data_DAD
# 
_chem_comp.id                                    DAD 
_chem_comp.name                                  "2',3'-DIDEOXYADENOSINE-5'-TRIPHOSPHATE" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C10 H16 N5 O11 P3" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     1999-07-08 
_chem_comp.pdbx_modified_date                    2011-06-04 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        475.182 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     DAD 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        ? 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        1CJT 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
DAD PG     PG   P 0 1 N N N 56.851 -6.523  58.752 1.154  0.282  -6.595 PG     DAD 1  
DAD O1G    O1G  O 0 1 N N N 56.324 -5.374  57.973 -0.203 0.096  -7.154 O1G    DAD 2  
DAD O2G    O2G  O 0 1 N N N 55.991 -7.718  58.956 2.043  1.148  -7.622 O2G    DAD 3  
DAD O3G    O3G  O 0 1 N N N 57.282 -6.017  60.085 1.843  -1.154 -6.369 O3G    DAD 4  
DAD PB     PB   P 0 1 N N S 58.577 -8.235  57.439 0.156  0.140  -4.215 PB     DAD 5  
DAD O1B    O1B  O 0 1 N N N 58.271 -9.389  58.332 0.805  -1.178 -4.044 O1B    DAD 6  
DAD O2B    O2B  O 0 1 N N N 59.952 -8.064  56.888 -1.303 -0.060 -4.863 O2B    DAD 7  
DAD O3B    O3B  O 0 1 N N N 58.162 -6.965  58.136 1.053  1.057  -5.188 O3B    DAD 8  
DAD PA     PA   P 0 1 N N R 56.784 -9.174  55.499 -0.890 -0.108 -1.865 PA     DAD 9  
DAD O1A    O1A  O 0 1 N N N 56.406 -8.510  54.229 -0.225 -1.423 -1.729 O1A    DAD 10 
DAD O2A    O2A  O 0 1 N N N 55.730 -9.752  56.372 -2.333 -0.304 -2.552 O2A    DAD 11 
DAD O3A    O3A  O 0 1 N N N 57.599 -8.221  56.305 0.013  0.858  -2.781 O3A    DAD 12 
DAD "O5'"  O5*  O 0 1 N N N 57.848 -10.307 55.139 -1.075 0.552  -0.408 "O5'"  DAD 13 
DAD "C5'"  C5*  C 0 1 N N N 57.450 -11.666 54.995 -1.881 -0.348 0.353  "C5'"  DAD 14 
DAD "C4'"  C4*  C 0 1 N N R 56.935 -11.914 53.595 -2.096 0.222  1.757  "C4'"  DAD 15 
DAD "O4'"  O4*  O 0 1 N N N 56.307 -13.215 53.565 -0.841 0.305  2.467  "O4'"  DAD 16 
DAD "C3'"  C3*  C 0 1 N N N 57.982 -11.917 52.477 -2.967 -0.735 2.599  "C3'"  DAD 17 
DAD "C2'"  C2*  C 0 1 N N N 57.404 -12.883 51.443 -2.363 -0.640 4.018  "C2'"  DAD 18 
DAD "C1'"  C1*  C 0 1 N N S 56.561 -13.807 52.319 -1.199 0.363  3.865  "C1'"  DAD 19 
DAD N9     N9   N 0 1 Y N N 56.716 -15.252 52.419 -0.064 -0.040 4.699  N9     DAD 20 
DAD C8     C8   C 0 1 Y N N 57.849 -15.959 52.714 0.946  -0.879 4.335  C8     DAD 21 
DAD N7     N7   N 0 1 Y N N 57.702 -17.255 52.619 1.785  -1.017 5.320  N7     DAD 22 
DAD C5     C5   C 0 1 Y N N 56.374 -17.409 52.247 1.370  -0.274 6.374  C5     DAD 23 
DAD C6     C6   C 0 1 Y N N 55.601 -18.548 51.963 1.853  -0.045 7.674  C6     DAD 24 
DAD N6     N6   N 0 1 N N N 56.060 -19.800 52.069 3.022  -0.645 8.110  N6     DAD 25 
DAD N1     N1   N 0 1 Y N N 54.301 -18.354 51.632 1.165  0.763  8.472  N1     DAD 26 
DAD C2     C2   C 0 1 Y N N 53.848 -17.099 51.529 0.049  1.339  8.064  C2     DAD 27 
DAD N3     N3   N 0 1 Y N N 54.486 -15.954 51.758 -0.444 1.150  6.859  N3     DAD 28 
DAD C4     C4   C 0 1 Y N N 55.762 -16.185 52.104 0.175  0.357  5.991  C4     DAD 29 
DAD HOG2   2HOG H 0 0 N N N 56.328 -8.453  59.454 2.078  0.650  -8.450 HOG2   DAD 30 
DAD HOG3   3HOG H 0 0 N N N 57.619 -6.752  60.583 2.724  -0.988 -6.005 HOG3   DAD 31 
DAD HOB2   2HOB H 0 0 N N N 60.147 -7.328  56.319 -1.690 0.820  -4.957 HOB2   DAD 32 
DAD HOA2   2HOA H 0 0 N N N 55.972 -10.177 57.186 -2.731 0.573  -2.621 HOA2   DAD 33 
DAD "H5'1" 1H5* H 0 0 N N N 58.269 -12.371 55.268 -1.379 -1.312 0.427  "H5'1" DAD 34 
DAD "H5'2" 2H5* H 0 0 N N N 56.708 -11.967 55.771 -2.846 -0.477 -0.137 "H5'2" DAD 35 
DAD "H4'"  H4*  H 0 1 N N N 56.251 -11.057 53.391 -2.562 1.206  1.698  "H4'"  DAD 36 
DAD "H3'1" 1H3* H 0 0 N N N 58.230 -10.906 52.075 -2.892 -1.754 2.219  "H3'1" DAD 37 
DAD "H3'2" 2H3* H 0 0 N N N 59.015 -12.166 52.814 -4.005 -0.403 2.604  "H3'2" DAD 38 
DAD "H2'1" 1H2* H 0 0 N N N 56.857 -12.402 50.598 -1.989 -1.613 4.340  "H2'1" DAD 39 
DAD "H2'2" 2H2* H 0 0 N N N 58.157 -13.395 50.800 -3.103 -0.262 4.724  "H2'2" DAD 40 
DAD "H1'"  H1*  H 0 1 N N N 55.693 -13.871 51.622 -1.527 1.367  4.131  "H1'"  DAD 41 
DAD H8     H8   H 0 1 N N N 58.814 -15.514 53.008 1.037  -1.358 3.372  H8     DAD 42 
DAD HN61   1HN6 H 0 0 N N N 55.499 -20.626 51.862 3.348  -0.476 9.008  HN61   DAD 43 
DAD HN62   2HN6 H 0 0 N N N 56.421 -19.909 53.016 3.513  -1.237 7.519  HN62   DAD 44 
DAD H2     H2   H 0 1 N N N 52.797 -16.993 51.209 -0.478 1.990  8.746  H2     DAD 45 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
DAD PG    O1G    DOUB N N 1  
DAD PG    O2G    SING N N 2  
DAD PG    O3G    SING N N 3  
DAD PG    O3B    SING N N 4  
DAD O2G   HOG2   SING N N 5  
DAD O3G   HOG3   SING N N 6  
DAD PB    O1B    DOUB N N 7  
DAD PB    O2B    SING N N 8  
DAD PB    O3B    SING N N 9  
DAD PB    O3A    SING N N 10 
DAD O2B   HOB2   SING N N 11 
DAD PA    O1A    DOUB N N 12 
DAD PA    O2A    SING N N 13 
DAD PA    O3A    SING N N 14 
DAD PA    "O5'"  SING N N 15 
DAD O2A   HOA2   SING N N 16 
DAD "O5'" "C5'"  SING N N 17 
DAD "C5'" "C4'"  SING N N 18 
DAD "C5'" "H5'1" SING N N 19 
DAD "C5'" "H5'2" SING N N 20 
DAD "C4'" "O4'"  SING N N 21 
DAD "C4'" "C3'"  SING N N 22 
DAD "C4'" "H4'"  SING N N 23 
DAD "O4'" "C1'"  SING N N 24 
DAD "C3'" "C2'"  SING N N 25 
DAD "C3'" "H3'1" SING N N 26 
DAD "C3'" "H3'2" SING N N 27 
DAD "C2'" "C1'"  SING N N 28 
DAD "C2'" "H2'1" SING N N 29 
DAD "C2'" "H2'2" SING N N 30 
DAD "C1'" N9     SING N N 31 
DAD "C1'" "H1'"  SING N N 32 
DAD N9    C8     SING Y N 33 
DAD N9    C4     SING Y N 34 
DAD C8    N7     DOUB Y N 35 
DAD C8    H8     SING N N 36 
DAD N7    C5     SING Y N 37 
DAD C5    C6     SING Y N 38 
DAD C5    C4     DOUB Y N 39 
DAD C6    N6     SING N N 40 
DAD C6    N1     DOUB Y N 41 
DAD N6    HN61   SING N N 42 
DAD N6    HN62   SING N N 43 
DAD N1    C2     SING Y N 44 
DAD C2    N3     DOUB Y N 45 
DAD C2    H2     SING N N 46 
DAD N3    C4     SING Y N 47 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
DAD SMILES_CANONICAL CACTVS               3.341 "Nc1ncnc2n(cnc12)[C@@H]3CC[C@H](CO[P@](O)(=O)O[P@](O)(=O)O[P](O)(O)=O)O3"                                                                                                           
DAD SMILES           CACTVS               3.341 "Nc1ncnc2n(cnc12)[CH]3CC[CH](CO[P](O)(=O)O[P](O)(=O)O[P](O)(O)=O)O3"                                                                                                                
DAD SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "c1nc(c2c(n1)n(cn2)[C@@H]3CC[C@@H](O3)CO[P@@](=O)(O)O[P@@](=O)(O)OP(=O)(O)O)N"                                                                                                      
DAD SMILES           "OpenEye OEToolkits" 1.5.0 "c1nc(c2c(n1)n(cn2)C3CCC(O3)COP(=O)(O)OP(=O)(O)OP(=O)(O)O)N"                                                                                                                        
DAD InChI            InChI                1.03  "InChI=1S/C10H16N5O11P3/c11-9-8-10(13-4-12-9)15(5-14-8)7-2-1-6(24-7)3-23-28(19,20)26-29(21,22)25-27(16,17)18/h4-7H,1-3H2,(H,19,20)(H,21,22)(H2,11,12,13)(H2,16,17,18)/t6-,7+/m1/s1" 
DAD InChIKey         InChI                1.03  OAKPWEUQDVLTCN-RQJHMYQMSA-N                                                                                                                                                         
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
DAD "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[[(2R,5S)-5-(6-aminopurin-9-yl)oxolan-2-yl]methoxy-hydroxy-phosphoryl] phosphono hydrogen phosphate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
DAD "Create component"  1999-07-08 RCSB 
DAD "Modify descriptor" 2011-06-04 RCSB 
# 
