data_PMD
# 
_chem_comp.id                                    PMD 
_chem_comp.name                                  "[N-(2,4-DIAMINOPTERIDIN-6-YL)-METHYL]-DIBENZ[B,F]AZEPINE" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C21 H17 N7" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2002-01-08 
_chem_comp.pdbx_modified_date                    2011-06-04 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        367.407 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     PMD 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        ? 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        1KLK 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
PMD C2B    C2*    C 0 1 Y N N 10.428 2.336 11.653 -0.371 0.432  5.218  C2B    PMD 1  
PMD C4B    C4*    C 0 1 Y N N 11.244 3.848 13.341 0.810  -0.645 3.546  C4B    PMD 2  
PMD C4     C4     C 0 1 Y N N 12.491 3.950 12.656 -0.278 -0.316 2.625  C4     PMD 3  
PMD C6B    C6*    C 0 1 Y N N 14.743 4.759 12.428 -1.261 -0.352 0.562  C6B    PMD 4  
PMD C7B    C7*    C 0 1 Y N N 14.866 3.997 11.211 -2.350 0.360  1.062  C7B    PMD 5  
PMD C8     C8     C 0 1 Y N N 12.642 3.183 11.442 -1.383 0.408  3.138  C8     PMD 6  
PMD C9B    C9*    C 0 1 N N N 15.990 5.579 12.939 -1.237 -0.756 -0.889 C9B    PMD 7  
PMD "C0'"  "C0'"  C 0 1 Y N N 18.161 6.530 12.367 -0.772 -0.008 -3.004 "C0'"  PMD 8  
PMD "C1'"  "C1'"  C 0 1 Y N N 18.422 6.266 13.770 -1.568 -1.208 -3.343 "C1'"  PMD 9  
PMD "C2'"  "C2'"  C 0 1 Y N N 19.739 6.323 14.283 -1.840 -1.495 -4.595 "C2'"  PMD 10 
PMD "C3'"  "C3'"  C 0 1 Y N N 20.817 6.567 13.407 -1.351 -0.617 -5.672 "C3'"  PMD 11 
PMD "C4'"  "C4'"  C 0 1 Y N N 20.588 6.799 12.033 -0.641 0.447  -5.373 "C4'"  PMD 12 
PMD "C5'"  "C5'"  C 0 1 Y N N 19.280 6.853 11.478 -0.332 0.766  -3.964 "C5'"  PMD 13 
PMD "C6'"  "C6'"  C 0 1 N N N 19.195 7.073 9.957  0.475  1.955  -3.671 "C6'"  PMD 14 
PMD C6     C6     C 0 1 N N N 18.124 7.453 9.221  1.389  2.008  -2.755 C6     PMD 15 
PMD "C7'"  "C7'"  C 0 1 Y N N 16.708 7.749 9.722  1.747  0.887  -1.878 "C7'"  PMD 16 
PMD "C8'"  "C8'"  C 0 1 Y N N 15.866 8.481 8.809  3.170  0.673  -1.545 "C8'"  PMD 17 
PMD "C9'"  "C9'"  C 0 1 Y N N 14.522 8.814 9.137  3.527  -0.323 -0.766 "C9'"  PMD 18 
PMD "CA'"  "'C10" C 0 1 Y N N 13.965 8.402 10.379 2.500  -1.230 -0.224 "CA'"  PMD 19 
PMD "CB'"  "'C11" C 0 1 Y N N 14.731 7.604 11.261 1.235  -1.037 -0.519 "CB'"  PMD 20 
PMD "CC'"  "'C12" C 0 1 Y N N 16.106 7.249 10.972 0.833  0.084  -1.394 "CC'"  PMD 21 
PMD "N1'"  N1*    N 0 1 Y N N 11.608 2.418 10.974 -1.380 0.750  4.433  "N1'"  PMD 22 
PMD "N2'"  N2*    N 0 1 N N N 9.443  1.544 11.179 -0.426 0.818  6.544  "N2'"  PMD 23 
PMD "N3'"  N3*    N 0 1 Y N N 10.256 3.051 12.808 0.695  -0.245 4.804  "N3'"  PMD 24 
PMD "N4'"  N4*    N 0 1 N N N 11.027 4.525 14.489 1.916  -1.347 3.120  "N4'"  PMD 25 
PMD "N5'"  N5*    N 0 1 Y N N 13.560 4.717 13.126 -0.254 -0.674 1.345  "N5'"  PMD 26 
PMD "N8'"  N8*    N 0 1 Y N N 13.821 3.244 10.754 -2.394 0.724  2.326  "N8'"  PMD 27 
PMD "N0'"  "N0'"  N 0 1 N N N 16.834 6.241 11.821 -0.514 0.257  -1.668 "N0'"  PMD 28 
PMD "H7'1" 1H7*   H 0 0 N N N 15.792 4.021 10.655 -3.167 0.616  0.404  "H7'1" PMD 29 
PMD "H9'1" 1H9*   H 0 0 N N N 16.651 4.860 13.446 -0.734 -1.718 -0.989 "H9'1" PMD 30 
PMD "H9'2" 2H9*   H 0 0 N N N 15.619 6.379 13.597 -2.258 -0.840 -1.260 "H9'2" PMD 31 
PMD "H1'1" "1H1'" H 0 0 N N N 17.602 6.023 14.429 -1.928 -1.853 -2.555 "H1'1" PMD 32 
PMD "H2'1" "1H2'" H 0 0 N N N 19.918 6.181 15.339 -2.421 -2.373 -4.835 "H2'1" PMD 33 
PMD "H3'1" "1H3'" H 0 0 N N N 21.827 6.577 13.790 -1.575 -0.847 -6.703 "H3'1" PMD 34 
PMD "H4'1" "1H4'" H 0 0 N N N 21.437 6.940 11.380 -0.281 1.091  -6.161 "H4'1" PMD 35 
PMD "H6'1" "1H6'" H 0 0 N N N 20.108 6.902 9.406  0.297  2.844  -4.257 "H6'1" PMD 36 
PMD H61    1H6    H 0 1 N N N 18.287 7.560 8.159  1.922  2.938  -2.629 H61    PMD 37 
PMD "H8'1" "1H8'" H 0 0 N N N 16.265 8.784 7.852  3.922  1.339  -1.943 "H8'1" PMD 38 
PMD H9B    "1H9'" H 0 1 N N N 13.923 9.382 8.440  4.568  -0.477 -0.525 H9B    PMD 39 
PMD "H10'" "'H10" H 0 0 N N N 12.961 8.697 10.648 2.788  -2.052 0.414  "H10'" PMD 40 
PMD "H11'" "'H11" H 0 0 N N N 14.278 7.249 12.175 0.484  -1.704 -0.121 "H11'" PMD 41 
PMD HN21   1HN2   H 0 0 N N N 9.499  0.992 10.347 0.300  0.594  7.145  HN21   PMD 42 
PMD HN22   2HN2   H 0 0 N N N 8.649  1.592 11.785 -1.191 1.317  6.872  HN22   PMD 43 
PMD HN41   1HN4   H 0 0 N N N 10.183 4.509 15.026 2.661  -1.493 3.725  HN41   PMD 44 
PMD HN42   2HN4   H 0 0 N N N 11.851 5.045 14.713 1.951  -1.696 2.216  HN42   PMD 45 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
PMD C2B   "N1'"  DOUB Y N 1  
PMD C2B   "N2'"  SING N N 2  
PMD C2B   "N3'"  SING Y N 3  
PMD C4B   C4     SING Y N 4  
PMD C4B   "N3'"  DOUB Y N 5  
PMD C4B   "N4'"  SING N N 6  
PMD C4    C8     DOUB Y N 7  
PMD C4    "N5'"  SING Y N 8  
PMD C6B   C7B    SING Y N 9  
PMD C6B   C9B    SING N N 10 
PMD C6B   "N5'"  DOUB Y N 11 
PMD C7B   "N8'"  DOUB Y N 12 
PMD C7B   "H7'1" SING N N 13 
PMD C8    "N1'"  SING Y N 14 
PMD C8    "N8'"  SING Y N 15 
PMD C9B   "N0'"  SING N N 16 
PMD C9B   "H9'1" SING N N 17 
PMD C9B   "H9'2" SING N N 18 
PMD "C0'" "C1'"  DOUB Y N 19 
PMD "C0'" "C5'"  SING Y N 20 
PMD "C0'" "N0'"  SING N N 21 
PMD "C1'" "C2'"  SING Y N 22 
PMD "C1'" "H1'1" SING N N 23 
PMD "C2'" "C3'"  DOUB Y N 24 
PMD "C2'" "H2'1" SING N N 25 
PMD "C3'" "C4'"  SING Y N 26 
PMD "C3'" "H3'1" SING N N 27 
PMD "C4'" "C5'"  DOUB Y N 28 
PMD "C4'" "H4'1" SING N N 29 
PMD "C5'" "C6'"  SING N N 30 
PMD "C6'" C6     DOUB N N 31 
PMD "C6'" "H6'1" SING N N 32 
PMD C6    "C7'"  SING N N 33 
PMD C6    H61    SING N N 34 
PMD "C7'" "C8'"  DOUB Y N 35 
PMD "C7'" "CC'"  SING Y N 36 
PMD "C8'" "C9'"  SING Y N 37 
PMD "C8'" "H8'1" SING N N 38 
PMD "C9'" "CA'"  DOUB Y N 39 
PMD "C9'" H9B    SING N N 40 
PMD "CA'" "CB'"  SING Y N 41 
PMD "CA'" "H10'" SING N N 42 
PMD "CB'" "CC'"  DOUB Y N 43 
PMD "CB'" "H11'" SING N N 44 
PMD "CC'" "N0'"  SING N N 45 
PMD "N2'" HN21   SING N N 46 
PMD "N2'" HN22   SING N N 47 
PMD "N4'" HN41   SING N N 48 
PMD "N4'" HN42   SING N N 49 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
PMD SMILES           ACDLabs              10.04 "n1cc(nc2c1nc(nc2N)N)CN5c3ccccc3C=Cc4c5cccc4"                                                                                                  
PMD SMILES_CANONICAL CACTVS               3.341 "Nc1nc(N)c2nc(CN3c4ccccc4C=Cc5ccccc35)cnc2n1"                                                                                                  
PMD SMILES           CACTVS               3.341 "Nc1nc(N)c2nc(CN3c4ccccc4C=Cc5ccccc35)cnc2n1"                                                                                                  
PMD SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "c1ccc2c(c1)C=Cc3ccccc3N2Cc4cnc5c(n4)c(nc(n5)N)N"                                                                                              
PMD SMILES           "OpenEye OEToolkits" 1.5.0 "c1ccc2c(c1)C=Cc3ccccc3N2Cc4cnc5c(n4)c(nc(n5)N)N"                                                                                              
PMD InChI            InChI                1.03  "InChI=1S/C21H17N7/c22-19-18-20(27-21(23)26-19)24-11-15(25-18)12-28-16-7-3-1-5-13(16)9-10-14-6-2-4-8-17(14)28/h1-11H,12H2,(H4,22,23,24,26,27)" 
PMD InChIKey         InChI                1.03  NXCCIJQEAKMFGW-UHFFFAOYSA-N                                                                                                                    
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
PMD "SYSTEMATIC NAME" ACDLabs              10.04 "6-(5H-dibenzo[b,f]azepin-5-ylmethyl)pteridine-2,4-diamine"  
PMD "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "6-(benzo[b][1]benzazepin-11-ylmethyl)pteridine-2,4-diamine" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
PMD "Create component"  2002-01-08 RCSB 
PMD "Modify descriptor" 2011-06-04 RCSB 
# 
