data_VCD
#

_chem_comp.id                                   VCD
_chem_comp.name                                 "4-{4-[(3R)-3-methylmorpholin-4-yl]-6-[1-(methylsulfonyl)cyclopropyl]pyrimidin-2-yl}-1H-indole"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C21 H24 N4 O3 S"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2020-07-27
_chem_comp.pdbx_modified_date                   2021-07-23
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       412.505
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    VCD
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       7JJG
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
VCD  C11   C1   C  0  1  N  N  N  15.352  19.094  64.352  -2.779  -4.448   0.414  C11   VCD   1  
VCD  C01   C2   C  0  1  Y  N  N  19.099  17.359  65.766   0.600  -1.870  -0.269  C01   VCD   2  
VCD  C02   C3   C  0  1  Y  N  N  20.327  16.881  66.223   1.579  -0.903  -0.141  C02   VCD   3  
VCD  C04   C4   C  0  1  Y  N  N  21.027  19.130  66.639  -0.052   0.727  -0.103  C04   VCD   4  
VCD  C06   C5   C  0  1  Y  N  N  18.850  18.750  65.739  -0.736  -1.465  -0.317  C06   VCD   5  
VCD  C08   C6   C  0  1  N  N  R  17.315  20.680  65.781  -3.068  -1.750  -0.465  C08   VCD   6  
VCD  C09   C7   C  0  1  N  N  N  16.211  21.270  64.864  -4.152  -2.811  -0.668  C09   VCD   7  
VCD  C12   C8   C  0  1  N  N  N  16.533  18.414  65.086  -1.681  -3.403   0.627  C12   VCD   8  
VCD  C13   C9   C  0  1  N  N  N  16.869  20.707  67.274  -3.302  -1.028   0.864  C13   VCD   9  
VCD  C14   C10  C  0  1  Y  N  N  21.993  20.032  67.140  -0.404   2.162  -0.010  C14   VCD  10  
VCD  C15   C11  C  0  1  Y  N  N  22.866  19.580  68.165   0.592   3.122   0.119  C15   VCD  11  
VCD  C16   C12  C  0  1  Y  N  N  23.828  20.436  68.731   0.261   4.463   0.206  C16   VCD  12  
VCD  C17   C13  C  0  1  Y  N  N  23.952  21.768  68.309  -1.057   4.870   0.165  C17   VCD  13  
VCD  C18   C14  C  0  1  Y  N  N  23.082  22.231  67.315  -2.075   3.932   0.036  C18   VCD  14  
VCD  C19   C15  C  0  1  Y  N  N  22.118  21.390  66.739  -1.751   2.567  -0.058  C19   VCD  15  
VCD  C20   C16  C  0  1  Y  N  N  21.448  22.174  65.795  -3.021   1.856  -0.190  C20   VCD  16  
VCD  C21   C17  C  0  1  Y  N  N  22.024  23.445  65.844  -3.994   2.783  -0.175  C21   VCD  17  
VCD  C23   C18  C  0  1  N  N  N  20.621  15.445  66.248   3.034  -1.293  -0.093  C23   VCD  18  
VCD  C25   C19  C  0  1  N  N  N  23.416  15.610  66.944   3.850   0.841   1.556  C25   VCD  19  
VCD  C28   C20  C  0  1  N  N  N  19.520  14.397  66.051   3.400  -2.559   0.684  C28   VCD  20  
VCD  C29   C21  C  0  1  N  N  N  20.566  14.631  64.955   3.451  -2.558  -0.845  C29   VCD  21  
VCD  N03   N1   N  0  1  Y  N  N  21.235  17.787  66.655   1.225   0.370  -0.061  N03   VCD  22  
VCD  N05   N2   N  0  1  Y  N  N  19.820  19.576  66.209  -1.020  -0.170  -0.237  N05   VCD  23  
VCD  N07   N3   N  0  1  N  N  N  17.651  19.320  65.327  -1.750  -2.401  -0.445  N07   VCD  24  
VCD  N22   N4   N  0  1  Y  N  N  23.010  23.450  66.757  -3.448   4.028  -0.032  N22   VCD  25  
VCD  O10   O1   O  0  1  N  N  N  15.076  20.401  64.870  -4.050  -3.794   0.366  O10   VCD  26  
VCD  O26   O2   O  0  1  N  N  N  21.466  15.653  68.840   5.530  -0.448  -0.016  O26   VCD  27  
VCD  O27   O3   O  0  1  N  N  N  21.840  13.383  67.510   3.866   1.008  -1.075  O27   VCD  28  
VCD  S24   S1   S  0  1  N  N  N  21.826  14.944  67.506   4.213   0.084  -0.052  S24   VCD  29  
VCD  H111  H1   H  0  0  N  N  N  14.454  18.469  64.469  -2.604  -4.973  -0.525  H111  VCD  30  
VCD  H112  H2   H  0  0  N  N  N  15.601  19.181  63.284  -2.768  -5.162   1.238  H112  VCD  31  
VCD  H011  H3   H  0  0  N  N  N  18.339  16.667  65.433   0.863  -2.916  -0.336  H011  VCD  32  
VCD  H081  H4   H  0  0  N  N  N  18.207  21.316  65.686  -3.106  -1.029  -1.282  H081  VCD  33  
VCD  H091  H5   H  0  0  N  N  N  16.597  21.363  63.838  -5.135  -2.340  -0.627  H091  VCD  34  
VCD  H092  H6   H  0  0  N  N  N  15.916  22.262  65.236  -4.018  -3.288  -1.639  H092  VCD  35  
VCD  H121  H7   H  0  0  N  N  N  16.173  18.036  66.054  -1.825  -2.916   1.592  H121  VCD  36  
VCD  H122  H8   H  0  0  N  N  N  16.889  17.573  64.473  -0.706  -3.891   0.608  H122  VCD  37  
VCD  H133  H9   H  0  0  N  N  N  17.666  20.285  67.903  -3.263  -1.749   1.680  H133  VCD  38  
VCD  H131  H10  H  0  0  N  N  N  16.673  21.745  67.579  -2.528  -0.273   1.008  H131  VCD  39  
VCD  H132  H11  H  0  0  N  N  N  15.953  20.110  67.394  -4.280  -0.547   0.849  H132  VCD  40  
VCD  H151  H12  H  0  0  N  N  N  22.790  18.561  68.516   1.629   2.821   0.152  H151  VCD  41  
VCD  H161  H13  H  0  0  N  N  N  24.483  20.061  69.504   1.043   5.201   0.306  H161  VCD  42  
VCD  H171  H14  H  0  0  N  N  N  24.699  22.419  68.739  -1.298   5.920   0.234  H171  VCD  43  
VCD  H201  H15  H  0  0  N  N  N  20.640  21.857  65.152  -3.153   0.789  -0.290  H201  VCD  44  
VCD  H211  H16  H  0  0  N  N  N  21.724  24.291  65.243  -5.051   2.575  -0.254  H211  VCD  45  
VCD  H252  H17  H  0  0  N  N  N  24.202  15.342  67.666   4.102   0.140   2.352  H252  VCD  46  
VCD  H253  H18  H  0  0  N  N  N  23.663  15.187  65.959   4.441   1.750   1.672  H253  VCD  47  
VCD  H251  H19  H  0  0  N  N  N  23.348  16.705  66.866   2.790   1.087   1.611  H251  VCD  48  
VCD  H281  H20  H  0  0  N  N  N  18.479  14.715  65.895   4.350  -2.565   1.220  H281  VCD  49  
VCD  H282  H21  H  0  0  N  N  N  19.535  13.466  66.637   2.589  -3.110   1.161  H282  VCD  50  
VCD  H291  H22  H  0  0  N  N  N  21.331  13.867  64.753   2.673  -3.108  -1.375  H291  VCD  51  
VCD  H292  H23  H  0  0  N  N  N  20.275  15.116  64.012   4.434  -2.563  -1.316  H292  VCD  52  
VCD  H221  H24  H  0  0  N  N  N  23.592  24.231  66.983  -3.951   4.857   0.006  H221  VCD  53  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
VCD  C11  O10   SING  N  N   1  
VCD  C11  C12   SING  N  N   2  
VCD  C09  O10   SING  N  N   3  
VCD  C09  C08   SING  N  N   4  
VCD  C29  C28   SING  N  N   5  
VCD  C29  C23   SING  N  N   6  
VCD  C12  N07   SING  N  N   7  
VCD  N07  C06   SING  N  N   8  
VCD  N07  C08   SING  N  N   9  
VCD  C06  C01   DOUB  Y  N  10  
VCD  C06  N05   SING  Y  N  11  
VCD  C01  C02   SING  Y  N  12  
VCD  C08  C13   SING  N  N  13  
VCD  C20  C21   DOUB  Y  N  14  
VCD  C20  C19   SING  Y  N  15  
VCD  C21  N22   SING  Y  N  16  
VCD  C28  C23   SING  N  N  17  
VCD  N05  C04   DOUB  Y  N  18  
VCD  C02  C23   SING  N  N  19  
VCD  C02  N03   DOUB  Y  N  20  
VCD  C23  S24   SING  N  N  21  
VCD  C04  N03   SING  Y  N  22  
VCD  C04  C14   SING  N  N  23  
VCD  C19  C14   DOUB  Y  N  24  
VCD  C19  C18   SING  Y  N  25  
VCD  N22  C18   SING  Y  N  26  
VCD  C25  S24   SING  N  N  27  
VCD  C14  C15   SING  Y  N  28  
VCD  C18  C17   DOUB  Y  N  29  
VCD  S24  O27   DOUB  N  N  30  
VCD  S24  O26   DOUB  N  N  31  
VCD  C15  C16   DOUB  Y  N  32  
VCD  C17  C16   SING  Y  N  33  
VCD  C11  H111  SING  N  N  34  
VCD  C11  H112  SING  N  N  35  
VCD  C01  H011  SING  N  N  36  
VCD  C08  H081  SING  N  N  37  
VCD  C09  H091  SING  N  N  38  
VCD  C09  H092  SING  N  N  39  
VCD  C12  H121  SING  N  N  40  
VCD  C12  H122  SING  N  N  41  
VCD  C13  H133  SING  N  N  42  
VCD  C13  H131  SING  N  N  43  
VCD  C13  H132  SING  N  N  44  
VCD  C15  H151  SING  N  N  45  
VCD  C16  H161  SING  N  N  46  
VCD  C17  H171  SING  N  N  47  
VCD  C20  H201  SING  N  N  48  
VCD  C21  H211  SING  N  N  49  
VCD  C25  H252  SING  N  N  50  
VCD  C25  H253  SING  N  N  51  
VCD  C25  H251  SING  N  N  52  
VCD  C28  H281  SING  N  N  53  
VCD  C28  H282  SING  N  N  54  
VCD  C29  H291  SING  N  N  55  
VCD  C29  H292  SING  N  N  56  
VCD  N22  H221  SING  N  N  57  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
VCD  SMILES            ACDLabs               12.01  "C5OCC(C)N(c4cc(C1(S(C)(=O)=O)CC1)nc(c2cccc3c2ccn3)n4)C5"  
VCD  InChI             InChI                 1.03   "InChI=1S/C21H24N4O3S/c1-14-13-28-11-10-25(14)19-12-18(21(7-8-21)29(2,26)27)23-20(24-19)16-4-3-5-17-15(16)6-9-22-17/h3-6,9,12,14,22H,7-8,10-11,13H2,1-2H3/t14-/m1/s1"  
VCD  InChIKey          InChI                 1.03   SCGCBAAYLFTIJU-CQSZACIVSA-N  
VCD  SMILES_CANONICAL  CACTVS                3.385  "C[C@@H]1COCCN1c2cc(nc(n2)c3cccc4[nH]ccc34)C5(CC5)[S](C)(=O)=O"  
VCD  SMILES            CACTVS                3.385  "C[CH]1COCCN1c2cc(nc(n2)c3cccc4[nH]ccc34)C5(CC5)[S](C)(=O)=O"  
VCD  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "C[C@@H]1COCCN1c2cc(nc(n2)c3cccc4c3cc[nH]4)C5(CC5)S(=O)(=O)C"  
VCD  SMILES            "OpenEye OEToolkits"  2.0.7  "CC1COCCN1c2cc(nc(n2)c3cccc4c3cc[nH]4)C5(CC5)S(=O)(=O)C"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
VCD  "SYSTEMATIC NAME"  ACDLabs               12.01  "4-{4-[(3R)-3-methylmorpholin-4-yl]-6-[1-(methylsulfonyl)cyclopropyl]pyrimidin-2-yl}-1H-indole"  
VCD  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.7  "(3~{R})-4-[2-(1~{H}-indol-4-yl)-6-(1-methylsulfonylcyclopropyl)pyrimidin-4-yl]-3-methyl-morpholine"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
VCD  "Create component"  2020-07-27  RCSB  
VCD  "Initial release"   2021-07-28  RCSB  
##
