data_HFD
#

_chem_comp.id                                   HFD
_chem_comp.name                                 
;2-fluoro-9-{5-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]oxy}phosphoryl]-beta-D-arabinofuranosyl}-9H-purin-6-a
mine
;

_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C10 H15 F N5 O13 P3"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        Fludarabine-TRIPHOSPHATE
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2018-06-27
_chem_comp.pdbx_modified_date                   2020-06-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       525.171
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    HFD
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       6DWK
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
HFD  O2A    O1   O  0  1  N  N  N  -1.993   2.239  -4.535  -2.886  -2.875   0.683  O2A    HFD   1  
HFD  PA     P1   P  0  1  N  N  N  -1.335   3.426  -3.904  -2.334  -1.502   0.697  PA     HFD   2  
HFD  O1A    O2   O  0  1  N  N  N  -2.250   3.892  -2.833  -2.115  -1.028   2.220  O1A    HFD   3  
HFD  O3A    O3   O  0  1  N  N  N  -0.937   4.555  -5.090  -3.363  -0.503  -0.034  O3A    HFD   4  
HFD  PB     P2   P  0  1  N  N  N  -1.786   5.657  -5.950  -4.957  -0.293   0.034  PB     HFD   5  
HFD  O1B    O4   O  0  1  N  N  N  -1.069   6.788  -6.582  -5.690  -1.484  -0.762  O1B    HFD   6  
HFD  O2B    O5   O  0  1  N  N  N  -2.286   4.810  -7.024  -5.396  -0.302   1.448  O2B    HFD   7  
HFD  O3B    O6   O  0  1  N  N  N  -2.578   6.329  -4.615  -5.342   1.119  -0.638  O3B    HFD   8  
HFD  PG     P3   P  0  1  N  N  N  -1.717   7.061  -3.366  -6.622   2.090  -0.543  PG     HFD   9  
HFD  O3G    O7   O  0  1  N  N  N  -2.446   7.354  -2.122  -6.245   3.535  -1.144  O3G    HFD  10  
HFD  O2G    O8   O  0  1  N  N  N  -0.478   6.417  -2.925  -7.839   1.459  -1.388  O2G    HFD  11  
HFD  O1G    O9   O  0  1  N  N  N  -1.159   8.306  -3.888  -7.028   2.235   0.873  O1G    HFD  12  
HFD  "O5'"  O10  O  0  1  N  N  N   0.254   3.070  -3.368  -0.923  -1.482  -0.079  "O5'"  HFD  13  
HFD  "C5'"  C1   C  0  1  N  N  N   1.383   3.940  -3.575   0.165  -2.343   0.263  "C5'"  HFD  14  
HFD  "C4'"  C2   C  0  1  N  N  R   2.618   3.456  -2.939   1.347  -2.065  -0.668  "C4'"  HFD  15  
HFD  "C3'"  C3   C  0  1  N  N  S   3.322   2.321  -3.606   2.488  -3.059  -0.379  "C3'"  HFD  16  
HFD  "O3'"  O11  O  0  1  N  N  N   4.788   2.344  -3.476   2.784  -3.833  -1.543  "O3'"  HFD  17  
HFD  "C2'"  C4   C  0  1  N  N  S   2.779   1.156  -2.921   3.691  -2.159  -0.006  "C2'"  HFD  18  
HFD  "O2'"  O12  O  0  1  N  N  N   1.600   0.755  -3.605   3.822  -2.045   1.413  "O2'"  HFD  19  
HFD  "C1'"  C5   C  0  1  N  N  R   2.374   1.502  -1.579   3.287  -0.801  -0.635  "C1'"  HFD  20  
HFD  "O4'"  O13  O  0  1  N  N  N   2.113   2.971  -1.668   1.860  -0.744  -0.426  "O4'"  HFD  21  
HFD  N9     N1   N  0  1  Y  N  N   1.221   0.860  -1.044   3.955   0.306   0.055  N9     HFD  22  
HFD  C4     C6   C  0  1  Y  N  N   1.297  -0.203  -0.196   5.214   0.783  -0.205  C4     HFD  23  
HFD  C5     C7   C  0  1  Y  N  N  -0.154  -0.470   0.172   5.423   1.839   0.697  C5     HFD  24  
HFD  N7     N2   N  0  1  Y  N  N  -0.921   0.515  -0.549   4.300   1.950   1.448  N7     HFD  25  
HFD  C8     C8   C  0  1  Y  N  N  -0.052   1.271  -1.230   3.435   1.055   1.069  C8     HFD  26  
HFD  N3     N3   N  0  1  Y  N  N   2.245  -1.017   0.276   6.179   0.466  -1.064  N3     HFD  27  
HFD  C2     C9   C  0  1  Y  N  N   1.840  -2.051   1.089   7.317   1.132  -1.071  C2     HFD  28  
HFD  F2     F1   F  0  1  N  N  N   2.651  -2.984   1.655   8.272   0.779  -1.959  F2     HFD  29  
HFD  N1     N4   N  0  1  Y  N  N   0.575  -2.315   1.444   7.558   2.133  -0.240  N1     HFD  30  
HFD  C6     C10  C  0  1  Y  N  N  -0.483  -1.580   1.021   6.652   2.519   0.652  C6     HFD  31  
HFD  N6     N5   N  0  1  N  N  N  -1.819  -1.947   1.515   6.912   3.567   1.517  N6     HFD  32  
HFD  H1     H1   H  0  1  N  N  N  -3.018   3.334  -2.807  -1.755  -0.135   2.306  H1     HFD  33  
HFD  H2     H2   H  0  1  N  N  N  -1.103   6.697  -7.527  -5.449  -1.539  -1.697  H2     HFD  34  
HFD  H3     H3   H  0  1  N  N  N  -2.393   8.284  -1.935  -6.971   4.174  -1.119  H3     HFD  35  
HFD  H4     H4   H  0  1  N  N  N   0.259   6.987  -3.110  -7.643   1.335  -2.327  H4     HFD  36  
HFD  H5     H5   H  0  1  N  N  N   1.560   4.030  -4.657   0.465  -2.157   1.295  H5     HFD  37  
HFD  H6     H6   H  0  1  N  N  N   1.141   4.929  -3.159  -0.145  -3.382   0.156  H6     HFD  38  
HFD  H7     H7   H  0  1  N  N  N   3.317   4.291  -2.783   1.029  -2.154  -1.707  H7     HFD  39  
HFD  H8     H8   H  0  1  N  N  N   3.044   2.293  -4.670   2.224  -3.711   0.454  H8     HFD  40  
HFD  H9     H9   H  0  1  N  N  N   5.158   1.593  -3.925   3.496  -4.476  -1.417  H9     HFD  41  
HFD  H10    H10  H  0  1  N  N  N   3.519   0.342  -2.904   4.611  -2.536  -0.451  H10    HFD  42  
HFD  H11    H11  H  0  1  N  N  N   1.227  -0.006  -3.175   3.985  -2.885   1.862  H11    HFD  43  
HFD  H12    H12  H  0  1  N  N  N   3.224   1.344  -0.899   3.523  -0.786  -1.699  H12    HFD  44  
HFD  H13    H13  H  0  1  N  N  N  -0.334   2.107  -1.852   2.452   0.923   1.496  H13    HFD  45  
HFD  H14    H14  H  0  1  N  N  N  -1.744  -2.734   2.128   6.244   3.840   2.164  H14    HFD  46  
HFD  H15    H15  H  0  1  N  N  N  -2.215  -1.174   2.011   7.764   4.029   1.476  H15    HFD  47  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
HFD  O2B    PB     DOUB  N  N   1  
HFD  O1B    PB     SING  N  N   2  
HFD  PB     O3A    SING  N  N   3  
HFD  PB     O3B    SING  N  N   4  
HFD  O3A    PA     SING  N  N   5  
HFD  O3B    PG     SING  N  N   6  
HFD  O2A    PA     DOUB  N  N   7  
HFD  PA     "O5'"  SING  N  N   8  
HFD  PA     O1A    SING  N  N   9  
HFD  O1G    PG     DOUB  N  N  10  
HFD  "C3'"  "O3'"  SING  N  N  11  
HFD  "C3'"  "C4'"  SING  N  N  12  
HFD  "C3'"  "C2'"  SING  N  N  13  
HFD  "O2'"  "C2'"  SING  N  N  14  
HFD  "C5'"  "O5'"  SING  N  N  15  
HFD  "C5'"  "C4'"  SING  N  N  16  
HFD  PG     O2G    SING  N  N  17  
HFD  PG     O3G    SING  N  N  18  
HFD  "C4'"  "O4'"  SING  N  N  19  
HFD  "C2'"  "C1'"  SING  N  N  20  
HFD  "O4'"  "C1'"  SING  N  N  21  
HFD  "C1'"  N9     SING  N  N  22  
HFD  C8     N9     SING  Y  N  23  
HFD  C8     N7     DOUB  Y  N  24  
HFD  N9     C4     SING  Y  N  25  
HFD  N7     C5     SING  Y  N  26  
HFD  C4     C5     DOUB  Y  N  27  
HFD  C4     N3     SING  Y  N  28  
HFD  C5     C6     SING  Y  N  29  
HFD  N3     C2     DOUB  Y  N  30  
HFD  C6     N1     DOUB  Y  N  31  
HFD  C6     N6     SING  N  N  32  
HFD  C2     N1     SING  Y  N  33  
HFD  C2     F2     SING  N  N  34  
HFD  O1A    H1     SING  N  N  35  
HFD  O1B    H2     SING  N  N  36  
HFD  O3G    H3     SING  N  N  37  
HFD  O2G    H4     SING  N  N  38  
HFD  "C5'"  H5     SING  N  N  39  
HFD  "C5'"  H6     SING  N  N  40  
HFD  "C4'"  H7     SING  N  N  41  
HFD  "C3'"  H8     SING  N  N  42  
HFD  "O3'"  H9     SING  N  N  43  
HFD  "C2'"  H10    SING  N  N  44  
HFD  "O2'"  H11    SING  N  N  45  
HFD  "C1'"  H12    SING  N  N  46  
HFD  C8     H13    SING  N  N  47  
HFD  N6     H14    SING  N  N  48  
HFD  N6     H15    SING  N  N  49  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
HFD  SMILES            ACDLabs               12.01  "O=P(OCC1OC(C(C1O)O)n3c2c(c(nc(n2)F)N)nc3)(O)OP(OP(O)(O)=O)(O)=O"  
HFD  InChI             InChI                 1.03   "InChI=1S/C10H15FN5O13P3/c11-10-14-7(12)4-8(15-10)16(2-13-4)9-6(18)5(17)3(27-9)1-26-31(22,23)29-32(24,25)28-30(19,20)21/h2-3,5-6,9,17-18H,1H2,(H,22,23)(H,24,25)(H2,12,14,15)(H2,19,20,21)/t3-,5-,6+,9-/m1/s1"  
HFD  InChIKey          InChI                 1.03   PIOKUWLZUXUBCO-FJFJXFQQSA-N  
HFD  SMILES_CANONICAL  CACTVS                3.385  "Nc1nc(F)nc2n(cnc12)[C@@H]3O[C@H](CO[P](O)(=O)O[P](O)(=O)O[P](O)(O)=O)[C@@H](O)[C@@H]3O"  
HFD  SMILES            CACTVS                3.385  "Nc1nc(F)nc2n(cnc12)[CH]3O[CH](CO[P](O)(=O)O[P](O)(=O)O[P](O)(O)=O)[CH](O)[CH]3O"  
HFD  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.6  "c1nc2c(nc(nc2n1[C@H]3[C@H]([C@@H]([C@H](O3)COP(=O)(O)OP(=O)(O)OP(=O)(O)O)O)O)F)N"  
HFD  SMILES            "OpenEye OEToolkits"  2.0.6  "c1nc2c(nc(nc2n1C3C(C(C(O3)COP(=O)(O)OP(=O)(O)OP(=O)(O)O)O)O)F)N"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
HFD  "SYSTEMATIC NAME"  ACDLabs               12.01  "2-fluoro-9-{5-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]oxy}phosphoryl]-beta-D-arabinofuranosyl}-9H-purin-6-amine"  
HFD  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.6  "[[(2~{R},3~{S},4~{S},5~{R})-5-(6-azanyl-2-fluoranyl-purin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] phosphono hydrogen phosphate"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
HFD  "Create component"  2018-06-27  RCSB  
HFD  "Modify synonyms"   2018-06-27  RCSB  
HFD  "Initial release"   2018-10-10  RCSB  
HFD  "Modify synonyms"   2020-06-05  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     HFD
_pdbx_chem_comp_synonyms.name        Fludarabine-TRIPHOSPHATE
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
