data_RGD
#

_chem_comp.id                                   RGD
_chem_comp.name                                 "cyclobutyl[(2S,3aS,6aS)-6a-(2-hydroxyethyl)-2-(hydroxymethyl)hexahydro-5H-furo[2,3-c]pyrrol-5-yl]methanone"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C14 H23 N O4"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2020-02-12
_chem_comp.pdbx_modified_date                   2020-04-03
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       269.337
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    RGD
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       5QXL
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
RGD  C10  C1   C  0  1  N  N  S  29.556  44.913  -12.737  -0.938   1.750  -0.301  C10  RGD   1  
RGD  C17  C2   C  0  1  N  N  N  25.914  43.924   -8.853   3.986  -1.208  -0.594  C17  RGD   2  
RGD  C02  C3   C  0  1  N  N  N  29.366  48.366  -10.146  -3.468  -1.607   0.790  C02  RGD   3  
RGD  C03  C4   C  0  1  N  N  N  28.738  48.086  -11.518  -2.800  -1.354  -0.563  C03  RGD   4  
RGD  C04  C5   C  0  1  N  N  S  28.225  46.615  -11.662  -1.561  -0.478  -0.366  C04  RGD   5  
RGD  C05  C6   C  0  1  N  N  N  27.089  46.404  -10.940  -0.518  -1.167   0.538  C05  RGD   6  
RGD  C07  C7   C  0  1  N  N  N  26.629  45.373  -13.084   0.587  -0.775  -1.506  C07  RGD   7  
RGD  C08  C8   C  0  1  N  N  S  27.834  46.330  -13.155  -0.833  -0.205  -1.708  C08  RGD   8  
RGD  C09  C9   C  0  1  N  N  N  29.059  45.664  -13.758  -0.755   1.338  -1.784  C09  RGD   9  
RGD  C11  C10  C  0  1  N  N  N  31.049  44.719  -12.847  -1.484   3.176  -0.198  C11  RGD  10  
RGD  C14  C11  C  0  1  N  N  N  25.171  44.421  -11.252   1.911  -0.426   0.660  C14  RGD  11  
RGD  C16  C12  C  0  1  N  N  N  24.823  44.509   -9.748   3.152  -0.018  -0.090  C16  RGD  12  
RGD  C18  C13  C  0  1  N  N  N  24.796  43.211   -8.081   5.234  -0.403  -0.193  C18  RGD  13  
RGD  C19  C14  C  0  1  N  N  N  23.872  43.416   -9.272   4.340   0.324   0.826  C19  RGD  14  
RGD  N06  N1   N  0  1  N  N  N  26.228  45.324  -11.761   0.792  -0.755  -0.016  N06  RGD  15  
RGD  O01  O1   O  0  1  N  N  N  28.371  48.324   -9.154  -4.624  -2.425   0.605  O01  RGD  16  
RGD  O12  O2   O  0  1  N  N  N  31.490  43.742  -11.905  -1.629   3.532   1.178  O12  RGD  17  
RGD  O13  O3   O  0  1  N  N  N  29.160  45.720  -11.388  -1.903   0.799   0.196  O13  RGD  18  
RGD  O15  O4   O  0  1  N  N  N  24.612  43.659  -12.004   1.918  -0.459   1.873  O15  RGD  19  
RGD  H1   H1   H  0  1  N  N  N  29.068  43.928  -12.693   0.004   1.661   0.241  H1   RGD  20  
RGD  H2   H2   H  0  1  N  N  N  26.619  43.253   -9.366   3.847  -2.118  -0.010  H2   RGD  21  
RGD  H3   H3   H  0  1  N  N  N  26.475  44.667   -8.267   3.902  -1.378  -1.667  H3   RGD  22  
RGD  H4   H4   H  0  1  N  N  N  30.130  47.604   -9.931  -2.766  -2.114   1.452  H4   RGD  23  
RGD  H5   H5   H  0  1  N  N  N  29.833  49.362  -10.154  -3.763  -0.656   1.233  H5   RGD  24  
RGD  H6   H6   H  0  1  N  N  N  29.494  48.272  -12.295  -2.505  -2.306  -1.007  H6   RGD  25  
RGD  H7   H7   H  0  1  N  N  N  27.889  48.770  -11.662  -3.502  -0.847  -1.226  H7   RGD  26  
RGD  H8   H8   H  0  1  N  N  N  26.524  47.342  -10.836  -0.620  -0.821   1.567  H8   RGD  27  
RGD  H9   H9   H  0  1  N  N  N  27.339  46.014   -9.942  -0.629  -2.250   0.489  H9   RGD  28  
RGD  H10  H10  H  0  1  N  N  N  25.809  45.750  -13.713   0.647  -1.795  -1.884  H10  RGD  29  
RGD  H11  H11  H  0  1  N  N  N  26.923  44.370  -13.427   1.327  -0.144  -2.000  H11  RGD  30  
RGD  H12  H12  H  0  1  N  N  N  27.577  47.262  -13.680  -1.344  -0.641  -2.566  H12  RGD  31  
RGD  H13  H13  H  0  1  N  N  N  28.780  45.029  -14.612  -1.561   1.737  -2.399  H13  RGD  32  
RGD  H14  H14  H  0  1  N  N  N  29.793  46.416  -14.085   0.217   1.660  -2.159  H14  RGD  33  
RGD  H15  H15  H  0  1  N  N  N  31.298  44.381  -13.864  -0.792   3.866  -0.681  H15  RGD  34  
RGD  H16  H16  H  0  1  N  N  N  31.555  45.674  -12.644  -2.454   3.230  -0.691  H16  RGD  35  
RGD  H17  H17  H  0  1  N  N  N  24.509  45.518   -9.442   2.958   0.735  -0.853  H17  RGD  36  
RGD  H18  H18  H  0  1  N  N  N  24.476  43.731   -7.166   6.015  -1.008   0.266  H18  RGD  37  
RGD  H19  H19  H  0  1  N  N  N  25.008  42.157   -7.849   5.609   0.244  -0.986  H19  RGD  38  
RGD  H20  H20  H  0  1  N  N  N  22.863  43.769   -9.013   4.541   1.393   0.898  H20  RGD  39  
RGD  H21  H21  H  0  1  N  N  N  23.796  42.550   -9.946   4.298  -0.166   1.798  H21  RGD  40  
RGD  H22  H22  H  0  1  N  N  N  28.762  48.498   -8.306  -5.099  -2.626   1.423  H22  RGD  41  
RGD  H23  H23  H  0  1  N  N  N  32.430  43.628  -11.983  -1.972   4.425   1.320  H23  RGD  42  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
RGD  C09  C08  SING  N  N   1  
RGD  C09  C10  SING  N  N   2  
RGD  C08  C07  SING  N  N   3  
RGD  C08  C04  SING  N  N   4  
RGD  C07  N06  SING  N  N   5  
RGD  C11  C10  SING  N  N   6  
RGD  C11  O12  SING  N  N   7  
RGD  C10  O13  SING  N  N   8  
RGD  O15  C14  DOUB  N  N   9  
RGD  N06  C14  SING  N  N  10  
RGD  N06  C05  SING  N  N  11  
RGD  C04  C03  SING  N  N  12  
RGD  C04  O13  SING  N  N  13  
RGD  C04  C05  SING  N  N  14  
RGD  C03  C02  SING  N  N  15  
RGD  C14  C16  SING  N  N  16  
RGD  C02  O01  SING  N  N  17  
RGD  C16  C19  SING  N  N  18  
RGD  C16  C17  SING  N  N  19  
RGD  C19  C18  SING  N  N  20  
RGD  C17  C18  SING  N  N  21  
RGD  C10  H1   SING  N  N  22  
RGD  C17  H2   SING  N  N  23  
RGD  C17  H3   SING  N  N  24  
RGD  C02  H4   SING  N  N  25  
RGD  C02  H5   SING  N  N  26  
RGD  C03  H6   SING  N  N  27  
RGD  C03  H7   SING  N  N  28  
RGD  C05  H8   SING  N  N  29  
RGD  C05  H9   SING  N  N  30  
RGD  C07  H10  SING  N  N  31  
RGD  C07  H11  SING  N  N  32  
RGD  C08  H12  SING  N  N  33  
RGD  C09  H13  SING  N  N  34  
RGD  C09  H14  SING  N  N  35  
RGD  C11  H15  SING  N  N  36  
RGD  C11  H16  SING  N  N  37  
RGD  C16  H17  SING  N  N  38  
RGD  C18  H18  SING  N  N  39  
RGD  C18  H19  SING  N  N  40  
RGD  C19  H20  SING  N  N  41  
RGD  C19  H21  SING  N  N  42  
RGD  O01  H22  SING  N  N  43  
RGD  O12  H23  SING  N  N  44  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
RGD  SMILES            ACDLabs               12.01  "C2(OC1(CCO)CN(CC1C2)C(C3CCC3)=O)CO"  
RGD  InChI             InChI                 1.03   "InChI=1S/C14H23NO4/c16-5-4-14-9-15(13(18)10-2-1-3-10)7-11(14)6-12(8-17)19-14/h10-12,16-17H,1-9H2/t11-,12-,14+/m0/s1"  
RGD  InChIKey          InChI                 1.03   LOAFEZNLOIOHIT-SGMGOOAPSA-N  
RGD  SMILES_CANONICAL  CACTVS                3.385  "OCC[C@@]12CN(C[C@@H]1C[C@@H](CO)O2)C(=O)C3CCC3"  
RGD  SMILES            CACTVS                3.385  "OCC[C]12CN(C[CH]1C[CH](CO)O2)C(=O)C3CCC3"  
RGD  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.6  "C1CC(C1)C(=O)N2C[C@@H]3C[C@H](O[C@@]3(C2)CCO)CO"  
RGD  SMILES            "OpenEye OEToolkits"  2.0.6  "C1CC(C1)C(=O)N2CC3CC(OC3(C2)CCO)CO"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
RGD  "SYSTEMATIC NAME"  ACDLabs               12.01  "cyclobutyl[(2S,3aS,6aS)-6a-(2-hydroxyethyl)-2-(hydroxymethyl)hexahydro-5H-furo[2,3-c]pyrrol-5-yl]methanone"  
RGD  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.6  "[(2~{S},3~{a}~{S},6~{a}~{S})-6~{a}-(2-hydroxyethyl)-2-(hydroxymethyl)-3,3~{a},4,6-tetrahydro-2~{H}-furo[2,3-c]pyrrol-5-yl]-cyclobutyl-methanone"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
RGD  "Create component"  2020-02-12  RCSB  
RGD  "Initial release"   2020-04-08  RCSB  
##
