data_VGD
# 
_chem_comp.id                                    VGD 
_chem_comp.name                                  6-chloro-1H-benzimidazol-2-amine 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C7 H6 Cl N3" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2009-03-23 
_chem_comp.pdbx_modified_date                    2011-06-04 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        167.596 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     VGD 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        2WD7 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  EBI 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
VGD CLA  CLA  CL 0 0 N N N -15.599 16.619 6.609 -3.432 -0.507 -0.001 CLA  VGD 1  
VGD CAH  CAH  C  0 1 Y N N -16.669 16.226 5.231 -1.775 0.012  -0.001 CAH  VGD 2  
VGD CAC  CAC  C  0 1 Y N N -16.745 17.128 4.173 -1.477 1.367  0.000  CAC  VGD 3  
VGD CAD  CAD  C  0 1 Y N N -17.562 16.874 3.074 -0.167 1.794  0.000  CAD  VGD 4  
VGD CAK  CAK  C  0 1 Y N N -18.307 15.700 3.044 0.868  0.857  -0.000 CAK  VGD 5  
VGD CAJ  CAJ  C  0 1 Y N N -18.235 14.780 4.112 0.561  -0.514 -0.001 CAJ  VGD 6  
VGD CAE  CAE  C  0 1 Y N N -17.416 15.042 5.210 -0.762 -0.927 0.004  CAE  VGD 7  
VGD NAG  NAG  N  0 1 Y N N -19.154 15.222 2.107 2.224  0.963  0.000  NAG  VGD 8  
VGD CAI  CAI  C  0 1 Y N N -19.577 14.058 2.631 2.758  -0.233 -0.000 CAI  VGD 9  
VGD NAF  NAF  N  0 1 Y N N -19.049 13.742 3.823 1.776  -1.181 -0.001 NAF  VGD 10 
VGD NAA  NAA  N  0 1 N N N -20.461 13.248 1.985 4.112  -0.495 -0.000 NAA  VGD 11 
VGD HAC  HAC  H  0 1 N N N -16.163 18.037 4.205 -2.277 2.092  0.001  HAC  VGD 12 
VGD HAD  HAD  H  0 1 N N N -17.616 17.578 2.257 0.058  2.850  0.001  HAD  VGD 13 
VGD HAE  HAE  H  0 1 N N N -17.359 14.343 6.031 -1.000 -1.980 0.007  HAE  VGD 14 
VGD HNAF HNAF H  0 0 N N N -19.219 12.924 4.372 1.904  -2.142 -0.002 HNAF VGD 15 
VGD HNAA HNAA H  0 0 N N N -21.234 13.049 2.588 4.748  0.238  0.001  HNAA VGD 16 
VGD HNAB HNAB H  0 0 N N N -20.791 13.706 1.160 4.429  -1.412 -0.001 HNAB VGD 17 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
VGD CLA CAH  SING N N 1  
VGD CAH CAC  DOUB Y N 2  
VGD CAH CAE  SING Y N 3  
VGD CAC CAD  SING Y N 4  
VGD CAD CAK  DOUB Y N 5  
VGD CAK CAJ  SING Y N 6  
VGD CAK NAG  SING Y N 7  
VGD CAJ CAE  DOUB Y N 8  
VGD CAJ NAF  SING Y N 9  
VGD NAG CAI  DOUB Y N 10 
VGD CAI NAF  SING Y N 11 
VGD CAI NAA  SING N N 12 
VGD CAC HAC  SING N N 13 
VGD CAD HAD  SING N N 14 
VGD CAE HAE  SING N N 15 
VGD NAF HNAF SING N N 16 
VGD NAA HNAA SING N N 17 
VGD NAA HNAB SING N N 18 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
VGD SMILES           ACDLabs              10.04 "Clc2cc1c(nc(n1)N)cc2"                                              
VGD SMILES_CANONICAL CACTVS               3.341 "Nc1[nH]c2cc(Cl)ccc2n1"                                             
VGD SMILES           CACTVS               3.341 "Nc1[nH]c2cc(Cl)ccc2n1"                                             
VGD SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "c1cc2c(cc1Cl)[nH]c(n2)N"                                           
VGD SMILES           "OpenEye OEToolkits" 1.5.0 "c1cc2c(cc1Cl)[nH]c(n2)N"                                           
VGD InChI            InChI                1.03  "InChI=1S/C7H6ClN3/c8-4-1-2-5-6(3-4)11-7(9)10-5/h1-3H,(H3,9,10,11)" 
VGD InChIKey         InChI                1.03  PDOCNPCPPLPXRV-UHFFFAOYSA-N                                         
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
VGD "SYSTEMATIC NAME" ACDLabs              10.04 6-chloro-1H-benzimidazol-2-amine 
VGD "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 6-chloro-1H-benzimidazol-2-amine 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
VGD "Create component"     2009-03-23 EBI  
VGD "Modify aromatic_flag" 2011-06-04 RCSB 
VGD "Modify descriptor"    2011-06-04 RCSB 
# 
