N 17 
CLD C8  B    SING N N 18 
CLD C8  H8   SING N N 19 
CLD C7  C1   SING N N 20 
CLD C7  H71  SING N N 21 
CLD C7  H72  SING N N 22 
CLD C1  C2   DOUB Y N 23 
CLD C1  C6   SING Y N 24 
CLD C2  C3   SING Y N 25 
CLD C2  HC2  SING N N 26 
CLD C3  C4   DOUB Y N 27 
CLD C3  H3   SING N N 28 
CLD C6  C5   DOUB Y N 29 
CLD C6  H6   SING N N 30 
CLD C5  C4   SING Y N 31 
CLD C5  H5   SING N N 32 
CLD C4  CL4  SING N N 33 
CLD OB1 B    SING N N 34 
CLD OB1 HOB1 SING N N 35 
CLD OB2 B    SING N N 36 
CLD OB2 HOB2 SING N N 37 
CLD C10 O10  DOUB N N 38 
CLD C10 C11  SING N N 39 
CLD C11 H111 SING N N 40 
CLD C11 H112 SING N N 41 
CLD C11 H113 SING N N 42 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
CLD SMILES           ACDLabs              10.04 "Clc1ccc(cc1)CC(NC(=O)C)[B-](O)(O)OCC(C(=O)O)N"                                                                                                              
CLD SMILES_CANONICAL CACTVS               3.341 "CC(=O)N[C@H](Cc1ccc(Cl)cc1)[B-](O)(O)OC[C@H](N)C(O)=O"                                                                                                      
CLD SMILES           CACTVS               3.341 "CC(=O)N[CH](Cc1ccc(Cl)cc1)[B-](O)(O)OC[CH](N)C(O)=O"                                                                                                        
CLD SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "[B-]([C@@H](Cc1ccc(cc1)Cl)NC(=O)C)(O)(O)OC[C@@H](C(=O)O)N"                                                                                                  
CLD SMILES           "OpenEye OEToolkits" 1.5.0 "[B-](C(Cc1ccc(cc1)Cl)NC(=O)C)(O)(O)OCC(C(=O)O)N"                                                                                                            
CLD InChI            InChI                1.03  "InChI=1S/C13H19BClN2O6/c1-8(18)17-12(6-9-2-4-10(15)5-3-9)14(21,22)23-7-11(16)13(19)20/h2-5,11-12,21-22H,6-7,16H2,1H3,(H,17,18)(H,19,20)/q-1/t11-,12+/m0/s1" 
CLD InChIKey         InChI                1.03  RJXOEUFRQATKAB-NWDGAFQWSA-N                                                                                                                                  
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
CLD "SYSTEMATIC NAME" ACDLabs              10.04 "[(1S)-1-(acetylamino)-2-(4-chlorophenyl)ethyl](dihydroxy)(L-serinato-kappaO~3~)borate(1-)"         
CLD "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[(1S)-1-acetamido-2-(4-chlorophenyl)ethyl]-[(2S)-2-amino-3-hydroxy-3-oxo-propoxy]-dihydroxy-boron" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
CLD "Create component"  1999-07-08 EBI  
CLD "Modify descriptor" 2011-06-04 RCSB 
CLD "Modify PCM"        2024-09-27 PDBE 
# 
