data_JCD
#

_chem_comp.id                                   JCD
_chem_comp.name                                 "2'-{[2-(acetylamino)-2-deoxy-beta-D-galactopyranosyl]oxy}-5-nitro[1,1'-biphenyl]-3-carboxylic acid"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C21 H22 N2 O10"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2018-08-29
_chem_comp.pdbx_modified_date                   2019-08-30
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       462.407
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    JCD
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       6MAQ
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
JCD  N    N1   N   1  1  N  N  N  31.466   6.124  -22.578  -2.356  -1.947  -2.344  N    JCD   1  
JCD  C    C1   C   0  1  N  N  N  30.288   0.505  -29.509   5.157   0.965  -1.280  C    JCD   2  
JCD  O    O1   O   0  1  N  N  N  29.112   0.560  -28.691   5.022   2.387  -1.337  O    JCD   3  
JCD  C1   C2   C   0  1  N  N  R  31.464   1.185  -28.842   4.332   0.421  -0.111  C1   JCD   4  
JCD  C10  C3   C   0  1  Y  N  N  28.532   6.804  -25.635  -3.171   1.252   0.353  C10  JCD   5  
JCD  C11  C4   C   0  1  Y  N  N  28.219   6.849  -24.336  -4.138   0.276   0.113  C11  JCD   6  
JCD  C12  C5   C   0  1  N  N  N  26.817   7.187  -23.957  -5.448   0.347   0.792  C12  JCD   7  
JCD  C13  C6   C   0  1  Y  N  N  29.245   6.617  -23.278  -3.864  -0.770  -0.772  C13  JCD   8  
JCD  C14  C7   C   0  1  Y  N  N  30.512   6.336  -23.609  -2.641  -0.837  -1.408  C14  JCD   9  
JCD  C15  C8   C   0  1  Y  N  N  30.871   6.289  -25.092  -1.680   0.128  -1.173  C15  JCD  10  
JCD  C16  C9   C   0  1  N  N  R  32.749   2.546  -26.698   2.233  -1.302   0.862  C16  JCD  11  
JCD  C17  C10  C   0  1  N  N  N  33.900   3.931  -24.960   0.094  -2.042   1.765  C17  JCD  12  
JCD  C18  C11  C   0  1  N  N  N  35.100   4.807  -24.657  -0.769  -2.508   2.910  C18  JCD  13  
JCD  C19  C12  C   0  1  N  N  R  33.235   1.188  -27.138   3.699  -1.631   1.159  C19  JCD  14  
JCD  C2   C13  C   0  1  N  N  S  32.050   3.240  -27.852   2.082   0.212   0.692  C2   JCD  15  
JCD  C20  C14  C   0  1  N  N  R  32.064   0.403  -27.679   4.573  -1.084   0.027  C20  JCD  16  
JCD  C3   C15  C   0  1  Y  N  N  31.005   5.402  -28.160   0.398   1.837   0.275  C3   JCD  17  
JCD  C4   C16  C   0  1  Y  N  N  31.263   5.369  -29.527   1.359   2.810   0.502  C4   JCD  18  
JCD  C5   C17  C   0  1  Y  N  N  30.762   6.404  -30.288   1.024   4.148   0.411  C5   JCD  19  
JCD  C6   C18  C   0  1  Y  N  N  30.027   7.424  -29.750  -0.269   4.524   0.093  C6   JCD  20  
JCD  C7   C19  C   0  1  Y  N  N  29.766   7.450  -28.397  -1.236   3.565  -0.135  C7   JCD  21  
JCD  C8   C20  C   0  1  Y  N  N  30.248   6.448  -27.556  -0.909   2.214  -0.046  C8   JCD  22  
JCD  C9   C21  C   0  1  Y  N  N  29.939   6.497  -26.065  -1.943   1.180  -0.296  C9   JCD  23  
JCD  N1   N2   N   0  1  N  N  N  33.833   3.382  -26.248   1.394  -1.755   1.975  N1   JCD  24  
JCD  O1   O2   O   0  1  N  N  N  31.017   2.447  -28.406   2.944   0.660  -0.356  O1   JCD  25  
JCD  O2   O3   O   0  1  N  N  N  31.478   4.401  -27.304   0.727   0.522   0.359  O2   JCD  26  
JCD  O3   O4   O   0  1  N  N  N  26.427   7.021  -22.774  -6.380  -0.596   0.559  O3   JCD  27  
JCD  O4   O5   O   0  1  N  N  N  26.053   7.674  -24.818  -5.684   1.258   1.561  O4   JCD  28  
JCD  O5   O6   O  -1  1  N  N  N  32.613   6.519  -22.716  -1.276  -2.012  -2.902  O5   JCD  29  
JCD  O6   O7   O   0  1  N  N  N  31.134   5.574  -21.529  -3.201  -2.799  -2.553  O6   JCD  30  
JCD  O7   O8   O   0  1  N  N  N  33.063   3.711  -24.101  -0.382  -1.925   0.656  O7   JCD  31  
JCD  O8   O9   O   0  1  N  N  N  33.850   0.526  -26.044   3.862  -3.048   1.247  O8   JCD  32  
JCD  O9   O10  O   0  1  N  N  N  31.131   0.183  -26.620   4.232  -1.737  -1.198  O9   JCD  33  
JCD  H6   H1   H   0  1  N  N  N  30.081   1.007  -30.466   4.798   0.528  -2.212  H6   JCD  34  
JCD  H7   H2   H   0  1  N  N  N  30.544  -0.548  -29.696   6.206   0.705  -1.136  H7   JCD  35  
JCD  H5   H3   H   0  1  N  N  N  28.395   0.126  -29.137   5.520   2.800  -2.056  H5   JCD  36  
JCD  H    H4   H   0  1  N  N  N  32.251   1.319  -29.599   4.631   0.924   0.809  H    JCD  37  
JCD  H12  H5   H   0  1  N  N  N  27.771   6.989  -26.378  -3.377   2.062   1.036  H12  JCD  38  
JCD  H14  H6   H   0  1  N  N  N  28.964   6.676  -22.237  -4.611  -1.527  -0.960  H14  JCD  39  
JCD  H15  H7   H   0  1  N  N  N  31.892   6.085  -25.378  -0.725   0.069  -1.673  H15  JCD  40  
JCD  H2   H8   H   0  1  N  N  N  32.025   2.412  -25.881   1.924  -1.805  -0.054  H2   JCD  41  
JCD  H17  H9   H   0  1  N  N  N  35.047   5.154  -23.615  -0.728  -3.596   2.976  H17  JCD  42  
JCD  H18  H10  H   0  1  N  N  N  36.023   4.227  -24.804  -0.404  -2.073   3.840  H18  JCD  43  
JCD  H19  H11  H   0  1  N  N  N  35.100   5.675  -25.333  -1.798  -2.193   2.740  H19  JCD  44  
JCD  H3   H12  H   0  1  N  N  N  33.967   1.325  -27.948   3.992  -1.171   2.103  H3   JCD  45  
JCD  H1   H13  H   0  1  N  N  N  32.793   3.498  -28.621   2.351   0.711   1.623  H1   JCD  46  
JCD  H4   H14  H   0  1  N  N  N  32.431  -0.562  -28.059   5.623  -1.265   0.257  H4   JCD  47  
JCD  H8   H15  H   0  1  N  N  N  31.832   4.567  -29.973   2.369   2.523   0.751  H8   JCD  48  
JCD  H9   H16  H   0  1  N  N  N  30.958   6.409  -31.350   1.775   4.903   0.589  H9   JCD  49  
JCD  H10  H17  H   0  1  N  N  N  29.650   8.211  -30.387  -0.523   5.571   0.023  H10  JCD  50  
JCD  H11  H18  H   0  1  N  N  N  29.180   8.257  -27.983  -2.244   3.862  -0.382  H11  JCD  51  
JCD  H16  H19  H   0  1  N  N  N  34.576   3.581  -26.887   1.774  -1.849   2.862  H16  JCD  52  
JCD  H13  H20  H   0  1  N  N  N  25.527   7.315  -22.693  -7.222  -0.507   1.026  H13  JCD  53  
JCD  H20  H21  H   0  1  N  N  N  34.580   1.045  -25.729   4.768  -3.329   1.434  H20  JCD  54  
JCD  H21  H22  H   0  1  N  N  N  31.552  -0.306  -25.923   4.744  -1.435  -1.960  H21  JCD  55  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
JCD  C5   C6   DOUB  Y  N   1  
JCD  C5   C4   SING  Y  N   2  
JCD  C6   C7   SING  Y  N   3  
JCD  C4   C3   DOUB  Y  N   4  
JCD  C    C1   SING  N  N   5  
JCD  C    O    SING  N  N   6  
JCD  C1   O1   SING  N  N   7  
JCD  C1   C20  SING  N  N   8  
JCD  O1   C2   SING  N  N   9  
JCD  C7   C8   DOUB  Y  N  10  
JCD  C3   C8   SING  Y  N  11  
JCD  C3   O2   SING  N  N  12  
JCD  C2   O2   SING  N  N  13  
JCD  C2   C16  SING  N  N  14  
JCD  C20  C19  SING  N  N  15  
JCD  C20  O9   SING  N  N  16  
JCD  C8   C9   SING  N  N  17  
JCD  C19  C16  SING  N  N  18  
JCD  C19  O8   SING  N  N  19  
JCD  C16  N1   SING  N  N  20  
JCD  N1   C17  SING  N  N  21  
JCD  C9   C10  DOUB  Y  N  22  
JCD  C9   C15  SING  Y  N  23  
JCD  C10  C11  SING  Y  N  24  
JCD  C15  C14  DOUB  Y  N  25  
JCD  C17  C18  SING  N  N  26  
JCD  C17  O7   DOUB  N  N  27  
JCD  O4   C12  DOUB  N  N  28  
JCD  C11  C12  SING  N  N  29  
JCD  C11  C13  DOUB  Y  N  30  
JCD  C12  O3   SING  N  N  31  
JCD  C14  C13  SING  Y  N  32  
JCD  C14  N    SING  N  N  33  
JCD  O5   N    SING  N  N  34  
JCD  N    O6   DOUB  N  N  35  
JCD  C    H6   SING  N  N  36  
JCD  C    H7   SING  N  N  37  
JCD  O    H5   SING  N  N  38  
JCD  C1   H    SING  N  N  39  
JCD  C10  H12  SING  N  N  40  
JCD  C13  H14  SING  N  N  41  
JCD  C15  H15  SING  N  N  42  
JCD  C16  H2   SING  N  N  43  
JCD  C18  H17  SING  N  N  44  
JCD  C18  H18  SING  N  N  45  
JCD  C18  H19  SING  N  N  46  
JCD  C19  H3   SING  N  N  47  
JCD  C2   H1   SING  N  N  48  
JCD  C20  H4   SING  N  N  49  
JCD  C4   H8   SING  N  N  50  
JCD  C5   H9   SING  N  N  51  
JCD  C6   H10  SING  N  N  52  
JCD  C7   H11  SING  N  N  53  
JCD  N1   H16  SING  N  N  54  
JCD  O3   H13  SING  N  N  55  
JCD  O8   H20  SING  N  N  56  
JCD  O9   H21  SING  N  N  57  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
JCD  SMILES            ACDLabs               12.01  "[N+](=O)(c1cc(cc(c1)c3c(OC2C(NC(C)=O)C(O)C(C(CO)O2)O)cccc3)C(O)=O)[O-]"  
JCD  InChI             InChI                 1.03   "InChI=1S/C21H22N2O10/c1-10(25)22-17-19(27)18(26)16(9-24)33-21(17)32-15-5-3-2-4-14(15)11-6-12(20(28)29)8-13(7-11)23(30)31/h2-8,16-19,21,24,26-27H,9H2,1H3,(H,22,25)(H,28,29)/t16-,17-,18+,19-,21-/m1/s1"  
JCD  InChIKey          InChI                 1.03   MUERTXQUUVQXJH-GQUPQBGVSA-N  
JCD  SMILES_CANONICAL  CACTVS                3.385  "CC(=O)N[C@@H]1[C@@H](O)[C@@H](O)[C@@H](CO)O[C@H]1Oc2ccccc2c3cc(cc(c3)[N+]([O-])=O)C(O)=O"  
JCD  SMILES            CACTVS                3.385  "CC(=O)N[CH]1[CH](O)[CH](O)[CH](CO)O[CH]1Oc2ccccc2c3cc(cc(c3)[N+]([O-])=O)C(O)=O"  
JCD  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.6  "CC(=O)N[C@@H]1[C@H]([C@H]([C@H](O[C@H]1Oc2ccccc2c3cc(cc(c3)[N+](=O)[O-])C(=O)O)CO)O)O"  
JCD  SMILES            "OpenEye OEToolkits"  2.0.6  "CC(=O)NC1C(C(C(OC1Oc2ccccc2c3cc(cc(c3)[N+](=O)[O-])C(=O)O)CO)O)O"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
JCD  "SYSTEMATIC NAME"  ACDLabs               12.01  "2'-{[2-(acetylamino)-2-deoxy-beta-D-galactopyranosyl]oxy}-5-nitro[1,1'-biphenyl]-3-carboxylic acid"  
JCD  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.6  "3-[2-[(2~{S},3~{R},4~{R},5~{R},6~{R})-3-acetamido-6-(hydroxymethyl)-4,5-bis(oxidanyl)oxan-2-yl]oxyphenyl]-5-nitro-benzoic acid"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
JCD  "Create component"  2018-08-29  RCSB  
JCD  "Initial release"   2019-09-04  RCSB  
##
