data_IRD
# 
_chem_comp.id                                    IRD 
_chem_comp.name                                  "(3~{S})-1-(4-azanyl-3,5,12-triazatetracyclo[9.7.0.0^{2,7}.0^{13,18}]octadeca-1(11),2,4,6,13(18),14,16-heptaen-16-yl)-3-methyl-pent-1-yn-3-ol" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C21 H22 N4 O" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2022-04-07 
_chem_comp.pdbx_modified_date                    2023-04-14 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        346.426 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     IRD 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7ZHQ 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
IRD N1  N1  N 0 1 Y N N 71.225 38.310 0.802  2.105  1.788  0.673  N1  IRD 1  
IRD C2  C1  C 0 1 N N S 66.118 34.899 4.300  -5.387 0.361  -0.393 C2  IRD 2  
IRD N3  N2  N 0 1 Y N N 73.408 37.884 -0.119 3.791  3.099  -0.228 N3  IRD 3  
IRD C4  C2  C 0 1 N N N 66.536 36.037 3.453  -4.056 -0.243 -0.219 C4  IRD 4  
IRD C5  C3  C 0 1 N N N 66.833 36.997 2.807  -2.995 -0.726 -0.080 C5  IRD 5  
IRD C6  C4  C 0 1 Y N N 67.090 38.194 2.048  -1.700 -1.314 0.090  C6  IRD 6  
IRD O   O1  O 0 1 N N N 64.668 34.838 4.318  -6.386 -0.659 -0.328 O   IRD 7  
IRD C3  C5  C 0 1 N N N 66.631 35.122 5.687  -5.457 1.057  -1.753 C3  IRD 8  
IRD C1  C6  C 0 1 N N N 66.704 33.580 3.836  -5.631 1.385  0.717  C1  IRD 9  
IRD C   C7  C 0 1 N N N 66.785 33.420 2.371  -7.014 2.014  0.536  C   IRD 10 
IRD C13 C8  C 0 1 Y N N 68.355 38.406 1.482  -0.569 -0.494 0.061  C13 IRD 11 
IRD C12 C9  C 0 1 Y N N 68.612 39.574 0.760  0.664  -1.122 0.231  C12 IRD 12 
IRD C9  C10 C 0 1 Y N N 67.581 40.521 0.623  0.755  -2.525 0.429  C9  IRD 13 
IRD C8  C11 C 0 1 Y N N 66.309 40.313 1.168  -0.390 -3.320 0.452  C8  IRD 14 
IRD C7  C12 C 0 1 Y N N 66.069 39.143 1.877  -1.598 -2.694 0.281  C7  IRD 15 
IRD C11 C13 C 0 1 Y N N 69.792 40.122 0.060  2.028  -0.638 0.251  C11 IRD 16 
IRD C14 C14 C 0 1 Y N N 71.083 39.360 -0.015 2.594  0.715  0.072  C14 IRD 17 
IRD C17 C15 C 0 1 Y N N 72.078 39.714 -0.945 3.710  0.838  -0.768 C17 IRD 18 
IRD C16 C16 C 0 1 Y N N 73.226 38.944 -0.914 4.317  2.068  -0.877 C16 IRD 19 
IRD C15 C17 C 0 1 Y N N 72.372 37.599 0.707  2.703  2.963  0.516  C15 IRD 20 
IRD N2  N3  N 0 1 N N N 72.468 36.487 1.455  2.174  4.077  1.145  N2  IRD 21 
IRD C18 C18 C 0 1 N N N 71.899 40.797 -1.986 4.134  -0.341 -1.586 C18 IRD 22 
IRD C19 C19 C 0 1 N N N 71.640 42.174 -1.411 4.969  -1.364 -0.804 C19 IRD 23 
IRD C20 C20 C 0 1 N N N 70.159 42.441 -1.182 4.335  -1.599 0.570  C20 IRD 24 
IRD C10 C21 C 0 1 Y N N 69.392 41.382 -0.448 2.841  -1.709 0.468  C10 IRD 25 
IRD N   N4  N 0 1 Y N N 68.066 41.607 -0.104 2.079  -2.836 0.570  N   IRD 26 
IRD H1  H1  H 0 1 N N N 64.388 34.110 4.860  -6.399 -1.143 0.509  H1  IRD 27 
IRD H2  H2  H 0 1 N N N 66.328 34.283 6.330  -6.442 1.505  -1.882 H2  IRD 28 
IRD H3  H3  H 0 1 N N N 67.729 35.189 5.665  -4.695 1.835  -1.803 H3  IRD 29 
IRD H4  H4  H 0 1 N N N 66.214 36.059 6.086  -5.283 0.327  -2.544 H4  IRD 30 
IRD H5  H5  H 0 1 N N N 66.078 32.768 4.235  -5.581 0.890  1.687  H5  IRD 31 
IRD H6  H6  H 0 1 N N N 67.721 33.494 4.246  -4.869 2.163  0.668  H6  IRD 32 
IRD H7  H7  H 0 1 N N N 67.220 32.438 2.132  -7.188 2.744  1.327  H7  IRD 33 
IRD H8  H8  H 0 1 N N N 65.776 33.488 1.938  -7.064 2.510  -0.433 H8  IRD 34 
IRD H9  H9  H 0 1 N N N 67.419 34.214 1.950  -7.776 1.236  0.586  H9  IRD 35 
IRD H10 H10 H 0 1 N N N 69.132 37.666 1.604  -0.647 0.573  -0.086 H10 IRD 36 
IRD H11 H11 H 0 1 N N N 65.529 41.048 1.040  -0.328 -4.389 0.600  H11 IRD 37 
IRD H12 H12 H 0 1 N N N 65.092 38.962 2.299  -2.500 -3.288 0.294  H12 IRD 38 
IRD H13 H13 H 0 1 N N N 74.032 39.218 -1.578 5.205  2.192  -1.480 H13 IRD 39 
IRD H14 H14 H 0 1 N N N 73.338 36.031 1.265  2.600  4.942  1.039  H14 IRD 40 
IRD H15 H15 H 0 1 N N N 72.425 36.732 2.424  1.378  3.992  1.693  H15 IRD 41 
IRD H16 H16 H 0 1 N N N 71.046 40.524 -2.625 3.242  -0.838 -1.969 H16 IRD 42 
IRD H17 H17 H 0 1 N N N 72.813 40.844 -2.596 4.721  0.015  -2.432 H17 IRD 43 
IRD H18 H18 H 0 1 N N N 72.167 42.259 -0.449 5.000  -2.304 -1.355 H18 IRD 44 
IRD H19 H19 H 0 1 N N N 72.030 42.928 -2.111 5.982  -0.984 -0.677 H19 IRD 45 
IRD H20 H20 H 0 1 N N N 70.073 43.375 -0.607 4.734  -2.521 0.993  H20 IRD 46 
IRD H21 H21 H 0 1 N N N 69.687 42.573 -2.167 4.588  -0.767 1.227  H21 IRD 47 
IRD H22 H22 H 0 1 N N N 67.539 42.423 -0.341 2.427  -3.729 0.721  H22 IRD 48 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
IRD C18 C19 SING N N 1  
IRD C18 C17 SING N N 2  
IRD C19 C20 SING N N 3  
IRD C20 C10 SING N N 4  
IRD C17 C16 DOUB Y N 5  
IRD C17 C14 SING Y N 6  
IRD C16 N3  SING Y N 7  
IRD C10 N   SING Y N 8  
IRD C10 C11 DOUB Y N 9  
IRD N3  C15 DOUB Y N 10 
IRD N   C9  SING Y N 11 
IRD C14 C11 SING N N 12 
IRD C14 N1  DOUB Y N 13 
IRD C11 C12 SING Y N 14 
IRD C9  C12 DOUB Y N 15 
IRD C9  C8  SING Y N 16 
IRD C15 N1  SING Y N 17 
IRD C15 N2  SING N N 18 
IRD C12 C13 SING Y N 19 
IRD C8  C7  DOUB Y N 20 
IRD C13 C6  DOUB Y N 21 
IRD C7  C6  SING Y N 22 
IRD C6  C5  SING N N 23 
IRD C   C1  SING N N 24 
IRD C5  C4  TRIP N N 25 
IRD C4  C2  SING N N 26 
IRD C1  C2  SING N N 27 
IRD C2  O   SING N N 28 
IRD C2  C3  SING N N 29 
IRD O   H1  SING N N 30 
IRD C3  H2  SING N N 31 
IRD C3  H3  SING N N 32 
IRD C3  H4  SING N N 33 
IRD C1  H5  SING N N 34 
IRD C1  H6  SING N N 35 
IRD C   H7  SING N N 36 
IRD C   H8  SING N N 37 
IRD C   H9  SING N N 38 
IRD C13 H10 SING N N 39 
IRD C8  H11 SING N N 40 
IRD C7  H12 SING N N 41 
IRD C16 H13 SING N N 42 
IRD N2  H14 SING N N 43 
IRD N2  H15 SING N N 44 
IRD C18 H16 SING N N 45 
IRD C18 H17 SING N N 46 
IRD C19 H18 SING N N 47 
IRD C19 H19 SING N N 48 
IRD C20 H20 SING N N 49 
IRD C20 H21 SING N N 50 
IRD N   H22 SING N N 51 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
IRD InChI            InChI                1.06  "InChI=1S/C21H22N4O/c1-3-21(2,26)10-9-13-7-8-16-15(11-13)18-17(24-16)6-4-5-14-12-23-20(22)25-19(14)18/h7-8,11-12,24,26H,3-6H2,1-2H3,(H2,22,23,25)/t21-/m0/s1" 
IRD InChIKey         InChI                1.06  ALQLTPNCVCECNJ-NRFANRHFSA-N                                                                                                                                   
IRD SMILES_CANONICAL CACTVS               3.385 "CC[C@](C)(O)C#Cc1ccc2[nH]c3CCCc4cnc(N)nc4c3c2c1"                                                                                                             
IRD SMILES           CACTVS               3.385 "CC[C](C)(O)C#Cc1ccc2[nH]c3CCCc4cnc(N)nc4c3c2c1"                                                                                                              
IRD SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC[C@@](C)(C#Cc1ccc2c(c1)c-3c([nH]2)CCCc4c3nc(nc4)N)O"                                                                                                       
IRD SMILES           "OpenEye OEToolkits" 2.0.7 "CCC(C)(C#Cc1ccc2c(c1)c-3c([nH]2)CCCc4c3nc(nc4)N)O"                                                                                                           
# 
_pdbx_chem_comp_identifier.comp_id           IRD 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   3.1.0.0 
_pdbx_chem_comp_identifier.identifier        "(3~{S})-1-(4-azanyl-3,5,12-triazatetracyclo[9.7.0.0^{2,7}.0^{13,18}]octadeca-1(11),2,4,6,13(18),14,16-heptaen-16-yl)-3-methyl-pent-1-yn-3-ol" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
IRD "Create component"  2022-04-07 PDBE 
IRD "Modify descriptor" 2022-08-22 RCSB 
IRD "Initial release"   2023-04-19 RCSB 
# 
