data_MAD
# 
_chem_comp.id                                    MAD 
_chem_comp.name                                  "6-HYDRO-1-METHYLADENOSINE-5'-MONOPHOSPHATE" 
_chem_comp.type                                  "RNA LINKING" 
_chem_comp.pdbx_type                             ATOMN 
_chem_comp.formula                               "C11 H16 N5 O7 P" 
_chem_comp.mon_nstd_parent_comp_id               A 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2002-08-28 
_chem_comp.pdbx_modified_date                    2015-08-19 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   OBS 
_chem_comp.pdbx_replaced_by                      1MA 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        361.248 
_chem_comp.one_letter_code                       A 
_chem_comp.three_letter_code                     MAD 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        1H3E 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  EBI 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
MAD P      P      P 0 1 N N N 142.800 27.386 10.352 -5.057 1.020  -0.042 P      MAD 1  
MAD OP1    O1P    O 0 1 N N N 142.757 28.646 11.140 -6.259 -0.037 0.130  OP1    MAD 2  
MAD OP2    O2P    O 0 1 N N N 144.108 26.786 10.003 -4.827 1.718  1.243  OP2    MAD 3  
MAD "O5'"  "O5'"  O 0 1 N N N 141.945 26.262 11.096 -3.717 0.243  -0.478 "O5'"  MAD 4  
MAD "C5'"  "C5'"  C 0 1 N N N 140.694 26.576 11.748 -3.056 -0.702 0.365  "C5'"  MAD 5  
MAD "C4'"  "C4'"  C 0 1 N N R 140.855 26.500 13.252 -1.821 -1.250 -0.353 "C4'"  MAD 6  
MAD "O4'"  "O4'"  O 0 1 N N N 141.354 25.178 13.580 -0.851 -0.203 -0.526 "O4'"  MAD 7  
MAD "C3'"  "C3'"  C 0 1 N N S 141.905 27.480 13.783 -1.161 -2.349 0.503  "C3'"  MAD 8  
MAD "O3'"  "O3'"  O 0 1 N N N 141.627 27.818 15.141 -1.137 -3.589 -0.207 "O3'"  MAD 9  
MAD "C2'"  "C2'"  C 0 1 N N R 143.197 26.676 13.702 0.279  -1.832 0.740  "C2'"  MAD 10 
MAD "O2'"  "O2'"  O 0 1 N N N 144.172 27.108 14.635 1.227  -2.895 0.631  "O2'"  MAD 11 
MAD "C1'"  "C1'"  C 0 1 N N R 142.697 25.265 14.013 0.453  -0.814 -0.415 "C1'"  MAD 12 
MAD N9     N9     N 0 1 Y N N 143.449 24.181 13.384 1.464  0.189  -0.072 N9     MAD 13 
MAD C8     C8     C 0 1 Y N N 144.562 24.230 12.575 1.240  1.383  0.553  C8     MAD 14 
MAD N7     N7     N 0 1 Y N N 144.998 23.049 12.206 2.370  2.026  0.698  N7     MAD 15 
MAD C5     C5     C 0 1 Y N N 144.108 22.164 12.805 3.358  1.291  0.184  C5     MAD 16 
MAD C6     C6     C 0 1 N N N 144.020 20.763 12.807 4.812  1.495  0.055  C6     MAD 17 
MAD N6     N6     N 0 1 N N N 144.872 19.965 12.159 5.394  2.666  0.160  N6     MAD 18 
MAD N1     N1     N 0 1 N N N 143.006 20.204 13.510 5.504  0.306  -0.191 N1     MAD 19 
MAD CM1    CM1    C 0 1 N N N 142.816 18.726 13.587 6.886  0.142  0.264  CM1    MAD 20 
MAD C2     C2     C 0 1 N N N 142.150 20.995 14.157 4.871  -0.698 -0.861 C2     MAD 21 
MAD N3     N3     N 0 1 N N N 142.130 22.320 14.230 3.569  -0.830 -0.900 N3     MAD 22 
MAD C4     C4     C 0 1 Y N N 143.149 22.850 13.525 2.796  0.099  -0.310 C4     MAD 23 
MAD OXT    OXT    O 0 1 N Y N 142.025 27.617 8.968  -5.447 2.096  -1.175 OXT    MAD 24 
MAD H1P    H1P    H 0 1 N N N 143.643 28.929 11.335 -6.465 -0.533 -0.675 H1P    MAD 25 
MAD "H5'"  "H5'1" H 0 1 N N N 140.383 27.593 11.467 -2.751 -0.214 1.290  "H5'"  MAD 26 
MAD "H5''" "H5'2" H 0 0 N N N 139.927 25.856 11.428 -3.736 -1.523 0.594  "H5''" MAD 27 
MAD "H4'"  "H4'"  H 0 1 N N N 139.889 26.688 13.743 -2.106 -1.655 -1.324 "H4'"  MAD 28 
MAD "H3'"  "H3'"  H 0 1 N N N 141.962 28.370 13.139 -1.689 -2.463 1.450  "H3'"  MAD 29 
MAD HA     HA     H 0 1 N N N 142.285 28.426 15.458 -0.732 -4.316 0.285  HA     MAD 30 
MAD "H2'"  "H2'"  H 0 1 N N N 143.589 26.709 12.675 0.360  -1.339 1.709  "H2'"  MAD 31 
MAD HB     HB     H 0 1 N N N 144.955 26.577 14.544 1.101  -3.603 1.277  HB     MAD 32 
MAD "H1'"  "H1'"  H 0 1 N N N 142.735 25.130 15.104 0.717  -1.325 -1.341 "H1'"  MAD 33 
MAD H8     H8     H 0 1 N N N 145.032 25.154 12.273 0.274  1.743  0.878  H8     MAD 34 
MAD H6     H6     H 0 1 N N N 144.645 18.999 12.279 6.356  2.740  0.066  H6     MAD 35 
MAD HM11   HM11   H 0 0 N N N 141.936 18.501 14.207 6.890  -0.281 1.269  HM11   MAD 36 
MAD HM12   HM12   H 0 0 N N N 142.664 18.323 12.575 7.415  -0.528 -0.414 HM12   MAD 37 
MAD HM13   HM13   H 0 0 N N N 143.708 18.265 14.035 7.383  1.112  0.276  HM13   MAD 38 
MAD H2     H2     H 0 1 N N N 141.364 20.487 14.696 5.475  -1.423 -1.388 H2     MAD 39 
MAD HXT    HXT    H 0 1 N N N 142.569 27.322 8.247  -6.247 2.602  -0.978 HXT    MAD 40 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
MAD P     OP1    SING N N 1  
MAD P     OP2    DOUB N N 2  
MAD P     "O5'"  SING N N 3  
MAD P     OXT    SING N N 4  
MAD OP1   H1P    SING N N 5  
MAD "O5'" "C5'"  SING N N 6  
MAD "C5'" "C4'"  SING N N 7  
MAD "C5'" "H5'"  SING N N 8  
MAD "C5'" "H5''" SING N N 9  
MAD "C4'" "O4'"  SING N N 10 
MAD "C4'" "C3'"  SING N N 11 
MAD "C4'" "H4'"  SING N N 12 
MAD "O4'" "C1'"  SING N N 13 
MAD "C3'" "O3'"  SING N N 14 
MAD "C3'" "C2'"  SING N N 15 
MAD "C3'" "H3'"  SING N N 16 
MAD "O3'" HA     SING N N 17 
MAD "C2'" "O2'"  SING N N 18 
MAD "C2'" "C1'"  SING N N 19 
MAD "C2'" "H2'"  SING N N 20 
MAD "O2'" HB     SING N N 21 
MAD "C1'" N9     SING N N 22 
MAD "C1'" "H1'"  SING N N 23 
MAD N9    C8     SING Y N 24 
MAD N9    C4     SING Y N 25 
MAD C8    N7     DOUB Y N 26 
MAD C8    H8     SING N N 27 
MAD N7    C5     SING Y N 28 
MAD C5    C6     SING N N 29 
MAD C5    C4     DOUB Y N 30 
MAD C6    N6     DOUB N N 31 
MAD C6    N1     SING N N 32 
MAD N6    H6     SING N N 33 
MAD N1    CM1    SING N N 34 
MAD N1    C2     SING N N 35 
MAD CM1   HM11   SING N N 36 
MAD CM1   HM12   SING N N 37 
MAD CM1   HM13   SING N N 38 
MAD C2    N3     DOUB N N 39 
MAD C2    H2     SING N N 40 
MAD N3    C4     SING N N 41 
MAD OXT   HXT    SING N N 42 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
MAD SMILES           ACDLabs              12.01 "P(O)(=O)(OCC1OC(C(C1O)O)n2cnc3\C(=N)N(C)C=Nc23)O"                                                                                                                     
MAD InChI            InChI                1.03  "InChI=1S/C11H16N5O7P/c1-15-3-14-10-6(9(15)12)13-4-16(10)11-8(18)7(17)5(23-11)2-22-24(19,20)21/h3-5,7-8,11-12,17-18H,2H2,1H3,(H2,19,20,21)/b12-9-/t5-,7-,8-,11-/m1/s1" 
MAD InChIKey         InChI                1.03  BKBYKEWNXKDACS-JOLDIKRXSA-N                                                                                                                                            
MAD SMILES_CANONICAL CACTVS               3.385 "CN1C=Nc2n(cnc2C1=N)[C@@H]3O[C@H](CO[P](O)(O)=O)[C@@H](O)[C@H]3O"                                                                                                      
MAD SMILES           CACTVS               3.385 "CN1C=Nc2n(cnc2C1=N)[CH]3O[CH](CO[P](O)(O)=O)[CH](O)[CH]3O"                                                                                                            
MAD SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "[H]/N=C\1/c2c(n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)COP(=O)(O)O)O)O)N=CN1C"                                                                                              
MAD SMILES           "OpenEye OEToolkits" 1.7.6 "CN1C=Nc2c(ncn2C3C(C(C(O3)COP(=O)(O)O)O)O)C1=N"                                                                                                                        
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
MAD "SYSTEMATIC NAME" ACDLabs              12.01 
;1-methyladenosine 5'-(dihydrogen phosphate)
;
MAD "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "[(2R,3S,4R,5R)-5-(6-azanylidene-1-methyl-purin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl dihydrogen phosphate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
MAD "Create component"   2002-08-28 EBI  
MAD "Modify descriptor"  2011-06-04 RCSB 
MAD "Obsolete component" 2015-08-19 RCSB 
# 
