data_PPD
#

_chem_comp.id                                   PPD
_chem_comp.name                                 "2-[(3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHYLENE)-AMINO]-SUCCINIC ACID"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C12 H17 N2 O9 P"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "PYRIDOXYL-ASPARTIC ACID-5-MONOPHOSPHATE"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    1999-07-08
_chem_comp.pdbx_modified_date                   2020-06-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       364.245
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    PPD
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       ?
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       1ARG
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
PPD  N1    N1    N  0  1  Y  N  N   3.702  26.817  26.653   3.866   0.664   0.325  N1    PPD   1  
PPD  C2    C2    C  0  1  Y  N  N   4.696  25.987  26.333   3.811   0.436  -0.971  C2    PPD   2  
PPD  C2A   C2A   C  0  1  N  N  N   4.685  24.596  26.925   5.015   0.723  -1.831  C2A   PPD   3  
PPD  C3    C3    C  0  1  Y  N  N   5.665  26.480  25.447   2.654  -0.058  -1.554  C3    PPD   4  
PPD  O3    O3    O  0  1  N  N  N   6.669  25.635  25.154   2.601  -0.291  -2.892  O3    PPD   5  
PPD  C4    C4    C  0  1  Y  N  N   5.598  27.784  24.957   1.551  -0.324  -0.748  C4    PPD   6  
PPD  C4A   C4A   C  0  1  N  N  N   6.572  28.321  24.061   0.276  -0.868  -1.338  C4A   PPD   7  
PPD  C5    C5    C  0  1  Y  N  N   4.493  28.563  25.342   1.653  -0.070   0.609  C5    PPD   8  
PPD  C6    C6    C  0  1  Y  N  N   3.556  28.081  26.198   2.838   0.429   1.116  C6    PPD   9  
PPD  C5A   C5A   C  0  1  N  N  N   4.436  30.041  24.868   0.485  -0.335   1.524  C5A   PPD  10  
PPD  O4P   O4P   O  0  1  N  N  N   4.029  30.126  23.516   0.842   0.005   2.865  O4P   PPD  11  
PPD  P     P     P  0  1  N  N  N   3.836  31.483  22.721  -0.444  -0.300   3.782  P     PPD  12  
PPD  O1P   O1P   O  0  1  N  N  N   2.706  31.225  21.816  -0.792  -1.735   3.680  O1P   PPD  13  
PPD  O2P   O2P   O  0  1  N  N  N   5.191  31.700  22.013  -0.110   0.063   5.314  O2P   PPD  14  
PPD  O3P   O3P   O  0  1  N  N  N   3.616  32.601  23.645  -1.687   0.589   3.277  O3P   PPD  15  
PPD  N     N     N  0  1  N  N  N   7.885  27.733  24.396  -0.593   0.245  -1.737  N     PPD  16  
PPD  CA    CA    C  0  1  N  N  S   9.038  27.849  23.486  -1.811  -0.351  -2.301  CA    PPD  17  
PPD  CB    CB    C  0  1  N  N  N   9.372  29.277  23.155  -2.998   0.581  -2.053  CB    PPD  18  
PPD  CG    CG    C  0  1  N  N  N   9.643  30.163  24.347  -3.177   0.782  -0.570  CG    PPD  19  
PPD  OD1   OD1   O  0  1  N  N  N   9.528  31.404  24.187  -2.432   0.235   0.207  OD1   PPD  20  
PPD  OD2   OD2   O  0  1  N  N  N  10.028  29.680  25.456  -4.165   1.568  -0.113  OD2   PPD  21  
PPD  C     C     C  0  1  N  N  N  10.201  27.142  24.063  -1.632  -0.551  -3.784  C     PPD  22  
PPD  O     O     O  0  1  N  N  N  10.033  26.455  25.096  -2.202  -1.457  -4.344  O     PPD  23  
PPD  OXT   OXT   O  0  1  N  N  N  11.307  27.229  23.444  -0.839   0.276  -4.482  OXT   PPD  24  
PPD  H2A1  1H2A  H  0  0  N  N  N   5.515  23.902  26.657   5.643  -0.165  -1.885  H2A1  PPD  25  
PPD  H2A2  2H2A  H  0  0  N  N  N   4.618  24.673  28.035   4.688   0.998  -2.834  H2A2  PPD  26  
PPD  H2A3  3H2A  H  0  0  N  N  N   3.711  24.106  26.687   5.584   1.545  -1.397  H2A3  PPD  27  
PPD  HO3   HO3   H  0  1  N  N  N   7.325  25.968  24.553   2.282   0.523  -3.305  HO3   PPD  28  
PPD  H4A1  1H4A  H  0  0  N  N  N   6.296  28.175  22.990   0.511  -1.477  -2.212  H4A1  PPD  29  
PPD  H4A2  2H4A  H  0  0  N  N  N   6.588  29.435  24.062  -0.234  -1.481  -0.596  H4A2  PPD  30  
PPD  H6    H6    H  0  1  N  N  N   2.699  28.699  26.515   2.923   0.628   2.174  H6    PPD  31  
PPD  H5A1  1H5A  H  0  0  N  N  N   3.788  30.660  25.531  -0.366   0.267   1.210  H5A1  PPD  32  
PPD  H5A2  2H5A  H  0  0  N  N  N   5.405  30.564  25.038   0.219  -1.391   1.477  H5A2  PPD  33  
PPD  HOP2  2HOP  H  0  0  N  N  N   5.075  32.513  21.536  -0.905  -0.134   5.828  HOP2  PPD  34  
PPD  HOP3  3HOP  H  0  0  N  N  N   3.500  33.414  23.168  -1.419   1.515   3.360  HOP3  PPD  35  
PPD  HN    HN    H  0  1  N  N  N   7.742  26.743  24.596  -0.867   0.717  -0.888  HN    PPD  36  
PPD  HA    HA    H  0  1  N  N  N   8.760  27.367  22.519  -1.999  -1.313  -1.825  HA    PPD  37  
PPD  HB1   1HB   H  0  1  N  N  N  10.229  29.316  22.443  -2.810   1.543  -2.529  HB1   PPD  38  
PPD  HB2   2HB   H  0  1  N  N  N   8.571  29.721  22.519  -3.902   0.139  -2.471  HB2   PPD  39  
PPD  HOD   HOD   H  0  1  N  N  N  10.198  30.237  26.206  -4.280   1.697   0.837  HOD   PPD  40  
PPD  HXT   HXT   H  0  1  N  N  N  12.054  26.774  23.814  -0.724   0.147  -5.434  HXT   PPD  41  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
PPD  N1   C2    DOUB  Y  N   1  
PPD  N1   C6    SING  Y  N   2  
PPD  C2   C2A   SING  N  N   3  
PPD  C2   C3    SING  Y  N   4  
PPD  C2A  H2A1  SING  N  N   5  
PPD  C2A  H2A2  SING  N  N   6  
PPD  C2A  H2A3  SING  N  N   7  
PPD  C3   O3    SING  N  N   8  
PPD  C3   C4    DOUB  Y  N   9  
PPD  O3   HO3   SING  N  N  10  
PPD  C4   C4A   SING  N  N  11  
PPD  C4   C5    SING  Y  N  12  
PPD  C4A  N     SING  N  N  13  
PPD  C4A  H4A1  SING  N  N  14  
PPD  C4A  H4A2  SING  N  N  15  
PPD  C5   C6    DOUB  Y  N  16  
PPD  C5   C5A   SING  N  N  17  
PPD  C6   H6    SING  N  N  18  
PPD  C5A  O4P   SING  N  N  19  
PPD  C5A  H5A1  SING  N  N  20  
PPD  C5A  H5A2  SING  N  N  21  
PPD  O4P  P     SING  N  N  22  
PPD  P    O1P   DOUB  N  N  23  
PPD  P    O2P   SING  N  N  24  
PPD  P    O3P   SING  N  N  25  
PPD  O2P  HOP2  SING  N  N  26  
PPD  O3P  HOP3  SING  N  N  27  
PPD  N    CA    SING  N  N  28  
PPD  N    HN    SING  N  N  29  
PPD  CA   CB    SING  N  N  30  
PPD  CA   C     SING  N  N  31  
PPD  CA   HA    SING  N  N  32  
PPD  CB   CG    SING  N  N  33  
PPD  CB   HB1   SING  N  N  34  
PPD  CB   HB2   SING  N  N  35  
PPD  CG   OD1   DOUB  N  N  36  
PPD  CG   OD2   SING  N  N  37  
PPD  OD2  HOD   SING  N  N  38  
PPD  C    O     DOUB  N  N  39  
PPD  C    OXT   SING  N  N  40  
PPD  OXT  HXT   SING  N  N  41  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
PPD  SMILES            ACDLabs               10.04  "O=C(O)CC(C(=O)O)NCc1c(cnc(c1O)C)COP(=O)(O)O"  
PPD  SMILES_CANONICAL  CACTVS                3.341  "Cc1ncc(CO[P](O)(O)=O)c(CN[C@@H](CC(O)=O)C(O)=O)c1O"  
PPD  SMILES            CACTVS                3.341  "Cc1ncc(CO[P](O)(O)=O)c(CN[CH](CC(O)=O)C(O)=O)c1O"  
PPD  SMILES_CANONICAL  "OpenEye OEToolkits"  1.5.0  "Cc1c(c(c(cn1)COP(=O)(O)O)CN[C@@H](CC(=O)O)C(=O)O)O"  
PPD  SMILES            "OpenEye OEToolkits"  1.5.0  "Cc1c(c(c(cn1)COP(=O)(O)O)CNC(CC(=O)O)C(=O)O)O"  
PPD  InChI             InChI                 1.03   "InChI=1S/C12H17N2O9P/c1-6-11(17)8(4-14-9(12(18)19)2-10(15)16)7(3-13-6)5-23-24(20,21)22/h3,9,14,17H,2,4-5H2,1H3,(H,15,16)(H,18,19)(H2,20,21,22)/t9-/m0/s1"  
PPD  InChIKey          InChI                 1.03   UKHLSCZNRCHWTM-VIFPVBQESA-N  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
PPD  "SYSTEMATIC NAME"  ACDLabs               10.04  "N-({3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4-yl}methyl)-L-aspartic acid"  
PPD  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.5.0  "(2S)-2-[[3-hydroxy-2-methyl-5-(phosphonooxymethyl)pyridin-4-yl]methylamino]butanedioic acid"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
PPD  "Create component"   1999-07-08  RCSB  
PPD  "Modify descriptor"  2011-06-04  RCSB  
PPD  "Modify synonyms"    2020-06-05  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     PPD
_pdbx_chem_comp_synonyms.name        "PYRIDOXYL-ASPARTIC ACID-5-MONOPHOSPHATE"
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
