data_RJD
#

_chem_comp.id                                   RJD
_chem_comp.name                                 "(3S,6S)-N~3~-cyclopropyl-N~1~-(cyclopropylmethyl)-3,6-dimethylpiperazine-1,3-dicarboxamide"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C15 H26 N4 O2"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2020-02-12
_chem_comp.pdbx_modified_date                   2020-04-03
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       294.393
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    RJD
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       5QXU
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
RJD  C10  C1   C  0  1  N  N  N  29.693  48.445  -11.057  -4.651   1.426  -0.304  C10  RJD   1  
RJD  C13  C2   C  0  1  N  N  N  25.556  46.979  -11.527  -0.094  -0.226  -0.837  C13  RJD   2  
RJD  C15  C3   C  0  1  N  N  N  25.537  48.418   -9.421   2.178  -1.005  -0.339  C15  RJD   3  
RJD  C20  C4   C  0  1  N  N  N  24.147  49.639   -5.219   5.658   2.617  -0.086  C20  RJD   4  
RJD  C21  C5   C  0  1  N  N  N  24.999  50.896   -5.072   4.645   2.851   1.037  C21  RJD   5  
RJD  C01  C6   C  0  1  N  N  N  23.548  45.465   -9.747   1.472  -3.544   0.244  C01  RJD   6  
RJD  C02  C7   C  0  1  N  N  S  24.972  45.910   -9.400   0.364  -2.656  -0.325  C02  RJD   7  
RJD  C03  C8   C  0  1  N  N  N  25.981  44.756   -9.722  -0.820  -2.622   0.647  C03  RJD   8  
RJD  C05  C9   C  0  1  N  N  S  26.656  45.955  -11.477  -1.260  -0.288   0.155  C05  RJD   9  
RJD  C06  C10  C  0  1  N  N  N  26.712  45.755  -13.053  -0.759   0.077   1.554  C06  RJD  10  
RJD  C07  C11  C  0  1  N  N  N  28.124  46.411  -11.371  -2.330   0.685  -0.266  C07  RJD  11  
RJD  C11  C12  C  0  1  N  N  N  30.201  48.463   -9.624  -5.681   1.843   0.749  C11  RJD  12  
RJD  C12  C13  C  0  1  N  N  N  29.661  49.742  -10.264  -6.087   0.904  -0.389  C12  RJD  13  
RJD  C18  C14  C  0  1  N  N  N  25.497  49.867   -7.336   4.008   0.587  -0.107  C18  RJD  14  
RJD  C19  C15  C  0  1  N  N  N  25.534  49.697   -5.846   4.226   2.096  -0.226  C19  RJD  15  
RJD  N04  N1   N  0  1  N  N  N  26.292  44.655  -11.137  -1.812  -1.649   0.172  N04  RJD  16  
RJD  N09  N2   N  0  1  N  N  N  28.364  47.870  -11.199  -3.610   0.481   0.105  N09  RJD  17  
RJD  N14  N3   N  0  1  N  N  N  25.336  47.162  -10.084   0.869  -1.285  -0.494  N14  RJD  18  
RJD  N17  N4   N  0  1  N  N  N  25.297  48.551   -7.978   2.605   0.273  -0.386  N17  RJD  19  
RJD  O08  O1   O  0  1  N  N  N  29.001  45.632  -11.375  -2.041   1.652  -0.938  O08  RJD  20  
RJD  O16  O2   O  0  1  N  N  N  25.879  49.331  -10.078   2.974  -1.906  -0.157  O16  RJD  21  
RJD  H1   H1   H  0  1  N  N  N  30.424  48.346  -11.873  -4.345   2.177  -1.032  H1   RJD  22  
RJD  H2   H2   H  0  1  N  N  N  25.882  47.910  -12.014  -0.466  -0.384  -1.849  H2   RJD  23  
RJD  H3   H3   H  0  1  N  N  N  24.659  46.594  -12.034   0.393   0.747  -0.770  H3   RJD  24  
RJD  H4   H4   H  0  1  N  N  N  23.253  49.652   -5.860   5.943   3.475  -0.693  H4   RJD  25  
RJD  H5   H5   H  0  1  N  N  N  23.964  48.994   -4.347   6.445   1.884   0.092  H5   RJD  26  
RJD  H6   H6   H  0  1  N  N  N  25.431  51.157   -4.094   4.766   2.272   1.953  H6   RJD  27  
RJD  H7   H7   H  0  1  N  N  N  24.719  51.816   -5.607   4.265   3.864   1.168  H7   RJD  28  
RJD  H8   H8   H  0  1  N  N  N  23.316  44.529   -9.217   1.056  -4.515   0.516  H8   RJD  29  
RJD  H9   H9   H  0  1  N  N  N  22.835  46.245   -9.441   2.250  -3.680  -0.507  H9   RJD  30  
RJD  H10  H10  H  0  1  N  N  N  23.469  45.301  -10.832   1.898  -3.072   1.129  H10  RJD  31  
RJD  H11  H11  H  0  1  N  N  N  25.012  46.084   -8.315   0.037  -3.050  -1.287  H11  RJD  32  
RJD  H12  H12  H  0  1  N  N  N  25.542  43.803   -9.390  -1.276  -3.611   0.699  H12  RJD  33  
RJD  H13  H13  H  0  1  N  N  N  26.914  44.942   -9.170  -0.469  -2.330   1.637  H13  RJD  34  
RJD  H14  H14  H  0  1  N  N  N  27.483  45.011  -13.302  -0.347   1.086   1.541  H14  RJD  35  
RJD  H15  H15  H  0  1  N  N  N  25.734  45.404  -13.413  -1.589   0.032   2.260  H15  RJD  36  
RJD  H16  H16  H  0  1  N  N  N  26.958  46.712  -13.535   0.015  -0.628   1.859  H16  RJD  37  
RJD  H17  H17  H  0  1  N  N  N  29.628  47.960   -8.831  -5.583   1.413   1.746  H17  RJD  38  
RJD  H18  H18  H  0  1  N  N  N  31.277  48.361   -9.420  -6.051   2.867   0.713  H18  RJD  39  
RJD  H19  H19  H  0  1  N  N  N  30.348  50.562  -10.521  -6.725   1.310  -1.174  H19  RJD  40  
RJD  H20  H20  H  0  1  N  N  N  28.700  50.160   -9.932  -6.256  -0.144  -0.141  H20  RJD  41  
RJD  H21  H21  H  0  1  N  N  N  26.448  50.301   -7.679   4.646   0.070  -0.824  H21  RJD  42  
RJD  H22  H22  H  0  1  N  N  N  24.668  50.537   -7.608   4.260   0.262   0.903  H22  RJD  43  
RJD  H23  H23  H  0  1  N  N  N  26.340  49.098   -5.397   3.569   2.612  -0.926  H23  RJD  44  
RJD  H24  H24  H  0  1  N  N  N  25.493  44.358  -11.659  -2.654  -1.691   0.726  H24  RJD  45  
RJD  H26  H26  H  0  1  N  N  N  27.575  48.484  -11.180  -3.842  -0.293   0.643  H26  RJD  46  
RJD  H27  H27  H  0  1  N  N  N  25.003  47.763   -7.438   1.982   0.984  -0.604  H27  RJD  47  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
RJD  C06  C05  SING  N  N   1  
RJD  C13  C05  SING  N  N   2  
RJD  C13  N14  SING  N  N   3  
RJD  C05  C07  SING  N  N   4  
RJD  C05  N04  SING  N  N   5  
RJD  O08  C07  DOUB  N  N   6  
RJD  C07  N09  SING  N  N   7  
RJD  N09  C10  SING  N  N   8  
RJD  N04  C03  SING  N  N   9  
RJD  C10  C12  SING  N  N  10  
RJD  C10  C11  SING  N  N  11  
RJD  C12  C11  SING  N  N  12  
RJD  N14  C15  SING  N  N  13  
RJD  N14  C02  SING  N  N  14  
RJD  O16  C15  DOUB  N  N  15  
RJD  C01  C02  SING  N  N  16  
RJD  C03  C02  SING  N  N  17  
RJD  C15  N17  SING  N  N  18  
RJD  N17  C18  SING  N  N  19  
RJD  C18  C19  SING  N  N  20  
RJD  C19  C20  SING  N  N  21  
RJD  C19  C21  SING  N  N  22  
RJD  C20  C21  SING  N  N  23  
RJD  C10  H1   SING  N  N  24  
RJD  C13  H2   SING  N  N  25  
RJD  C13  H3   SING  N  N  26  
RJD  C20  H4   SING  N  N  27  
RJD  C20  H5   SING  N  N  28  
RJD  C21  H6   SING  N  N  29  
RJD  C21  H7   SING  N  N  30  
RJD  C01  H8   SING  N  N  31  
RJD  C01  H9   SING  N  N  32  
RJD  C01  H10  SING  N  N  33  
RJD  C02  H11  SING  N  N  34  
RJD  C03  H12  SING  N  N  35  
RJD  C03  H13  SING  N  N  36  
RJD  C06  H14  SING  N  N  37  
RJD  C06  H15  SING  N  N  38  
RJD  C06  H16  SING  N  N  39  
RJD  C11  H17  SING  N  N  40  
RJD  C11  H18  SING  N  N  41  
RJD  C12  H19  SING  N  N  42  
RJD  C12  H20  SING  N  N  43  
RJD  C18  H21  SING  N  N  44  
RJD  C18  H22  SING  N  N  45  
RJD  C19  H23  SING  N  N  46  
RJD  N04  H24  SING  N  N  47  
RJD  N09  H26  SING  N  N  48  
RJD  N17  H27  SING  N  N  49  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
RJD  SMILES            ACDLabs               12.01  "C1(CC1)NC(C3(CN(C(NCC2CC2)=O)C(C)CN3)C)=O"  
RJD  InChI             InChI                 1.03   "InChI=1S/C15H26N4O2/c1-10-7-17-15(2,13(20)18-12-5-6-12)9-19(10)14(21)16-8-11-3-4-11/h10-12,17H,3-9H2,1-2H3,(H,16,21)(H,18,20)/t10-,15-/m0/s1"  
RJD  InChIKey          InChI                 1.03   SXNUQDJHCXDWNX-BONVTDFDSA-N  
RJD  SMILES_CANONICAL  CACTVS                3.385  "C[C@H]1CN[C@@](C)(CN1C(=O)NCC2CC2)C(=O)NC3CC3"  
RJD  SMILES            CACTVS                3.385  "C[CH]1CN[C](C)(CN1C(=O)NCC2CC2)C(=O)NC3CC3"  
RJD  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.6  "C[C@H]1CN[C@](CN1C(=O)NCC2CC2)(C)C(=O)NC3CC3"  
RJD  SMILES            "OpenEye OEToolkits"  2.0.6  "CC1CNC(CN1C(=O)NCC2CC2)(C)C(=O)NC3CC3"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
RJD  "SYSTEMATIC NAME"  ACDLabs               12.01  "(3S,6S)-N~3~-cyclopropyl-N~1~-(cyclopropylmethyl)-3,6-dimethylpiperazine-1,3-dicarboxamide"  
RJD  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.6  "(3~{S},6~{S})-~{N}3-cyclopropyl-~{N}1-(cyclopropylmethyl)-3,6-dimethyl-piperazine-1,3-dicarboxamide"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
RJD  "Create component"  2020-02-12  RCSB  
RJD  "Initial release"   2020-04-08  RCSB  
##
