data_NFD
#

_chem_comp.id                                   NFD
_chem_comp.name                                 "Nicotinamide 2-fluoro-adenine dinucleotide"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C21 H26 F N7 O14 P2"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        2-fluoro-NAD+
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2009-07-14
_chem_comp.pdbx_modified_date                   2020-06-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       681.416
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    NFD
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       3I9J
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 PDBJ
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
NFD  PA      AP    P   0  1  N  N  N   1.511   2.012  19.371   0.693   2.895   1.168  AP    NFD   1  
NFD  PN      NP    P   0  1  N  N  N   0.547   4.667  20.238  -1.989   3.285  -0.032  NP    NFD   2  
NFD  N1A     AN1   N   0  1  Y  N  N   9.248   5.651  22.001   9.243  -2.434  -2.096  AN1   NFD   3  
NFD  O1A     AO1   O   0  1  N  N  N   0.943   1.036  18.342   0.212   3.242   2.524  AO1   NFD   4  
NFD  NN1     NN1   N   1  1  Y  N  N   3.221   8.245  17.334  -6.780  -1.438  -0.036  NN1   NFD   5  
NFD  O1N     NO1   O   0  1  N  N  N  -0.938   5.171  20.343  -2.562   3.779   1.315  NO1   NFD   6  
NFD  C2A     AC2   C   0  1  Y  N  N   8.439   4.564  22.099   8.682  -2.994  -1.037  AC2   NFD   7  
NFD  F2A     AF2   F   0  1  N  N  N   8.006   4.151  23.298   9.175  -4.167  -0.583  AF2   NFD   8  
NFD  O2A     AO2   O   0  1  N  N  N   1.759   1.658  20.779   1.522   4.133   0.559  AO2   NFD   9  
NFD  C2N     NC2   C   0  1  Y  N  N   4.009   7.922  16.282  -7.101  -2.690  -0.287  NC2   NFD  10  
NFD  O2N     NO2   O  -1  1  N  N  N   1.500   4.687  21.446  -1.803   4.487  -0.984  NO2   NFD  11  
NFD  O3      O3    O   0  1  N  N  N   0.381   3.248  19.408  -0.567   2.573   0.219  O3    NFD  12  
NFD  N3A     AN3   N   0  1  Y  N  N   8.039   3.878  21.006   7.660  -2.449  -0.408  AN3   NFD  13  
NFD  C3N     NC3   C   0  1  Y  N  N   5.323   7.423  16.494  -7.624  -3.503   0.719  NC3   NFD  14  
NFD  C4A     AC4   C   0  1  Y  N  N   8.440   4.242  19.758   7.146  -1.295  -0.823  AC4   NFD  15  
NFD  C4N     NC4   C   0  1  Y  N  N   5.792   7.241  17.780  -7.801  -2.966   1.999  NC4   NFD  16  
NFD  C5A     AC5   C   0  1  Y  N  N   9.274   5.355  19.629   7.707  -0.662  -1.944  AC5   NFD  17  
NFD  C5N     NC5   C   0  1  Y  N  N   4.951   7.566  18.848  -7.448  -1.644   2.211  NC5   NFD  18  
NFD  C6A     AC6   C   0  1  Y  N  N   9.671   6.067  20.781   8.796  -1.281  -2.582  AC6   NFD  19  
NFD  N6A     AN6   N   0  1  N  N  N  10.478   7.154  20.716   9.389  -0.703  -3.691  AN6   NFD  20  
NFD  C6N     NC6   C   0  1  Y  N  N   3.669   8.065  18.596  -6.936  -0.904   1.160  NC6   NFD  21  
NFD  N7A     AN7   N   0  1  Y  N  N   9.519   5.484  18.295   7.006   0.479  -2.151  AN7   NFD  22  
NFD  C7N     NC7   C   0  1  N  N  N   6.264   7.025  15.355  -7.986  -4.909   0.437  NC7   NFD  23  
NFD  NN7     NN7   N   0  1  N  N  N   5.982   7.438  14.103  -8.490  -5.684   1.418  NN7   NFD  24  
NFD  O7N     NO7   O   0  1  N  N  N   7.357   6.252  15.538  -7.828  -5.365  -0.678  NO7   NFD  25  
NFD  C8A     AC8   C   0  1  Y  N  N   8.857   4.500  17.624   6.073   0.584  -1.250  AC8   NFD  26  
NFD  N9A     AN9   N   0  1  Y  N  N   8.186   3.740  18.519   6.118  -0.487  -0.407  AN9   NFD  27  
NFD  "C1'A"  AC1*  C   0  0  N  N  R   7.366   2.517  18.219   5.231  -0.731   0.733  AC1*  NFD  28  
NFD  "C1'N"  NC1*  C   0  0  N  N  R   1.835   8.742  17.212  -6.227  -0.615  -1.116  NC1*  NFD  29  
NFD  "C2'A"  AC2*  C   0  0  N  N  R   7.598   1.645  19.447   5.874  -0.213   2.045  AC2*  NFD  30  
NFD  "O2'A"  AO2*  O   0  0  N  N  N   8.406   0.496  19.123   6.726  -1.204   2.622  AO2*  NFD  31  
NFD  "C2'N"  NC2*  C   0  0  N  N  R   1.193   8.232  15.950  -7.302   0.353  -1.658  NC2*  NFD  32  
NFD  "O2'N"  NO2*  O   0  0  N  N  N   0.769   9.456  15.369  -7.893  -0.170  -2.849  NO2*  NFD  33  
NFD  "C3'A"  AC3*  C   0  0  N  N  S   6.217   1.282  19.959   4.634   0.037   2.937  AC3*  NFD  34  
NFD  "O3'A"  AO3*  O   0  0  N  N  N   6.171  -0.150  20.061   4.417  -1.070   3.814  AO3*  NFD  35  
NFD  "C3'N"  NC3*  C   0  0  N  N  S  -0.046   7.381  16.384  -6.518   1.649  -1.966  NC3*  NFD  36  
NFD  "O3'N"  NO3*  O   0  0  N  N  N  -1.286   8.108  16.442  -6.601   1.965  -3.357  NO3*  NFD  37  
NFD  "C4'A"  AC4*  C   0  0  N  N  R   5.200   1.922  18.985   3.469   0.169   1.937  AC4*  NFD  38  
NFD  "O4'A"  AO4*  O   0  0  N  N  N   5.946   2.706  18.046   4.025   0.054   0.616  AO4*  NFD  39  
NFD  "C4'N"  NC4*  C   0  0  N  N  R   0.208   7.052  17.844  -5.063   1.310  -1.574  NC4*  NFD  40  
NFD  "O4'N"  NO4*  O   0  0  N  N  N   0.972   8.213  18.249  -5.180   0.241  -0.610  NO4*  NFD  41  
NFD  "C5'A"  AC5*  C   0  0  N  N  N   4.146   2.820  19.669   2.794   1.532   2.100  AC5*  NFD  42  
NFD  "O5'A"  AO5*  O   0  0  N  N  N   2.922   2.768  18.916   1.646   1.600   1.252  AO5*  NFD  43  
NFD  "C5'N"  NC5*  C   0  0  N  N  N   0.993   5.756  17.862  -4.385   2.526  -0.941  NC5*  NFD  44  
NFD  "O5'N"  NO5*  O   0  0  N  N  N   1.475   5.456  19.160  -3.009   2.229  -0.693  NO5*  NFD  45  
NFD  HAO2    HAO2  H   0  0  N  N  N   1.513   0.752  20.926   1.868   3.975  -0.330  HAO2  NFD  46  
NFD  HC2     HC2   H   0  1  N  N  N   3.637   8.044  15.275  -6.959  -3.091  -1.280  HC2   NFD  47  
NFD  HC4     HC4   H   0  1  N  N  N   6.786   6.856  17.956  -8.204  -3.566   2.802  HC4   NFD  48  
NFD  HC5     HC5   H   0  1  N  N  N   5.290   7.432  19.865  -7.571  -1.196   3.185  HC5   NFD  49  
NFD  HAN6    HAN6  H   0  0  N  N  N  10.646   7.501  21.639   9.054   0.139  -4.036  HAN6  NFD  50  
NFD  HANA    HANA  H   0  0  N  N  N  11.347   6.899  20.293  10.139  -1.140  -4.122  HANA  NFD  51  
NFD  HC6     HC6   H   0  1  N  N  N   3.024   8.311  19.427  -6.659   0.127   1.322  HC6   NFD  52  
NFD  HNN7    HNN7  H   0  0  N  N  N   6.575   7.171  13.343  -8.616  -5.320   2.308  HNN7  NFD  53  
NFD  HNNA    HNNA  H   0  0  N  N  N   5.180   8.011  13.934  -8.727  -6.607   1.233  HNNA  NFD  54  
NFD  HC8     HC8   H   0  1  N  N  N   8.867   4.352  16.554   5.367   1.398  -1.180  HC8   NFD  55  
NFD  "HC1'"  HC1*  H   0  0  N  N  N   7.680   2.108  17.247   4.995  -1.792   0.814  HC1*  NFD  56  
NFD  HC1A    HC1A  H   0  0  N  N  N   1.923   9.838  17.255  -5.846  -1.248  -1.917  HC1A  NFD  57  
NFD  "HC2'"  HC2*  H   0  0  N  N  N   8.165   2.169  20.230   6.421   0.714   1.871  HC2*  NFD  58  
NFD  "HO2'"  HO2*  H   0  0  N  N  N   8.536  -0.030  19.903   7.151  -0.927   3.445  HO2*  NFD  59  
NFD  HC2A    HC2A  H   0  0  N  N  N   1.817   7.615  15.286  -8.065   0.539  -0.902  HC2A  NFD  60  
NFD  HO2A    HO2A  H   0  0  N  N  N   0.335   9.281  14.542  -8.575   0.398  -3.232  HO2A  NFD  61  
NFD  "HC3'"  HC3*  H   0  0  N  N  N   5.970   1.666  20.960   4.754   0.958   3.509  HC3*  NFD  62  
NFD  "HO3'"  HO3*  H   0  0  N  N  N   5.317  -0.418  20.380   5.147  -1.235   4.427  HO3*  NFD  63  
NFD  HC3A    HC3A  H   0  0  N  N  N  -0.143   6.554  15.665  -6.895   2.476  -1.364  HC3A  NFD  64  
NFD  HO3A    HO3A  H   0  0  N  N  N  -1.984   7.523  16.712  -7.502   2.128  -3.671  HO3A  NFD  65  
NFD  "HC4'"  HC4*  H   0  0  N  N  N   4.635   1.107  18.509   2.743  -0.627   2.106  HC4*  NFD  66  
NFD  HC4A    HC4A  H   0  0  N  N  N  -0.657   6.891  18.504  -4.503   0.975  -2.447  HC4A  NFD  67  
NFD  "HC5'"  HC5*  H   0  0  N  N  N   3.964   2.461  20.693   2.487   1.663   3.138  HC5*  NFD  68  
NFD  HC5A    HC5A  H   0  0  N  N  N   4.513   3.856  19.706   3.495   2.320   1.826  HC5A  NFD  69  
NFD  HC5B    HC5B  H   0  0  N  N  N   0.335   4.939  17.531  -4.456   3.376  -1.620  HC5B  NFD  70  
NFD  HC5C    HC5C  H   0  0  N  N  N   1.850   5.852  17.180  -4.879   2.770  -0.001  HC5C  NFD  71  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
NFD  O1A     PA      DOUB  N  N   1  
NFD  "O5'A"  PA      SING  N  N   2  
NFD  PA      O3      SING  N  N   3  
NFD  PA      O2A     SING  N  N   4  
NFD  "O5'N"  PN      SING  N  N   5  
NFD  O3      PN      SING  N  N   6  
NFD  PN      O1N     DOUB  N  N   7  
NFD  PN      O2N     SING  N  N   8  
NFD  C6A     N1A     DOUB  Y  N   9  
NFD  N1A     C2A     SING  Y  N  10  
NFD  C2N     NN1     DOUB  Y  N  11  
NFD  "C1'N"  NN1     SING  N  N  12  
NFD  NN1     C6N     SING  Y  N  13  
NFD  N3A     C2A     DOUB  Y  N  14  
NFD  C2A     F2A     SING  N  N  15  
NFD  O2A     HAO2    SING  N  N  16  
NFD  C2N     C3N     SING  Y  N  17  
NFD  C2N     HC2     SING  N  N  18  
NFD  C4A     N3A     SING  Y  N  19  
NFD  C7N     C3N     SING  N  N  20  
NFD  C3N     C4N     DOUB  Y  N  21  
NFD  N9A     C4A     SING  Y  N  22  
NFD  C5A     C4A     DOUB  Y  N  23  
NFD  C4N     C5N     SING  Y  N  24  
NFD  C4N     HC4     SING  N  N  25  
NFD  N7A     C5A     SING  Y  N  26  
NFD  C5A     C6A     SING  Y  N  27  
NFD  C6N     C5N     DOUB  Y  N  28  
NFD  C5N     HC5     SING  N  N  29  
NFD  N6A     C6A     SING  N  N  30  
NFD  N6A     HAN6    SING  N  N  31  
NFD  N6A     HANA    SING  N  N  32  
NFD  C6N     HC6     SING  N  N  33  
NFD  C8A     N7A     DOUB  Y  N  34  
NFD  NN7     C7N     SING  N  N  35  
NFD  C7N     O7N     DOUB  N  N  36  
NFD  NN7     HNN7    SING  N  N  37  
NFD  NN7     HNNA    SING  N  N  38  
NFD  C8A     N9A     SING  Y  N  39  
NFD  C8A     HC8     SING  N  N  40  
NFD  "C1'A"  N9A     SING  N  N  41  
NFD  "O4'A"  "C1'A"  SING  N  N  42  
NFD  "C1'A"  "C2'A"  SING  N  N  43  
NFD  "C1'A"  "HC1'"  SING  N  N  44  
NFD  "C2'N"  "C1'N"  SING  N  N  45  
NFD  "C1'N"  "O4'N"  SING  N  N  46  
NFD  "C1'N"  HC1A    SING  N  N  47  
NFD  "O2'A"  "C2'A"  SING  N  N  48  
NFD  "C2'A"  "C3'A"  SING  N  N  49  
NFD  "C2'A"  "HC2'"  SING  N  N  50  
NFD  "O2'A"  "HO2'"  SING  N  N  51  
NFD  "O2'N"  "C2'N"  SING  N  N  52  
NFD  "C2'N"  "C3'N"  SING  N  N  53  
NFD  "C2'N"  HC2A    SING  N  N  54  
NFD  "O2'N"  HO2A    SING  N  N  55  
NFD  "C4'A"  "C3'A"  SING  N  N  56  
NFD  "C3'A"  "O3'A"  SING  N  N  57  
NFD  "C3'A"  "HC3'"  SING  N  N  58  
NFD  "O3'A"  "HO3'"  SING  N  N  59  
NFD  "C3'N"  "O3'N"  SING  N  N  60  
NFD  "C3'N"  "C4'N"  SING  N  N  61  
NFD  "C3'N"  HC3A    SING  N  N  62  
NFD  "O3'N"  HO3A    SING  N  N  63  
NFD  "O4'A"  "C4'A"  SING  N  N  64  
NFD  "C4'A"  "C5'A"  SING  N  N  65  
NFD  "C4'A"  "HC4'"  SING  N  N  66  
NFD  "C4'N"  "C5'N"  SING  N  N  67  
NFD  "C4'N"  "O4'N"  SING  N  N  68  
NFD  "C4'N"  HC4A    SING  N  N  69  
NFD  "O5'A"  "C5'A"  SING  N  N  70  
NFD  "C5'A"  "HC5'"  SING  N  N  71  
NFD  "C5'A"  HC5A    SING  N  N  72  
NFD  "C5'N"  "O5'N"  SING  N  N  73  
NFD  "C5'N"  HC5B    SING  N  N  74  
NFD  "C5'N"  HC5C    SING  N  N  75  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
NFD  SMILES_CANONICAL  CACTVS                3.352  "NC(=O)c1ccc[n+](c1)[C@@H]2O[C@H](CO[P]([O-])(=O)O[P](O)(=O)OC[C@H]3O[C@H]([C@H](O)[C@@H]3O)n4cnc5c(N)nc(F)nc45)[C@@H](O)[C@H]2O"  
NFD  SMILES            CACTVS                3.352  "NC(=O)c1ccc[n+](c1)[CH]2O[CH](CO[P]([O-])(=O)O[P](O)(=O)OC[CH]3O[CH]([CH](O)[CH]3O)n4cnc5c(N)nc(F)nc45)[CH](O)[CH]2O"  
NFD  SMILES_CANONICAL  "OpenEye OEToolkits"  1.7.0  "c1cc(c[n+](c1)[C@H]2[C@@H]([C@@H]([C@H](O2)CO[P@](=O)([O-])O[P@](=O)(O)OC[C@@H]3[C@H]([C@H]([C@@H](O3)n4cnc5c4nc(nc5N)F)O)O)O)O)C(=O)N"  
NFD  SMILES            "OpenEye OEToolkits"  1.7.0  "c1cc(c[n+](c1)C2C(C(C(O2)COP(=O)([O-])OP(=O)(O)OCC3C(C(C(O3)n4cnc5c4nc(nc5N)F)O)O)O)O)C(=O)N"  
NFD  InChI             InChI                 1.03   "InChI=1S/C21H26FN7O14P2/c22-21-26-16(23)11-18(27-21)29(7-25-11)20-15(33)13(31)10(42-20)6-40-45(37,38)43-44(35,36)39-5-9-12(30)14(32)19(41-9)28-3-1-2-8(4-28)17(24)34/h1-4,7,9-10,12-15,19-20,30-33H,5-6H2,(H5-,23,24,26,27,34,35,36,37,38)/t9-,10-,12-,13-,14-,15-,19-,20-/m1/s1"  
NFD  InChIKey          InChI                 1.03   JDJGJQAJEVFTBI-NAJQWHGHSA-N  
#
_pdbx_chem_comp_identifier.comp_id          NFD
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  1.6.1
_pdbx_chem_comp_identifier.identifier       "[(2R,3S,4R,5R)-5-(3-aminocarbonylpyridin-1-ium-1-yl)-3,4-dihydroxy-oxolan-2-yl]methyl [[(2R,3S,4R,5R)-5-(6-azanyl-2-fluoro-purin-9-yl)-3,4-dihydroxy-oxolan-2-yl]methoxy-hydroxy-phosphoryl] phosphate"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
NFD  "Create component"      2009-07-14  PDBJ  
NFD  "Modify aromatic_flag"  2011-06-04  RCSB  
NFD  "Modify descriptor"     2011-06-04  RCSB  
NFD  "Modify synonyms"       2020-06-05  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     NFD
_pdbx_chem_comp_synonyms.name        2-fluoro-NAD+
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
