data_OVD
# 
_chem_comp.id                                    OVD 
_chem_comp.name                                  "~{N}-[(2~{R},3~{R},4~{R},5~{S},6~{R})-6-(hydroxymethyl)-5-[(2~{S},3~{R},4~{S},5~{S},6~{R})-6-(hydroxymethyl)-3,5-bis(oxidanyl)-4-(1~{H}-1,2,3-triazol-4-ylmethoxy)oxan-2-yl]oxy-4-oxidanyl-2-propoxy-oxan-3-yl]ethanamide" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C20 H34 N4 O11" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2022-09-21 
_chem_comp.pdbx_modified_date                    2023-09-15 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        506.504 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     OVD 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8B0W 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
OVD C4  C1  C 0 1 N N S -1.880 31.042 17.470 1.235  -0.252 0.102  C4  OVD 1  
OVD C5  C2  C 0 1 N N R -3.222 31.472 18.025 1.853  -1.650 0.024  C5  OVD 2  
OVD C6  C3  C 0 1 N N N -3.752 30.474 19.040 1.054  -2.507 -0.960 C6  OVD 3  
OVD C7  C4  C 0 1 N N N -0.171 35.402 16.194 5.481  2.007  1.036  C7  OVD 4  
OVD C8  C5  C 0 1 N N N -0.057 36.387 14.971 6.334  2.797  1.995  C8  OVD 5  
OVD N2  N1  N 0 1 N N N -1.108 34.439 16.072 4.350  1.416  1.469  N2  OVD 6  
OVD C3  C6  C 0 1 N N R -1.488 32.074 16.444 2.076  0.618  1.043  C3  OVD 7  
OVD C1  C7  C 0 1 N N R -2.679 33.754 17.809 4.051  -0.785 0.442  C1  OVD 8  
OVD C2  C8  C 0 1 N N R -1.372 33.439 17.119 3.521  0.648  0.537  C2  OVD 9  
OVD CAF C9  C 0 1 N N N -2.827 36.097 17.795 6.011  -2.050 -0.108 CAF OVD 10 
OVD CAM C10 C 0 1 N N N -3.608 36.987 18.672 7.421  -1.913 -0.686 CAM OVD 11 
OVD CAO C11 C 0 1 N N N 2.211  28.120 18.305 -1.598 3.543  -1.660 CAO OVD 12 
OVD CAP C12 C 0 1 N N R -1.754 27.463 16.866 -2.487 -0.166 0.271  CAP OVD 13 
OVD CAQ C13 C 0 1 N N S -1.042 26.285 17.488 -3.551 0.371  -0.692 CAQ OVD 14 
OVD CAR C14 C 0 1 N N S 0.450  26.573 17.422 -3.299 1.862  -0.934 CAR OVD 15 
OVD CAS C15 C 0 1 N N R 0.705  27.913 18.139 -1.879 2.051  -1.473 CAS OVD 16 
OVD CAU C16 C 0 1 N N S -1.347 28.758 17.531 -1.099 0.101  -0.315 CAU OVD 17 
OVD CAY C17 C 0 1 N N N -3.608 38.460 18.479 8.097  -3.285 -0.713 CAY OVD 18 
OVD CAZ C18 C 0 1 N N N -0.680 24.082 17.359 -5.460 -1.059 -0.451 CAZ OVD 19 
OVD CBA C19 C 0 1 Y N N -1.286 22.863 16.590 -6.816 -1.142 0.202  CBA OVD 20 
OVD CBB C20 C 0 1 Y N N -2.571 22.530 16.569 -7.397 -0.203 0.984  CBB OVD 21 
OVD NBC N2  N 0 1 Y N N -2.633 21.456 15.785 -8.602 -0.704 1.342  NBC OVD 22 
OVD NBD N3  N 0 1 Y N N -1.455 21.191 15.367 -8.729 -1.868 0.808  NBD OVD 23 
OVD NBE N4  N 0 1 Y N N -0.635 22.000 15.810 -7.684 -2.156 0.117  NBE OVD 24 
OVD O1  O1  O 0 1 N N N -2.542 34.934 18.614 5.380  -0.768 -0.083 O1  OVD 25 
OVD O3  O2  O 0 1 N N N -0.240 31.761 15.855 1.549  1.946  1.065  O3  OVD 26 
OVD O4  O3  O 0 1 N N N -2.025 29.779 16.838 -0.100 -0.347 0.604  O4  OVD 27 
OVD O5  O4  O 0 1 N N N -3.066 32.715 18.719 3.207  -1.547 -0.423 O5  OVD 28 
OVD O6  O5  O 0 1 N N N -2.848 30.432 20.142 1.557  -3.845 -0.944 O6  OVD 29 
OVD O7  O6  O 0 1 N N N 0.546  35.523 17.194 5.812  1.903  -0.126 O7  OVD 30 
OVD OAN O7  O 0 1 N N N -3.164 27.283 17.000 -2.669 -1.572 0.447  OAN OVD 31 
OVD OAT O8  O 0 1 N N N 0.089  28.982 17.413 -0.941 1.503  -0.544 OAT OVD 32 
OVD OAV O9  O 0 1 N N N 0.849  26.591 15.996 -3.442 2.576  0.296  OAV OVD 33 
OVD OAW O10 O 0 1 N N N 2.479  29.473 18.707 -0.318 3.714  -2.272 OAW OVD 34 
OVD OAX O11 O 0 1 N N N -1.387 25.129 16.756 -4.848 0.190  -0.120 OAX OVD 35 
OVD H4  H1  H 0 1 N N N -1.132 31.005 18.276 1.220  0.196  -0.891 H4  OVD 36 
OVD H5  H2  H 0 1 N N N -3.944 31.575 17.201 1.831  -2.113 1.011  H5  OVD 37 
OVD H62 H3  H 0 1 N N N -4.747 30.790 19.387 0.004  -2.510 -0.669 H62 OVD 38 
OVD H61 H4  H 0 1 N N N -3.823 29.478 18.579 1.152  -2.094 -1.963 H61 OVD 39 
OVD H82 H5  H 0 1 N N N 0.722  37.136 15.174 7.200  3.197  1.467  H82 OVD 40 
OVD H81 H6  H 0 1 N N N 0.207  35.819 14.067 5.750  3.618  2.409  H81 OVD 41 
OVD H83 H7  H 0 1 N N N -1.021 36.894 14.817 6.670  2.146  2.803  H83 OVD 42 
OVD H22 H8  H 0 1 N N N -1.648 34.403 15.231 4.085  1.499  2.399  H22 OVD 43 
OVD H31 H9  H 0 1 N N N -2.271 32.127 15.673 2.050  0.197  2.048  H31 OVD 44 
OVD H1  H10 H 0 1 N N N -3.460 33.903 17.049 4.057  -1.237 1.434  H1  OVD 45 
OVD H21 H11 H 0 1 N N N -0.553 33.423 17.853 3.553  1.115  -0.448 H21 OVD 46 
OVD HAF H12 H 0 1 N N N -1.894 36.586 17.477 5.428  -2.730 -0.730 HAF OVD 47 
OVD H63 H13 H 0 1 N N N -3.413 35.813 16.908 6.070  -2.446 0.905  H63 OVD 48 
OVD HAM H14 H 0 1 N N N -4.656 36.663 18.590 7.362  -1.517 -1.700 HAM OVD 49 
OVD H2  H15 H 0 1 N N N -3.248 36.808 19.696 8.004  -1.233 -0.064 H2  OVD 50 
OVD HAO H16 H 0 1 N N N 2.591  27.430 19.072 -2.367 3.980  -2.298 HAO OVD 51 
OVD H64 H17 H 0 1 N N N 2.714  27.918 17.348 -1.607 4.039  -0.690 H64 OVD 52 
OVD HAP H18 H 0 1 N N N -1.485 27.515 15.801 -2.581 0.337  1.234  HAP OVD 53 
OVD HAQ H19 H 0 1 N N N -1.347 26.187 18.540 -3.491 -0.167 -1.638 HAQ OVD 54 
OVD HAR H20 H 0 1 N N N 0.995  25.777 17.950 -4.018 2.240  -1.661 HAR OVD 55 
OVD HAS H21 H 0 1 N N N 0.258  27.850 19.142 -1.783 1.540  -2.431 HAS OVD 56 
OVD HAU H22 H 0 1 N N N -1.643 28.736 18.590 -0.992 -0.435 -1.258 HAU OVD 57 
OVD H3  H23 H 0 1 N N N -4.252 38.930 19.237 7.514  -3.965 -1.335 H3  OVD 58 
OVD HAY H24 H 0 1 N N N -2.582 38.843 18.582 9.101  -3.188 -1.125 HAY OVD 59 
OVD H65 H25 H 0 1 N N N -3.990 38.698 17.475 8.156  -3.681 0.301  H65 OVD 60 
OVD HAZ H26 H 0 1 N N N -0.881 24.023 18.439 -4.833 -1.876 -0.092 HAZ OVD 61 
OVD H66 H27 H 0 1 N N N 0.403  24.172 17.192 -5.571 -1.134 -1.532 H66 OVD 62 
OVD HBB H28 H 0 1 N N N -3.387 23.023 17.077 -6.983 0.754  1.265  HBB OVD 63 
OVD HBC H29 H 0 1 N N N -3.462 20.943 15.561 -9.256 -0.263 1.906  HBC OVD 64 
OVD H32 H30 H 0 1 N N N -0.294 30.913 15.430 2.038  2.553  1.636  H32 OVD 65 
OVD H67 H31 H 0 1 N N N -3.164 29.812 20.788 1.096  -4.445 -1.546 H67 OVD 66 
OVD HAN H32 H 0 1 N N N -3.616 28.022 16.610 -2.028 -1.980 1.046  HAN OVD 67 
OVD HAV H33 H 0 1 N N N 1.780  26.770 15.929 -3.296 3.529  0.217  HAV OVD 68 
OVD HAW H34 H 0 1 N N N 3.416  29.594 18.808 -0.074 4.638  -2.421 HAW OVD 69 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
OVD C8  C7  SING N N 1  
OVD NBD NBC SING Y N 2  
OVD NBD NBE DOUB Y N 3  
OVD NBC CBB SING Y N 4  
OVD NBE CBA SING Y N 5  
OVD O3  C3  SING N N 6  
OVD OAV CAR SING N N 7  
OVD N2  C7  SING N N 8  
OVD N2  C2  SING N N 9  
OVD C7  O7  DOUB N N 10 
OVD C3  C2  SING N N 11 
OVD C3  C4  SING N N 12 
OVD CBB CBA DOUB Y N 13 
OVD CBA CAZ SING N N 14 
OVD OAX CAZ SING N N 15 
OVD OAX CAQ SING N N 16 
OVD O4  C4  SING N N 17 
OVD O4  CAU SING N N 18 
OVD CAP OAN SING N N 19 
OVD CAP CAQ SING N N 20 
OVD CAP CAU SING N N 21 
OVD C2  C1  SING N N 22 
OVD OAT CAU SING N N 23 
OVD OAT CAS SING N N 24 
OVD CAR CAQ SING N N 25 
OVD CAR CAS SING N N 26 
OVD C4  C5  SING N N 27 
OVD CAF O1  SING N N 28 
OVD CAF CAM SING N N 29 
OVD C1  O1  SING N N 30 
OVD C1  O5  SING N N 31 
OVD C5  O5  SING N N 32 
OVD C5  C6  SING N N 33 
OVD CAS CAO SING N N 34 
OVD CAO OAW SING N N 35 
OVD CAY CAM SING N N 36 
OVD C6  O6  SING N N 37 
OVD C4  H4  SING N N 38 
OVD C5  H5  SING N N 39 
OVD C6  H62 SING N N 40 
OVD C6  H61 SING N N 41 
OVD C8  H82 SING N N 42 
OVD C8  H81 SING N N 43 
OVD C8  H83 SING N N 44 
OVD N2  H22 SING N N 45 
OVD C3  H31 SING N N 46 
OVD C1  H1  SING N N 47 
OVD C2  H21 SING N N 48 
OVD CAF HAF SING N N 49 
OVD CAF H63 SING N N 50 
OVD CAM HAM SING N N 51 
OVD CAM H2  SING N N 52 
OVD CAO HAO SING N N 53 
OVD CAO H64 SING N N 54 
OVD CAP HAP SING N N 55 
OVD CAQ HAQ SING N N 56 
OVD CAR HAR SING N N 57 
OVD CAS HAS SING N N 58 
OVD CAU HAU SING N N 59 
OVD CAY H3  SING N N 60 
OVD CAY HAY SING N N 61 
OVD CAY H65 SING N N 62 
OVD CAZ HAZ SING N N 63 
OVD CAZ H66 SING N N 64 
OVD CBB HBB SING N N 65 
OVD NBC HBC SING N N 66 
OVD O3  H32 SING N N 67 
OVD O6  H67 SING N N 68 
OVD OAN HAN SING N N 69 
OVD OAV HAV SING N N 70 
OVD OAW HAW SING N N 71 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
OVD InChI            InChI                1.06    "InChI=1S/C20H34N4O11/c1-3-4-31-19-13(22-9(2)27)15(29)17(12(7-26)34-19)35-20-16(30)18(14(28)11(6-25)33-20)32-8-10-5-21-24-23-10/h5,11-20,25-26,28-30H,3-4,6-8H2,1-2H3,(H,22,27)(H,21,23,24)/t11-,12-,13-,14+,15-,16-,17-,18+,19-,20+/m1/s1" 
OVD InChIKey         InChI                1.06    BHUHIMJWCDUIMU-MRHFAZSRSA-N                                                                                                                                                                                                                 
OVD SMILES_CANONICAL CACTVS               3.385   "CCCO[C@@H]1O[C@H](CO)[C@@H](O[C@@H]2O[C@H](CO)[C@H](O)[C@H](OCc3c[nH]nn3)[C@H]2O)[C@H](O)[C@H]1NC(C)=O"                                                                                                                                    
OVD SMILES           CACTVS               3.385   "CCCO[CH]1O[CH](CO)[CH](O[CH]2O[CH](CO)[CH](O)[CH](OCc3c[nH]nn3)[CH]2O)[CH](O)[CH]1NC(C)=O"                                                                                                                                                 
OVD SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "CCCO[C@H]1[C@@H]([C@H]([C@@H]([C@H](O1)CO)O[C@H]2[C@@H]([C@H]([C@H]([C@H](O2)CO)O)OCc3c[nH]nn3)O)O)NC(=O)C"                                                                                                                                
OVD SMILES           "OpenEye OEToolkits" 3.1.0.0 "CCCOC1C(C(C(C(O1)CO)OC2C(C(C(C(O2)CO)O)OCc3c[nH]nn3)O)O)NC(=O)C"                                                                                                                                                                           
# 
_pdbx_chem_comp_identifier.comp_id           OVD 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   3.1.0.0 
_pdbx_chem_comp_identifier.identifier        "~{N}-[(2~{R},3~{R},4~{R},5~{S},6~{R})-6-(hydroxymethyl)-5-[(2~{S},3~{R},4~{S},5~{S},6~{R})-6-(hydroxymethyl)-3,5-bis(oxidanyl)-4-(1~{H}-1,2,3-triazol-4-ylmethoxy)oxan-2-yl]oxy-4-oxidanyl-2-propoxy-oxan-3-yl]ethanamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
OVD "Create component" 2022-09-21 PDBE 
OVD "Modify formula"   2022-09-30 PDBE 
OVD "Initial release"  2023-09-20 RCSB 
# 
