data_GLD
#

_chem_comp.id                                   GLD
_chem_comp.name                                 "4,6-dideoxy-alpha-D-xylo-hexopyranose"
_chem_comp.type                                 "D-saccharide, alpha linking"
_chem_comp.pdbx_type                            ATOMS
_chem_comp.formula                              "C6 H12 O4"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "4,6-DIDEOXYGLUCOSE; 4,6-dideoxy-alpha-D-xylo-hexose; 4,6-dideoxy-D-xylo-hexose; 4,6-dideoxy-xylo-hexose"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    1999-07-08
_chem_comp.pdbx_modified_date                   2020-07-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       148.157
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    GLD
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       ?
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       ?
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 EBI
#   #
loop_
_pdbx_chem_comp_synonyms.ordinal
_pdbx_chem_comp_synonyms.comp_id
_pdbx_chem_comp_synonyms.name
_pdbx_chem_comp_synonyms.provenance
_pdbx_chem_comp_synonyms.type
1  GLD  "4,6-DIDEOXYGLUCOSE"               PDB  ?  
2  GLD  "4,6-dideoxy-alpha-D-xylo-hexose"  PDB  ?  
3  GLD  "4,6-dideoxy-D-xylo-hexose"        PDB  ?  
4  GLD  "4,6-dideoxy-xylo-hexose"          PDB  ?  
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
GLD  C1   C1   C  0  1  N  N  S  49.643  89.654  46.002   1.333  -0.344  -0.056  C1   GLD   1  
GLD  C2   C2   C  0  1  N  N  R  49.960  88.195  45.742   0.253  -0.533  -1.123  C2   GLD   2  
GLD  C3   C3   C  0  1  N  N  S  49.046  87.541  44.733  -0.944   0.360  -0.785  C3   GLD   3  
GLD  C4   C4   C  0  1  N  N  N  47.599  87.896  45.015  -1.388   0.063   0.651  C4   GLD   4  
GLD  C5   C5   C  0  1  N  N  R  47.436  89.403  45.004  -0.183   0.207   1.584  C5   GLD   5  
GLD  C6   C6   C  0  1  N  N  N  46.022  89.802  45.302  -0.623  -0.054   3.026  C6   GLD   6  
GLD  O1   O1   O  0  1  N  Y  N  50.390  90.488  45.142   1.724   1.029  -0.013  O1   GLD   7  
GLD  O2   O2   O  0  1  N  N  N  51.317  88.075  45.340   0.775  -0.170  -2.403  O2   GLD   8  
GLD  O3   O3   O  0  1  N  N  N  49.146  86.117  44.804  -2.020   0.087  -1.685  O3   GLD   9  
GLD  O5   O5   O  0  1  N  N  N  48.258  89.985  46.019   0.824  -0.732   1.218  O5   GLD  10  
GLD  H1   H1   H  0  1  N  N  N  49.963  89.844  47.052   2.199  -0.959  -0.303  H1   GLD  11  
GLD  H2   H2   H  0  1  N  N  N  49.786  87.648  46.698  -0.063  -1.576  -1.141  H2   GLD  12  
GLD  H3   H3   H  0  1  N  N  N  49.356  87.907  43.726  -0.654   1.408  -0.869  H3   GLD  13  
GLD  H4   H41  H  0  1  N  N  N  46.896  87.391  44.311  -1.776  -0.953   0.710  H4   GLD  14  
GLD  H42  H42  H  0  1  N  N  N  47.230  87.439  45.963  -2.164   0.769   0.946  H42  GLD  15  
GLD  H5   H5   H  0  1  N  N  N  47.725  89.759  43.987   0.217   1.217   1.506  H5   GLD  16  
GLD  H61  H61  H  0  1  N  N  N  45.902  90.910  45.293   0.233   0.050   3.692  H61  GLD  17  
GLD  H62  H62  H  0  1  N  N  N  45.303  89.308  44.607  -1.392   0.665   3.308  H62  GLD  18  
GLD  H63  H63  H  0  1  N  N  N  45.666  89.359  46.261  -1.024  -1.064   3.106  H63  GLD  19  
GLD  HO1  HO1  H  0  1  N  Y  N  50.191  91.402  45.305   2.404   1.105   0.670  HO1  GLD  20  
GLD  HO2  HO2  H  0  1  N  Y  N  51.515  87.160  45.177   1.525  -0.755  -2.576  HO2  GLD  21  
GLD  HO3  HO3  H  0  1  N  Y  N  48.571  85.705  44.169  -1.698   0.287  -2.575  HO3  GLD  22  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
GLD  C1  C2   SING  N  N   1  
GLD  C1  O1   SING  N  N   2  
GLD  C1  O5   SING  N  N   3  
GLD  C1  H1   SING  N  N   4  
GLD  C2  C3   SING  N  N   5  
GLD  C2  O2   SING  N  N   6  
GLD  C2  H2   SING  N  N   7  
GLD  C3  C4   SING  N  N   8  
GLD  C3  O3   SING  N  N   9  
GLD  C3  H3   SING  N  N  10  
GLD  C4  C5   SING  N  N  11  
GLD  C4  H4   SING  N  N  12  
GLD  C4  H42  SING  N  N  13  
GLD  C5  C6   SING  N  N  14  
GLD  C5  O5   SING  N  N  15  
GLD  C5  H5   SING  N  N  16  
GLD  C6  H61  SING  N  N  17  
GLD  C6  H62  SING  N  N  18  
GLD  C6  H63  SING  N  N  19  
GLD  O1  HO1  SING  N  N  20  
GLD  O2  HO2  SING  N  N  21  
GLD  O3  HO3  SING  N  N  22  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
GLD  SMILES            ACDLabs               10.04  "OC1CC(OC(O)C1O)C"  
GLD  SMILES_CANONICAL  CACTVS                3.341  "C[C@@H]1C[C@H](O)[C@@H](O)[C@@H](O)O1"  
GLD  SMILES            CACTVS                3.341  "C[CH]1C[CH](O)[CH](O)[CH](O)O1"  
GLD  SMILES_CANONICAL  "OpenEye OEToolkits"  1.5.0  "C[C@@H]1C[C@@H]([C@H]([C@H](O1)O)O)O"  
GLD  SMILES            "OpenEye OEToolkits"  1.5.0  "CC1CC(C(C(O1)O)O)O"  
GLD  InChI             InChI                 1.03   "InChI=1S/C6H12O4/c1-3-2-4(7)5(8)6(9)10-3/h3-9H,2H2,1H3/t3-,4+,5-,6+/m1/s1"  
GLD  InChIKey          InChI                 1.03   BJBURJZEESAQPG-MOJAZDJTSA-N  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
GLD  "SYSTEMATIC NAME"            ACDLabs               10.04  "4,6-dideoxy-alpha-D-xylo-hexopyranose"  
GLD  "SYSTEMATIC NAME"            "OpenEye OEToolkits"  1.5.0  "(2S,3R,4S,6R)-6-methyloxane-2,3,4-triol"  
GLD  "IUPAC CARBOHYDRATE SYMBOL"  PDB-CARE              1.0    "a-D-4,6-deoxy-Glcp"  
#   #
loop_
_pdbx_chem_comp_feature.comp_id
_pdbx_chem_comp_feature.type
_pdbx_chem_comp_feature.value
_pdbx_chem_comp_feature.source
_pdbx_chem_comp_feature.support
GLD  "CARBOHYDRATE ISOMER"                  D         PDB  ?  
GLD  "CARBOHYDRATE RING"                    pyranose  PDB  ?  
GLD  "CARBOHYDRATE ANOMER"                  alpha     PDB  ?  
GLD  "CARBOHYDRATE PRIMARY CARBONYL GROUP"  aldose    PDB  ?  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
GLD  "Create component"          1999-07-08  EBI   
GLD  "Modify descriptor"         2011-06-04  RCSB  
GLD  "Other modification"        2020-07-03  RCSB  
GLD  "Modify name"               2020-07-17  RCSB  
GLD  "Modify synonyms"           2020-07-17  RCSB  
GLD  "Modify linking type"       2020-07-17  RCSB  
GLD  "Modify atom id"            2020-07-17  RCSB  
GLD  "Modify component atom id"  2020-07-17  RCSB  
GLD  "Modify leaving atom flag"  2020-07-17  RCSB  
##
