data_VRD
#

_chem_comp.id                                   VRD
_chem_comp.name                                 "({3-[amino(oxo)acetyl]-1-benzyl-2-ethyl-1H-indol-4-yl}oxy)acetic acid"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C21 H20 N2 O5"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        Varespladib
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2019-07-25
_chem_comp.pdbx_modified_date                   2021-03-08
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       380.394
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    VRD
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       6PWH
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
VRD  C01  C1   C  0  1  N  N  N   -5.640  -6.630  75.458   1.535   3.055  -2.338  C01  VRD   1  
VRD  C02  C2   C  0  1  N  N  N   -6.154  -6.209  74.081   1.745   2.468  -0.941  C02  VRD   2  
VRD  C03  C3   C  0  1  Y  N  N   -7.153  -5.036  74.166   1.076   1.120  -0.857  C03  VRD   3  
VRD  C04  C4   C  0  1  Y  N  N   -7.070  -3.984  75.052  -0.256   0.909  -0.551  C04  VRD   4  
VRD  C05  C5   C  0  1  Y  N  N   -8.164  -3.153  74.793  -0.457  -0.553  -0.585  C05  VRD   5  
VRD  C06  C6   C  0  1  Y  N  N   -8.850  -3.739  73.757   0.790  -1.105  -0.914  C06  VRD   6  
VRD  C08  C7   C  0  1  N  N  N   -8.607  -5.789  72.346   3.095  -0.221  -1.422  C08  VRD   7  
VRD  C09  C8   C  0  1  Y  N  N   -8.069  -5.258  71.000   3.897  -0.461  -0.169  C09  VRD   8  
VRD  C10  C9   C  0  1  Y  N  N   -7.043  -4.343  70.985   4.066  -1.747   0.308  C10  VRD   9  
VRD  C11  C10  C  0  1  Y  N  N   -6.561  -3.856  69.785   4.801  -1.967   1.458  C11  VRD  10  
VRD  C12  C11  C  0  1  Y  N  N   -7.110  -4.289  68.600   5.368  -0.901   2.130  C12  VRD  11  
VRD  C13  C12  C  0  1  Y  N  N   -8.138  -5.213  68.615   5.201   0.386   1.652  C13  VRD  12  
VRD  C14  C13  C  0  1  Y  N  N   -8.621  -5.696  69.816   4.470   0.605   0.500  C14  VRD  13  
VRD  C15  C14  C  0  1  Y  N  N  -10.011  -3.131  73.259   0.917  -2.486  -1.022  C15  VRD  14  
VRD  C16  C15  C  0  1  Y  N  N  -10.468  -1.944  73.809  -0.175  -3.299  -0.807  C16  VRD  15  
VRD  C17  C16  C  0  1  Y  N  N   -9.769  -1.356  74.859  -1.408  -2.756  -0.482  C17  VRD  16  
VRD  C18  C17  C  0  1  Y  N  N   -8.623  -1.955  75.352  -1.557  -1.385  -0.370  C18  VRD  17  
VRD  C20  C18  C  0  1  N  N  N   -7.877   0.040  76.349  -3.844  -1.767   0.155  C20  VRD  18  
VRD  C21  C19  C  0  1  N  N  N   -8.978   0.618  77.227  -5.095  -0.999   0.497  C21  VRD  19  
VRD  C24  C20  C  0  1  N  N  N   -5.995  -3.804  76.112  -1.261   1.927  -0.253  C24  VRD  20  
VRD  C26  C21  C  0  1  N  N  N   -6.443  -3.612  77.550  -1.417   2.436   1.140  C26  VRD  21  
VRD  N07  N1   N  0  1  Y  N  N   -8.211  -4.865  73.408   1.681  -0.062  -1.074  N07  VRD  22  
VRD  N28  N2   N  0  1  N  N  N   -5.674  -2.776  78.434  -2.413   3.295   1.436  N28  VRD  23  
VRD  O19  O1   O  0  1  N  N  N   -7.913  -1.360  76.416  -2.766  -0.852  -0.051  O19  VRD  24  
VRD  O22  O2   O  0  1  N  N  N   -9.052   1.851  77.407  -5.066   0.207   0.557  O22  VRD  25  
VRD  O23  O3   O  0  1  N  N  N   -9.814  -0.132  77.773  -6.242  -1.656   0.734  O23  VRD  26  
VRD  O25  O4   O  0  1  N  N  N   -4.854  -3.827  75.829  -1.970   2.360  -1.141  O25  VRD  27  
VRD  O27  O5   O  0  1  N  N  N   -7.409  -4.151  77.917  -0.647   2.077   2.007  O27  VRD  28  
VRD  H1   H1   H  0  1  N  N  N   -4.934  -7.466  75.346   0.468   3.089  -2.561  H1   VRD  29  
VRD  H2   H2   H  0  1  N  N  N   -5.130  -5.780  75.934   1.946   4.064  -2.374  H2   VRD  30  
VRD  H3   H3   H  0  1  N  N  N   -6.487  -6.947  76.084   2.040   2.430  -3.075  H3   VRD  31  
VRD  H4   H4   H  0  1  N  N  N   -6.656  -7.068  73.612   2.812   2.356  -0.751  H4   VRD  32  
VRD  H5   H5   H  0  1  N  N  N   -5.298  -5.901  73.462   1.311   3.136  -0.197  H5   VRD  33  
VRD  H6   H6   H  0  1  N  N  N   -9.704  -5.857  72.305   3.452   0.683  -1.915  H6   VRD  34  
VRD  H7   H7   H  0  1  N  N  N   -8.185  -6.785  72.546   3.210  -1.071  -2.095  H7   VRD  35  
VRD  H8   H8   H  0  1  N  N  N   -6.612  -4.003  71.915   3.622  -2.581  -0.216  H8   VRD  36  
VRD  H9   H9   H  0  1  N  N  N   -5.755  -3.137  69.777   4.932  -2.972   1.831  H9   VRD  37  
VRD  H10  H10  H  0  1  N  N  N   -6.739  -3.908  67.660   5.939  -1.072   3.031  H10  VRD  38  
VRD  H11  H11  H  0  1  N  N  N   -8.565  -5.558  67.685   5.644   1.219   2.177  H11  VRD  39  
VRD  H12  H12  H  0  1  N  N  N   -9.428  -6.414  69.827   4.339   1.610   0.126  H12  VRD  40  
VRD  H13  H13  H  0  1  N  N  N  -10.551  -3.589  72.444   1.872  -2.921  -1.275  H13  VRD  41  
VRD  H14  H14  H  0  1  N  N  N  -11.363  -1.477  73.424  -0.069  -4.371  -0.892  H14  VRD  42  
VRD  H15  H15  H  0  1  N  N  N  -10.122  -0.431  75.290  -2.256  -3.405  -0.316  H15  VRD  43  
VRD  H16  H16  H  0  1  N  N  N   -6.899   0.399  76.703  -3.596  -2.441   0.974  H16  VRD  44  
VRD  H17  H17  H  0  1  N  N  N   -8.031   0.361  75.308  -4.009  -2.345  -0.754  H17  VRD  45  
VRD  H18  H18  H  0  1  N  N  N   -5.966  -2.649  79.382  -3.029   3.581   0.743  H18  VRD  46  
VRD  H19  H19  H  0  1  N  N  N   -4.848  -2.322  78.100  -2.515   3.626   2.342  H19  VRD  47  
VRD  H20  H20  H  0  1  N  N  N  -10.425   0.390  78.280  -7.018  -1.121   0.949  H20  VRD  48  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
VRD  C12  C13  DOUB  Y  N   1  
VRD  C12  C11  SING  Y  N   2  
VRD  C13  C14  SING  Y  N   3  
VRD  C11  C10  DOUB  Y  N   4  
VRD  C14  C09  DOUB  Y  N   5  
VRD  C10  C09  SING  Y  N   6  
VRD  C09  C08  SING  N  N   7  
VRD  C08  N07  SING  N  N   8  
VRD  C15  C06  DOUB  Y  N   9  
VRD  C15  C16  SING  Y  N  10  
VRD  N07  C06  SING  Y  N  11  
VRD  N07  C03  SING  Y  N  12  
VRD  C06  C05  SING  Y  N  13  
VRD  C16  C17  DOUB  Y  N  14  
VRD  C02  C03  SING  N  N  15  
VRD  C02  C01  SING  N  N  16  
VRD  C03  C04  DOUB  Y  N  17  
VRD  C05  C04  SING  Y  N  18  
VRD  C05  C18  DOUB  Y  N  19  
VRD  C17  C18  SING  Y  N  20  
VRD  C04  C24  SING  N  N  21  
VRD  C18  O19  SING  N  N  22  
VRD  O25  C24  DOUB  N  N  23  
VRD  C24  C26  SING  N  N  24  
VRD  C20  O19  SING  N  N  25  
VRD  C20  C21  SING  N  N  26  
VRD  C21  O22  DOUB  N  N  27  
VRD  C21  O23  SING  N  N  28  
VRD  C26  O27  DOUB  N  N  29  
VRD  C26  N28  SING  N  N  30  
VRD  C01  H1   SING  N  N  31  
VRD  C01  H2   SING  N  N  32  
VRD  C01  H3   SING  N  N  33  
VRD  C02  H4   SING  N  N  34  
VRD  C02  H5   SING  N  N  35  
VRD  C08  H6   SING  N  N  36  
VRD  C08  H7   SING  N  N  37  
VRD  C10  H8   SING  N  N  38  
VRD  C11  H9   SING  N  N  39  
VRD  C12  H10  SING  N  N  40  
VRD  C13  H11  SING  N  N  41  
VRD  C14  H12  SING  N  N  42  
VRD  C15  H13  SING  N  N  43  
VRD  C16  H14  SING  N  N  44  
VRD  C17  H15  SING  N  N  45  
VRD  C20  H16  SING  N  N  46  
VRD  C20  H17  SING  N  N  47  
VRD  N28  H18  SING  N  N  48  
VRD  N28  H19  SING  N  N  49  
VRD  O23  H20  SING  N  N  50  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
VRD  SMILES            ACDLabs               12.01  "CCc2c(C(C(=O)N)=O)c1c(cccc1n2Cc3ccccc3)OCC(=O)O"  
VRD  InChI             InChI                 1.03   "InChI=1S/C21H20N2O5/c1-2-14-19(20(26)21(22)27)18-15(9-6-10-16(18)28-12-17(24)25)23(14)11-13-7-4-3-5-8-13/h3-10H,2,11-12H2,1H3,(H2,22,27)(H,24,25)"  
VRD  InChIKey          InChI                 1.03   BHLXTPHDSZUFHR-UHFFFAOYSA-N  
VRD  SMILES_CANONICAL  CACTVS                3.385  "CCc1n(Cc2ccccc2)c3cccc(OCC(O)=O)c3c1C(=O)C(N)=O"  
VRD  SMILES            CACTVS                3.385  "CCc1n(Cc2ccccc2)c3cccc(OCC(O)=O)c3c1C(=O)C(N)=O"  
VRD  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "CCc1c(c2c(n1Cc3ccccc3)cccc2OCC(=O)O)C(=O)C(=O)N"  
VRD  SMILES            "OpenEye OEToolkits"  2.0.7  "CCc1c(c2c(n1Cc3ccccc3)cccc2OCC(=O)O)C(=O)C(=O)N"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
VRD  "SYSTEMATIC NAME"  ACDLabs               12.01  "({3-[amino(oxo)acetyl]-1-benzyl-2-ethyl-1H-indol-4-yl}oxy)acetic acid"  
VRD  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.7  "2-[2-ethyl-3-oxamoyl-1-(phenylmethyl)indol-4-yl]oxyethanoic acid"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
VRD  "Create component"  2019-07-25  RCSB  
VRD  "Initial release"   2019-12-04  RCSB  
VRD  "Modify synonyms"   2021-03-08  RCSB  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     VRD
_pdbx_chem_comp_synonyms.name        Varespladib
_pdbx_chem_comp_synonyms.provenance  PDB
_pdbx_chem_comp_synonyms.type        ?
##
