data_WCD
#

_chem_comp.id                                   WCD
_chem_comp.name                                 "(2R,3R,5R)-3-{[2-({N-[(2R)-2,4-dihydroxy-3,3-dimethylbutanoyl]-beta-alanyl}amino)ethyl]sulfanyl}-7-oxo-1-azabicyclo[3.2.0]heptane-2-carboxylic acid"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C18 H29 N3 O7 S"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "(2R)-pantetheinylated carbapenam"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2020-10-12
_chem_comp.pdbx_modified_date                   2022-01-07
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       431.504
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    WCD
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       7KDY
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
WCD  C13  C1   C  0  1  N  N  N  31.379  -24.010  -21.792  -7.636  -0.358   1.540  C13  WCD   1  
WCD  C14  C2   C  0  1  N  N  N  30.291  -23.581  -19.582  -6.556  -2.114   0.129  C14  WCD   2  
WCD  C15  C3   C  0  1  N  N  N  31.477  -25.741  -19.996  -9.033  -1.803   0.056  C15  WCD   3  
WCD  C16  C4   C  0  1  N  N  N  30.606  -24.649  -20.632  -7.688  -1.088   0.196  C16  WCD   4  
WCD  C18  C5   C  0  1  N  N  R  29.295  -25.268  -21.153  -7.528  -0.076  -0.940  C18  WCD   5  
WCD  C19  C6   C  0  1  N  N  N  28.261  -24.182  -21.491  -6.271   0.727  -0.725  C19  WCD   6  
WCD  C21  C7   C  0  1  N  N  N  26.018  -23.299  -20.995  -3.847   0.888  -0.530  C21  WCD   7  
WCD  C22  C8   C  0  1  N  N  N  26.084  -22.336  -19.801  -2.626  -0.012  -0.732  C22  WCD   8  
WCD  C23  C9   C  0  1  N  N  N  25.098  -21.177  -19.961  -1.373   0.765  -0.419  C23  WCD   9  
WCD  C01  C10  C  0  1  N  N  N  18.204  -17.911  -19.274   6.955  -2.754  -0.335  C01  WCD  10  
WCD  C02  C11  C  0  1  N  N  N  17.730  -18.911  -20.141   7.756  -1.582  -0.835  C02  WCD  11  
WCD  C04  C12  C  0  1  N  N  R  19.380  -18.812  -18.946   6.602  -1.779   0.787  C04  WCD  12  
WCD  C05  C13  C  0  1  N  N  R  19.720  -20.816  -20.069   6.503   0.400  -0.191  C05  WCD  13  
WCD  C06  C14  C  0  1  N  N  R  21.057  -20.127  -19.656   5.096  -0.253  -0.342  C06  WCD  14  
WCD  C07  C15  C  0  1  N  N  N  20.642  -18.641  -19.754   5.129  -1.323   0.781  C07  WCD  15  
WCD  C09  C16  C  0  1  N  N  N  19.371  -22.089  -19.266   6.494   1.412   0.926  C09  WCD  16  
WCD  C24  C17  C  0  1  N  N  N  22.916  -19.458  -17.662   2.272   0.026  -0.426  C24  WCD  17  
WCD  C26  C18  C  0  1  N  N  N  23.912  -19.354  -18.817   1.051   0.926  -0.224  C26  WCD  18  
WCD  N03  N1   N  0  1  N  N  N  18.777  -19.709  -19.924   7.398  -0.726   0.142  N03  WCD  19  
WCD  N20  N2   N  0  1  N  N  N  27.106  -24.278  -20.819  -5.065   0.133  -0.834  N20  WCD  20  
WCD  N27  N3   N  0  1  N  N  N  24.814  -20.515  -18.828  -0.168   0.171  -0.528  N27  WCD  21  
WCD  O08  O1   O  0  1  N  N  N  16.766  -19.018  -20.895   8.481  -1.451  -1.798  O08  WCD  22  
WCD  O10  O2   O  0  1  N  N  N  24.627  -20.890  -21.061  -1.449   1.923  -0.069  O10  WCD  23  
WCD  O11  O3   O  0  1  N  N  N  28.487  -23.305  -22.323  -6.343   1.906  -0.453  O11  WCD  24  
WCD  O12  O4   O  0  1  N  N  N  32.621  -23.486  -21.329  -7.786  -1.303   2.601  O12  WCD  25  
WCD  O17  O5   O  0  1  N  N  N  28.749  -26.107  -20.136  -8.656   0.802  -0.960  O17  WCD  26  
WCD  O28  O6   O  0  1  N  N  N  18.855  -21.953  -18.131   6.062   2.662   0.695  O28  WCD  27  
WCD  O29  O7   O  0  1  N  N  N  19.590  -23.178  -19.839   6.875   1.099   2.029  O29  WCD  28  
WCD  S25  S1   S  0  1  N  N  N  21.527  -20.603  -18.008   3.780   0.961  -0.050  S25  WCD  29  
WCD  H1   H1   H  0  1  N  N  N  30.779  -23.195  -22.223  -6.678   0.152   1.640  H1   WCD  30  
WCD  H2   H2   H  0  1  N  N  N  31.571  -24.771  -22.563  -8.443   0.373   1.588  H2   WCD  31  
WCD  H3   H3   H  0  1  N  N  N  29.736  -24.037  -18.749  -6.732  -2.898   0.865  H3   WCD  32  
WCD  H4   H4   H  0  1  N  N  N  31.230  -23.150  -19.205  -6.522  -2.553  -0.868  H4   WCD  33  
WCD  H5   H5   H  0  1  N  N  N  29.680  -22.788  -20.038  -5.607  -1.622   0.342  H5   WCD  34  
WCD  H6   H6   H  0  1  N  N  N  30.931  -26.206  -19.162  -9.837  -1.066   0.043  H6   WCD  35  
WCD  H7   H7   H  0  1  N  N  N  31.715  -26.506  -20.750  -9.047  -2.372  -0.873  H7   WCD  36  
WCD  H8   H8   H  0  1  N  N  N  32.409  -25.294  -19.620  -9.175  -2.480   0.899  H8   WCD  37  
WCD  H9   H9   H  0  1  N  N  N  29.511  -25.852  -22.060  -7.463  -0.605  -1.891  H9   WCD  38  
WCD  H10  H10  H  0  1  N  N  N  26.156  -22.745  -21.935  -3.880   1.229   0.505  H10  WCD  39  
WCD  H11  H11  H  0  1  N  N  N  25.046  -23.813  -21.012  -3.778   1.749  -1.195  H11  WCD  40  
WCD  H12  H12  H  0  1  N  N  N  25.840  -22.889  -18.882  -2.695  -0.873  -0.067  H12  WCD  41  
WCD  H13  H13  H  0  1  N  N  N  27.104  -21.930  -19.725  -2.593  -0.353  -1.766  H13  WCD  42  
WCD  H14  H14  H  0  1  N  N  N  18.477  -16.969  -19.772   6.115  -3.030  -0.972  H14  WCD  43  
WCD  H15  H15  H  0  1  N  N  N  17.543  -17.697  -18.421   7.556  -3.607  -0.017  H15  WCD  44  
WCD  H16  H16  H  0  1  N  N  N  19.482  -19.156  -17.906   6.962  -2.079   1.771  H16  WCD  45  
WCD  H17  H17  H  0  1  N  N  N  19.794  -21.091  -21.131   6.811   0.867  -1.126  H17  WCD  46  
WCD  H18  H18  H  0  1  N  N  N  21.876  -20.374  -20.348   4.984  -0.719  -1.321  H18  WCD  47  
WCD  H19  H19  H  0  1  N  N  N  21.366  -17.960  -19.283   4.469  -2.156   0.540  H19  WCD  48  
WCD  H20  H20  H  0  1  N  N  N  20.451  -18.315  -20.787   4.860  -0.881   1.741  H20  WCD  49  
WCD  H21  H21  H  0  1  N  N  N  23.451  -19.817  -16.770   2.202  -0.835   0.238  H21  WCD  50  
WCD  H22  H22  H  0  1  N  N  N  22.504  -18.458  -17.465   2.304  -0.315  -1.461  H22  WCD  51  
WCD  H23  H23  H  0  1  N  N  N  24.506  -18.436  -18.701   1.018   1.267   0.810  H23  WCD  52  
WCD  H24  H24  H  0  1  N  N  N  23.360  -19.316  -19.768   1.120   1.787  -0.889  H24  WCD  53  
WCD  H25  H25  H  0  1  N  N  N  26.978  -25.036  -20.179  -5.005  -0.794  -1.114  H25  WCD  54  
WCD  H26  H26  H  0  1  N  N  N  25.227  -20.819  -17.969  -0.107  -0.756  -0.808  H26  WCD  55  
WCD  H27  H27  H  0  1  N  N  N  33.090  -23.093  -22.056  -7.763  -0.909   3.484  H27  WCD  56  
WCD  H28  H28  H  0  1  N  N  N  29.376  -26.785  -19.914  -8.775   1.306  -0.143  H28  WCD  57  
WCD  H29  H29  H  0  1  N  N  N  18.654  -22.808  -17.769   6.074   3.276   1.443  H29  WCD  58  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
WCD  O11  C19  DOUB  N  N   1  
WCD  C13  O12  SING  N  N   2  
WCD  C13  C16  SING  N  N   3  
WCD  C19  C18  SING  N  N   4  
WCD  C19  N20  SING  N  N   5  
WCD  C18  C16  SING  N  N   6  
WCD  C18  O17  SING  N  N   7  
WCD  O10  C23  DOUB  N  N   8  
WCD  C21  N20  SING  N  N   9  
WCD  C21  C22  SING  N  N  10  
WCD  O08  C02  DOUB  N  N  11  
WCD  C16  C15  SING  N  N  12  
WCD  C16  C14  SING  N  N  13  
WCD  C02  N03  SING  N  N  14  
WCD  C02  C01  SING  N  N  15  
WCD  C05  N03  SING  N  N  16  
WCD  C05  C06  SING  N  N  17  
WCD  C05  C09  SING  N  N  18  
WCD  C23  C22  SING  N  N  19  
WCD  C23  N27  SING  N  N  20  
WCD  N03  C04  SING  N  N  21  
WCD  O29  C09  DOUB  N  N  22  
WCD  C07  C06  SING  N  N  23  
WCD  C07  C04  SING  N  N  24  
WCD  C06  S25  SING  N  N  25  
WCD  C01  C04  SING  N  N  26  
WCD  C09  O28  SING  N  N  27  
WCD  N27  C26  SING  N  N  28  
WCD  C26  C24  SING  N  N  29  
WCD  S25  C24  SING  N  N  30  
WCD  C13  H1   SING  N  N  31  
WCD  C13  H2   SING  N  N  32  
WCD  C14  H3   SING  N  N  33  
WCD  C14  H4   SING  N  N  34  
WCD  C14  H5   SING  N  N  35  
WCD  C15  H6   SING  N  N  36  
WCD  C15  H7   SING  N  N  37  
WCD  C15  H8   SING  N  N  38  
WCD  C18  H9   SING  N  N  39  
WCD  C21  H10  SING  N  N  40  
WCD  C21  H11  SING  N  N  41  
WCD  C22  H12  SING  N  N  42  
WCD  C22  H13  SING  N  N  43  
WCD  C01  H14  SING  N  N  44  
WCD  C01  H15  SING  N  N  45  
WCD  C04  H16  SING  N  N  46  
WCD  C05  H17  SING  N  N  47  
WCD  C06  H18  SING  N  N  48  
WCD  C07  H19  SING  N  N  49  
WCD  C07  H20  SING  N  N  50  
WCD  C24  H21  SING  N  N  51  
WCD  C24  H22  SING  N  N  52  
WCD  C26  H23  SING  N  N  53  
WCD  C26  H24  SING  N  N  54  
WCD  N20  H25  SING  N  N  55  
WCD  N27  H26  SING  N  N  56  
WCD  O12  H27  SING  N  N  57  
WCD  O17  H28  SING  N  N  58  
WCD  O28  H29  SING  N  N  59  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
WCD  SMILES            ACDLabs               12.01  "C(O)C(C)(C)C(O)C(NCCC(NCCSC1C(N2C(CC2C1)=O)C(O)=O)=O)=O"  
WCD  InChI             InChI                 1.03   "InChI=1S/C18H29N3O7S/c1-18(2,9-22)15(25)16(26)20-4-3-12(23)19-5-6-29-11-7-10-8-13(24)21(10)14(11)17(27)28/h10-11,14-15,22,25H,3-9H2,1-2H3,(H,19,23)(H,20,26)(H,27,28)/t10-,11+,14-,15-/m0/s1"  
WCD  InChIKey          InChI                 1.03   XJMYKDFZQNYDFC-JLUCKKNBSA-N  
WCD  SMILES_CANONICAL  CACTVS                3.385  "CC(C)(CO)[C@@H](O)C(=O)NCCC(=O)NCCS[C@@H]1C[C@H]2CC(=O)N2[C@@H]1C(O)=O"  
WCD  SMILES            CACTVS                3.385  "CC(C)(CO)[CH](O)C(=O)NCCC(=O)NCCS[CH]1C[CH]2CC(=O)N2[CH]1C(O)=O"  
WCD  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "CC(C)(CO)[C@H](C(=O)NCCC(=O)NCCS[C@@H]1C[C@H]2CC(=O)N2[C@@H]1C(=O)O)O"  
WCD  SMILES            "OpenEye OEToolkits"  2.0.7  "CC(C)(CO)C(C(=O)NCCC(=O)NCCSC1CC2CC(=O)N2C1C(=O)O)O"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
WCD  "SYSTEMATIC NAME"  ACDLabs               12.01  "(2R,3R,5R)-3-{[2-({N-[(2R)-2,4-dihydroxy-3,3-dimethylbutanoyl]-beta-alanyl}amino)ethyl]sulfanyl}-7-oxo-1-azabicyclo[3.2.0]heptane-2-carboxylic acid"  
WCD  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.7  "(2~{R},3~{R},5~{R})-3-[2-[3-[[(2~{R})-3,3-dimethyl-2,4-bis(oxidanyl)butanoyl]amino]propanoylamino]ethylsulfanyl]-7-oxidanylidene-1-azabicyclo[3.2.0]heptane-2-carboxylic acid"  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     WCD
_pdbx_chem_comp_synonyms.name        "(2R)-pantetheinylated carbapenam"
_pdbx_chem_comp_synonyms.provenance  AUTHOR
_pdbx_chem_comp_synonyms.type        ?
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
WCD  "Create component"  2020-10-12  RCSB  
WCD  "Initial release"   2022-01-12  RCSB  
##
