data_DLD
#

_chem_comp.id                                   DLD
_chem_comp.name                                 "2-azidoethyl 2-(acetylamino)-4-O-[2-(acetylamino)-2-deoxy-beta-D-galactopyranosyl]-2-deoxy-beta-D-glucopyranoside"
_chem_comp.type                                 saccharide
_chem_comp.pdbx_type                            ATOMS
_chem_comp.formula                              "C18 H31 N5 O11"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2010-06-17
_chem_comp.pdbx_modified_date                   2020-07-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  OBS
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       493.466
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    DLD
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       3NBE
_chem_comp.pdbx_subcomponent_list               "Z3Q NGA"
_chem_comp.pdbx_processing_site                 PDBJ
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_residue_numbering
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_polymer_type
_chem_comp_atom.pdbx_component_id
_chem_comp_atom.pdbx_ordinal
DLD  C1B   C4   C   0  1  N  N  R   -7.332   -6.575  52.993  -2.536  -0.398  -0.028  Z3Q  1  C1    polymer  1   1  
DLD  C12   C1   C   0  1  N  N  N   -7.181   -7.270  55.303  -4.502  -1.312   0.993  Z3Q  1  C11   polymer  1   2  
DLD  C13   C2   C   0  1  N  N  N   -7.479   -8.512  56.154  -5.843  -0.916   1.615  Z3Q  1  C12   polymer  1   3  
DLD  C2B   C6   C   0  1  N  N  R   -7.566   -7.138  51.587  -1.941   0.912  -0.552  Z3Q  1  C2    polymer  1   4  
DLD  C7B   C16  C   0  1  N  N  N   -6.398   -9.365  51.299  -3.866   2.230  -1.253  Z3Q  1  C21   polymer  1   5  
DLD  C8B   C18  C   0  1  N  N  N   -7.567  -10.102  51.747  -4.761   2.798  -2.325  Z3Q  1  C2M   polymer  1   6  
DLD  C3B   C8   C   0  1  N  N  R   -7.658   -5.999  50.547  -0.553   0.634  -1.138  Z3Q  1  C3    polymer  1   7  
DLD  C4B   C10  C   0  1  N  N  S   -8.579   -4.870  50.993   0.324  -0.013  -0.061  Z3Q  1  C4    polymer  1   8  
DLD  C5B   C12  C   0  1  N  N  R   -8.413   -4.508  52.472  -0.359  -1.287   0.444  Z3Q  1  C5    polymer  1   9  
DLD  C6B   C14  C   0  1  N  N  N   -9.577   -3.683  52.980   0.480  -1.907   1.563  Z3Q  1  C6    polymer  1  10  
DLD  N14   N1   N   0  1  N  N  N   -8.948   -8.575  56.454  -6.696  -0.309   0.590  Z3Q  1  N1A   polymer  1  11  
DLD  N15   N2   N   1  1  N  N  N   -9.221   -7.377  57.426  -7.688  -0.774   0.338  Z3Q  1  N1B   polymer  1  12  
DLD  N16   N3   N  -1  1  N  N  N   -9.946   -6.305  58.385  -8.680  -1.238   0.086  Z3Q  1  N1C   polymer  1  13  
DLD  N2B   N5   N   0  1  N  N  N   -6.409   -7.959  51.226  -2.811   1.464  -1.594  Z3Q  1  N2    polymer  1  14  
DLD  O11   O1   O   0  1  N  N  N   -7.394   -7.638  53.926  -3.807  -0.137   0.570  Z3Q  1  O1    polymer  1  15  
DLD  O7B   O11  O   0  1  N  N  N   -5.427  -10.114  51.004  -4.095   2.464  -0.085  Z3Q  1  O21   polymer  1  16  
DLD  O3B   O3   O   0  1  N  N  N   -8.145   -6.488  49.289   0.041   1.863  -1.562  Z3Q  1  O3    polymer  1  17  
DLD  O4B   O5   O   0  1  N  N  N   -8.241   -3.686  50.194   1.598  -0.343  -0.616  Z3Q  1  O4    polymer  1  18  
DLD  O5B   O7   O   0  1  N  N  N   -8.351   -5.667  53.339  -1.657  -0.963   0.947  Z3Q  1  O5    polymer  1  19  
DLD  O6B   O9   O   0  1  N  N  N   -9.206   -3.019  54.157  -0.092  -3.158   1.950  Z3Q  1  O6    polymer  1  20  
DLD  C1A   C3   C   0  1  N  N  S   -9.238   -2.850  49.695   2.699  -0.078   0.256  NGA  2  C1    polymer  1  21  
DLD  C2A   C5   C   0  1  N  N  R   -8.591   -1.527  49.303   3.972  -0.695  -0.328  NGA  2  C2    polymer  1  22  
DLD  C3A   C7   C   0  1  N  N  R   -9.668   -0.582  48.785   5.157  -0.356   0.582  NGA  2  C3    polymer  1  23  
DLD  C4A   C9   C   0  1  N  N  R  -10.290   -1.222  47.562   5.260   1.166   0.722  NGA  2  C4    polymer  1  24  
DLD  C5A   C11  C   0  1  N  N  R  -10.899   -2.552  47.999   3.937   1.711   1.265  NGA  2  C5    polymer  1  25  
DLD  C6A   C13  C   0  1  N  N  N  -11.704   -3.270  46.909   4.010   3.237   1.352  NGA  2  C6    polymer  1  26  
DLD  C7A   C15  C   0  1  N  N  N   -6.544   -0.891  50.547   3.216  -2.704  -1.480  NGA  2  C7    polymer  1  27  
DLD  C8A   C17  C   0  1  N  N  N   -5.973   -0.097  51.649   3.058  -4.200  -1.565  NGA  2  C8    polymer  1  28  
DLD  N2A   N4   N   0  1  N  N  N   -7.865   -0.791  50.397   3.819  -2.149  -0.410  NGA  2  N2    polymer  1  29  
DLD  O3A   O2   O   0  1  N  N  N   -9.031    0.641  48.455   6.362  -0.867   0.007  NGA  2  O3    polymer  1  30  
DLD  O4A   O4   O   0  1  N  N  N   -9.266   -1.388  46.554   5.527   1.747  -0.556  NGA  2  O4    polymer  1  31  
DLD  O5A   O6   O   0  1  N  N  N   -9.884   -3.425  48.547   2.872   1.334   0.389  NGA  2  O5    polymer  1  32  
DLD  O6A   O8   O   0  1  N  N  N  -12.015   -4.638  47.203   2.821   3.737   1.967  NGA  2  O6    polymer  1  33  
DLD  O7A   O10  O   0  1  N  N  N   -5.753   -1.636  49.782   2.800  -1.999  -2.375  NGA  2  O7    polymer  1  34  
DLD  H1B   H7   H   0  1  N  N  N   -6.347   -6.087  53.025  -2.660  -1.097  -0.855  Z3Q  1  H1    polymer  1  35  
DLD  H12   H1   H   0  1  N  N  N   -6.138   -6.952  55.452  -4.677  -1.960   0.134  Z3Q  1  H111  polymer  1  36  
DLD  H12A  H2   H   0  1  N  N  N   -7.858   -6.449  55.583  -3.902  -1.843   1.732  Z3Q  1  H112  polymer  1  37  
DLD  H13   H3   H   0  1  N  N  N   -7.179   -9.415  55.602  -6.333  -1.802   2.018  Z3Q  1  H121  polymer  1  38  
DLD  H13A  H4   H   0  1  N  N  N   -6.915   -8.454  57.097  -5.673  -0.198   2.418  Z3Q  1  H122  polymer  1  39  
DLD  H2B   H10  H   0  1  N  N  N   -8.491   -7.733  51.570  -1.854   1.626   0.267  Z3Q  1  H2    polymer  1  40  
DLD  H8B   H30  H   0  1  N  N  N   -7.349  -11.180  51.732  -5.570   2.097  -2.531  Z3Q  1  H2M1  polymer  1  41  
DLD  H8BA  H31  H   0  1  N  N  N   -7.824   -9.794  52.771  -5.180   3.745  -1.984  Z3Q  1  H2M2  polymer  1  42  
DLD  H8BB  H32  H   0  1  N  N  N   -8.413   -9.890  51.077  -4.182   2.963  -3.233  Z3Q  1  H2M3  polymer  1  43  
DLD  HN2B  H11  H   0  1  N  N  N   -5.581   -7.496  50.910  -2.628   1.277  -2.528  Z3Q  1  H2N   polymer  1  44  
DLD  H3B   H14  H   0  1  N  N  N   -6.649   -5.584  50.410  -0.644  -0.041  -1.988  Z3Q  1  H3    polymer  1  45  
DLD  HO3B  H15  H   0  1  N  N  N   -7.587   -7.195  48.986  -0.462   2.327  -2.245  Z3Q  1  H3O   polymer  1  46  
DLD  H4B   H18  H   0  1  N  N  N   -9.624   -5.161  50.809   0.455   0.683   0.768  Z3Q  1  H4    polymer  1  47  
DLD  H5B   H20  H   0  1  N  N  N   -7.491   -3.918  52.583  -0.454  -1.998  -0.376  Z3Q  1  H5    polymer  1  48  
DLD  H6B   H24  H   0  1  N  N  N   -9.862   -2.944  52.217   1.498  -2.068   1.206  Z3Q  1  H61   polymer  1  49  
DLD  H6BA  H25  H   0  1  N  N  N  -10.431   -4.344  53.187   0.498  -1.234   2.420  Z3Q  1  H62   polymer  1  50  
DLD  HO6B  H26  H   0  1  N  N  N   -9.938   -2.502  54.474   0.390  -3.609   2.657  Z3Q  1  H6O   polymer  1  51  
DLD  H1A   H6   H   0  1  N  N  N   -9.988   -2.650  50.475   2.499  -0.514   1.235  NGA  2  H1    polymer  1  52  
DLD  H2A   H8   H   0  1  N  N  N   -7.882   -1.721  48.485   4.149  -0.290  -1.324  NGA  2  H2    polymer  1  53  
DLD  H3A   H12  H   0  1  N  N  N  -10.435   -0.435  49.559   5.003  -0.803   1.564  NGA  2  H3    polymer  1  54  
DLD  H4A   H16  H   0  1  N  N  N  -11.091   -0.570  47.182   6.067   1.415   1.412  NGA  2  H4    polymer  1  55  
DLD  H5A   H19  H   0  1  N  N  N  -11.607   -2.321  48.808   3.753   1.298   2.258  NGA  2  H5    polymer  1  56  
DLD  H6A   H21  H   0  1  N  N  N  -11.120   -3.243  45.977   4.876   3.525   1.948  NGA  2  H61   polymer  1  57  
DLD  H6AA  H22  H   0  1  N  N  N  -12.649   -2.726  46.766   4.103   3.653   0.349  NGA  2  H62   polymer  1  58  
DLD  H8A   H27  H   0  1  N  N  N   -4.884   -0.247  51.684   3.489  -4.662  -0.676  NGA  2  H81   polymer  1  59  
DLD  H8AA  H28  H   0  1  N  N  N   -6.191    0.968  51.484   1.999  -4.451  -1.627  NGA  2  H82   polymer  1  60  
DLD  H8AB  H29  H   0  1  N  N  N   -6.418   -0.420  52.602   3.571  -4.570  -2.452  NGA  2  H83   polymer  1  61  
DLD  HN2A  H9   H   0  1  N  N  N   -8.386   -0.214  51.026   4.151  -2.714   0.306  NGA  2  HN2   polymer  1  62  
DLD  HO3A  H13  H   0  1  N  N  N   -8.650    1.021  49.238   7.155  -0.688   0.532  NGA  2  HO3   polymer  1  63  
DLD  HO4A  H17  H   0  1  N  N  N   -8.917   -0.538  46.314   5.600   2.711  -0.542  NGA  2  HO4   polymer  1  64  
DLD  HO6A  H23  H   0  1  N  N  N  -12.512   -5.012  46.485   2.798   4.699   2.055  NGA  2  HO6   polymer  1  65  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
DLD  O4A  C4A   SING  N  N   1  
DLD  C6A  O6A   SING  N  N   2  
DLD  C6A  C5A   SING  N  N   3  
DLD  C4A  C5A   SING  N  N   4  
DLD  C4A  C3A   SING  N  N   5  
DLD  C5A  O5A   SING  N  N   6  
DLD  O3A  C3A   SING  N  N   7  
DLD  O5A  C1A   SING  N  N   8  
DLD  C3A  C2A   SING  N  N   9  
DLD  O3B  C3B   SING  N  N  10  
DLD  C2A  C1A   SING  N  N  11  
DLD  C2A  N2A   SING  N  N  12  
DLD  C1A  O4B   SING  N  N  13  
DLD  O7A  C7A   DOUB  N  N  14  
DLD  O4B  C4B   SING  N  N  15  
DLD  N2A  C7A   SING  N  N  16  
DLD  C3B  C4B   SING  N  N  17  
DLD  C3B  C2B   SING  N  N  18  
DLD  C7A  C8A   SING  N  N  19  
DLD  C4B  C5B   SING  N  N  20  
DLD  O7B  C7B   DOUB  N  N  21  
DLD  N2B  C7B   SING  N  N  22  
DLD  N2B  C2B   SING  N  N  23  
DLD  C7B  C8B   SING  N  N  24  
DLD  C2B  C1B   SING  N  N  25  
DLD  C5B  C6B   SING  N  N  26  
DLD  C5B  O5B   SING  N  N  27  
DLD  C6B  O6B   SING  N  N  28  
DLD  C1B  O5B   SING  N  N  29  
DLD  C1B  O11   SING  N  N  30  
DLD  O11  C12   SING  N  N  31  
DLD  C12  C13   SING  N  N  32  
DLD  C13  N14   SING  N  N  33  
DLD  N14  N15   DOUB  N  N  34  
DLD  N15  N16   DOUB  N  N  35  
DLD  C12  H12   SING  N  N  36  
DLD  C12  H12A  SING  N  N  37  
DLD  C13  H13   SING  N  N  38  
DLD  C13  H13A  SING  N  N  39  
DLD  C1A  H1A   SING  N  N  40  
DLD  C1B  H1B   SING  N  N  41  
DLD  C2A  H2A   SING  N  N  42  
DLD  N2A  HN2A  SING  N  N  43  
DLD  C2B  H2B   SING  N  N  44  
DLD  N2B  HN2B  SING  N  N  45  
DLD  C3A  H3A   SING  N  N  46  
DLD  O3A  HO3A  SING  N  N  47  
DLD  C3B  H3B   SING  N  N  48  
DLD  O3B  HO3B  SING  N  N  49  
DLD  C4A  H4A   SING  N  N  50  
DLD  O4A  HO4A  SING  N  N  51  
DLD  C4B  H4B   SING  N  N  52  
DLD  C5A  H5A   SING  N  N  53  
DLD  C5B  H5B   SING  N  N  54  
DLD  C6A  H6A   SING  N  N  55  
DLD  C6A  H6AA  SING  N  N  56  
DLD  O6A  HO6A  SING  N  N  57  
DLD  C6B  H6B   SING  N  N  58  
DLD  C6B  H6BA  SING  N  N  59  
DLD  O6B  HO6B  SING  N  N  60  
DLD  C8A  H8A   SING  N  N  61  
DLD  C8A  H8AA  SING  N  N  62  
DLD  C8A  H8AB  SING  N  N  63  
DLD  C8B  H8B   SING  N  N  64  
DLD  C8B  H8BA  SING  N  N  65  
DLD  C8B  H8BB  SING  N  N  66  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
DLD  SMILES            ACDLabs               12.01  "O=C(NC2C(O)C(O)C(OC2OC1C(OC(OCC\N=[N+]=[N-])C(NC(=O)C)C1O)CO)CO)C"  
DLD  InChI             InChI                 1.03   "InChI=1S/C18H31N5O11/c1-7(26)21-11-14(29)13(28)9(5-24)32-18(11)34-16-10(6-25)33-17(31-4-3-20-23-19)12(15(16)30)22-8(2)27/h9-18,24-25,28-30H,3-6H2,1-2H3,(H,21,26)(H,22,27)/t9-,10-,11-,12-,13+,14-,15-,16-,17-,18+/m1/s1"  
DLD  InChIKey          InChI                 1.03   YKVRUFHLKAPVGV-CHCRNKISSA-N  
DLD  SMILES_CANONICAL  CACTVS                3.370  "CC(=O)N[C@@H]1[C@@H](O)[C@@H](O)[C@@H](CO)O[C@H]1O[C@H]2[C@H](O)[C@@H](NC(C)=O)[C@H](OCCN=[N+]=[N-])O[C@@H]2CO"  
DLD  SMILES            CACTVS                3.370  "CC(=O)N[CH]1[CH](O)[CH](O)[CH](CO)O[CH]1O[CH]2[CH](O)[CH](NC(C)=O)[CH](OCCN=[N+]=[N-])O[CH]2CO"  
DLD  SMILES_CANONICAL  "OpenEye OEToolkits"  1.7.2  "CC(=O)N[C@@H]1[C@H]([C@H]([C@H](O[C@H]1O[C@@H]2[C@H](O[C@H]([C@@H]([C@H]2O)NC(=O)C)OCCN=[N+]=[N-])CO)CO)O)O"  
DLD  SMILES            "OpenEye OEToolkits"  1.7.2  "CC(=O)NC1C(C(C(OC1OC2C(OC(C(C2O)NC(=O)C)OCCN=[N+]=[N-])CO)CO)O)O"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
DLD  "SYSTEMATIC NAME"  ACDLabs               12.01  "2-azidoethyl 2-(acetylamino)-4-O-[2-(acetylamino)-2-deoxy-beta-D-galactopyranosyl]-2-deoxy-beta-D-glucopyranoside"  
DLD  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.7.2  "N-[(2S,3R,4R,5R,6R)-2-[(2R,3S,4R,5R,6R)-5-acetamido-6-(2-azidoethoxy)-2-(hydroxymethyl)-4-oxidanyl-oxan-3-yl]oxy-6-(hydroxymethyl)-4,5-bis(oxidanyl)oxan-3-yl]ethanamide"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
DLD  "Create component"    2010-06-17  PDBJ  
DLD  "Modify descriptor"   2011-06-04  RCSB  
DLD  "Modify name"         2011-06-28  PDBJ  
DLD  "Other modification"  2011-06-28  PDBJ  
DLD  "Other modification"  2020-07-03  RCSB  
DLD  "Obsolete component"  2020-07-17  RCSB  
##
