data_WFD
# 
_chem_comp.id                                    WFD 
_chem_comp.name                                  "1-[4-(4-{4-(4-methylpiperazin-1-yl)-6-[(3-methyl-1H-pyrazol-5-yl)amino]pyrimidin-2-yl}phenyl)piperidin-1-yl]prop-2-en-1-one" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C27 H34 N8 O" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2020-10-26 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        486.612 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     WFD 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7KIA 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
WFD C1  C1  C 0 1 N N N N N N -38.124 9.915  -25.982 5.053  6.544  -0.281 C1  WFD 1  
WFD C2  C2  C 0 1 N N N N N N -37.227 11.465 -24.352 5.586  4.187  -0.447 C2  WFD 2  
WFD C4  C3  C 0 1 N N N N N N -34.825 11.530 -26.048 2.955  3.503  0.453  C4  WFD 3  
WFD N6  N1  N 0 1 Y N N N N N -31.631 14.568 -24.073 2.488  -1.265 0.052  N6  WFD 4  
WFD C8  C4  C 0 1 Y N N N N N -31.645 13.791 -25.165 3.811  -1.145 0.116  C8  WFD 5  
WFD C9  C5  C 0 1 Y N N N N N -29.531 14.461 -25.918 4.050  -3.540 0.043  C9  WFD 6  
WFD C12 C6  C 0 1 N N N N N N -27.235 17.026 -24.805 1.274  -5.967 -0.076 C12 WFD 7  
WFD C13 C7  C 0 1 Y N N N N N -32.667 14.619 -23.204 1.707  -0.195 0.106  C13 WFD 8  
WFD C10 C8  C 0 1 Y N N N N N -29.280 15.504 -25.122 2.720  -3.825 -0.022 C10 WFD 9  
WFD C11 C9  C 0 1 Y N N N N N -28.038 15.861 -25.432 2.578  -5.215 -0.016 C11 WFD 10 
WFD C14 C10 C 0 1 Y N N N N N -32.551 15.489 -22.102 0.236  -0.371 0.031  C14 WFD 11 
WFD C16 C11 C 0 1 Y N N N N N -31.083 16.794 -20.654 -1.680 -1.804 -0.164 C16 WFD 12 
WFD C21 C12 C 0 1 N N N N N N -31.892 17.518 -17.523 -4.649 -0.324 1.087  C21 WFD 13 
WFD C22 C13 C 0 1 N N N N N N -31.454 18.527 -16.435 -6.165 -0.539 1.021  C22 WFD 14 
WFD C23 C14 C 0 1 N N N N N N -30.257 20.012 -18.158 -6.060 -0.335 -1.497 C23 WFD 15 
WFD C24 C15 C 0 1 N N N N N N -30.667 19.044 -19.262 -4.546 -0.123 -1.403 C24 WFD 16 
WFD C25 C16 C 0 1 N N N N N N -29.115 19.421 -16.055 -7.682 0.952  -0.191 C25 WFD 17 
WFD C27 C17 C 0 1 N N N N N N -30.327 19.138 -13.883 -9.423 2.053  1.092  C27 WFD 18 
WFD C26 C18 C 0 1 N N N N N N -29.104 18.696 -14.697 -8.364 1.248  1.078  C26 WFD 19 
WFD C3  C19 C 0 1 N N N N N N -36.151 12.503 -23.999 4.984  2.797  -0.664 C3  WFD 20 
WFD N1  N2  N 0 1 N N N N N N -37.136 10.981 -25.749 4.509  5.186  -0.412 N1  WFD 21 
WFD C5  C20 C 0 1 N N N N N N -35.808 10.415 -26.031 3.558  4.893  0.670  C5  WFD 22 
WFD N2  N3  N 0 1 N N N N N N -34.907 12.359 -24.810 4.033  2.504  0.418  N2  WFD 23 
WFD C6  C21 C 0 1 Y N N N N N -33.821 13.089 -24.532 3.520  1.223  0.294  C6  WFD 24 
WFD N7  N4  N 0 1 Y N N N N N -33.763 13.892 -23.452 2.206  1.027  0.224  N7  WFD 25 
WFD C7  C22 C 0 1 Y N N N N N -32.757 13.019 -25.427 4.372  0.123  0.241  C7  WFD 26 
WFD N3  N5  N 0 1 N N N N N N -30.633 13.722 -26.027 4.622  -2.270 0.060  N3  WFD 27 
WFD N5  N6  N 0 1 Y N N N N N -28.481 14.177 -26.676 4.718  -4.722 0.095  N5  WFD 28 
WFD N4  N7  N 0 1 Y N N N N N -27.537 15.058 -26.376 3.769  -5.752 0.051  N4  WFD 29 
WFD C19 C23 C 0 1 Y N N N N N -33.657 16.010 -21.413 -0.605 0.740  0.079  C19 WFD 30 
WFD C18 C24 C 0 1 Y N N N N N -33.480 16.915 -20.353 -1.972 0.571  0.009  C18 WFD 31 
WFD C15 C25 C 0 1 Y N N N N N -31.271 15.904 -21.709 -0.311 -1.647 -0.094 C15 WFD 32 
WFD C17 C26 C 0 1 Y N N N N N -32.192 17.304 -19.962 -2.510 -0.698 -0.109 C17 WFD 33 
WFD C20 C27 C 0 1 N N N N N N -31.975 18.216 -18.912 -4.004 -0.877 -0.186 C20 WFD 34 
WFD N8  N8  N 0 1 N N N N N N -30.232 19.320 -16.830 -6.673 0.059  -0.221 N8  WFD 35 
WFD O1  O1  O 0 1 N N N N N N -28.121 20.065 -16.386 -8.029 1.513  -1.213 O1  WFD 36 
WFD H1  H1  H 0 1 N N N N N N -39.134 10.300 -25.781 5.701  6.759  -1.131 H1  WFD 37 
WFD H2  H2  H 0 1 N N N N N N -38.061 9.579  -27.028 4.234  7.263  -0.258 H2  WFD 38 
WFD H3  H3  H 0 1 N N N N N N -37.915 9.068  -25.312 5.628  6.617  0.642  H3  WFD 39 
WFD H4  H4  H 0 1 N N N N N N -38.216 11.923 -24.205 6.129  4.205  0.498  H4  WFD 40 
WFD H5  H5  H 0 1 N N N N N N -37.117 10.604 -23.676 6.270  4.419  -1.264 H5  WFD 41 
WFD H6  H6  H 0 1 N N N N N N -33.812 11.110 -26.129 2.272  3.271  1.270  H6  WFD 42 
WFD H7  H7  H 0 1 N N N N N N -35.027 12.170 -26.919 2.412  3.485  -0.492 H7  WFD 43 
WFD H8  H8  H 0 1 N N N N N N -26.233 17.066 -25.257 1.012  -6.159 -1.116 H8  WFD 44 
WFD H9  H9  H 0 1 N N N N N N -27.759 17.975 -24.992 1.377  -6.915 0.454  H9  WFD 45 
WFD H10 H10 H 0 1 N N N N N N -27.142 16.866 -23.721 0.490  -5.373 0.393  H10 WFD 46 
WFD H11 H11 H 0 1 N N N N N N -29.937 15.955 -24.393 1.918  -3.103 -0.070 H11 WFD 47 
WFD H12 H12 H 0 1 N N N N N N -30.085 17.091 -20.369 -2.105 -2.793 -0.256 H12 WFD 48 
WFD H13 H13 H 0 1 N N N N N N -32.880 17.111 -17.263 -4.436 0.741  1.170  H13 WFD 49 
WFD H14 H14 H 0 1 N N N N N N -31.160 16.699 -17.573 -4.246 -0.845 1.955  H14 WFD 50 
WFD H15 H15 H 0 1 N N N N N N -32.283 19.227 -16.251 -6.384 -1.607 1.029  H15 WFD 51 
WFD H16 H16 H 0 1 N N N N N N -31.230 17.973 -15.512 -6.639 -0.062 1.879  H16 WFD 52 
WFD H17 H17 H 0 1 N N N N N N -29.254 20.407 -18.378 -6.465 0.279  -2.302 H17 WFD 53 
WFD H18 H18 H 0 1 N N N N N N -30.978 20.842 -18.119 -6.273 -1.385 -1.696 H18 WFD 54 
WFD H19 H19 H 0 1 N N N N N N -29.841 18.338 -19.433 -4.069 -0.501 -2.307 H19 WFD 55 
WFD H20 H20 H 0 1 N N N N N N -30.853 19.620 -20.181 -4.333 0.941  -1.296 H20 WFD 56 
WFD H21 H21 H 0 1 N N N N N N -31.022 19.853 -14.298 -9.782 2.489  0.172  H21 WFD 57 
WFD H22 H22 H 0 1 N N N N N N -30.493 18.734 -12.895 -9.923 2.271  2.024  H22 WFD 58 
WFD H24 H24 H 0 1 N N N N N N -28.355 17.990 -14.370 -8.005 0.812  1.999  H24 WFD 59 
WFD H26 H26 H 0 1 N N N N N N -35.891 12.389 -22.936 4.464  2.772  -1.622 H26 WFD 60 
WFD H27 H27 H 0 1 N N N N N N -36.565 13.508 -24.169 5.779  2.052  -0.662 H27 WFD 61 
WFD H29 H29 H 0 1 N N N N N N -35.817 9.911  -27.009 2.763  5.638  0.667  H29 WFD 62 
WFD H30 H30 H 0 1 N N N N N N -35.537 9.691  -25.248 4.078  4.918  1.627  H30 WFD 63 
WFD H31 H31 H 0 1 N N N N N N -32.801 12.381 -26.298 5.443  0.250  0.296  H31 WFD 64 
WFD H32 H32 H 0 1 N N N N N N -30.704 13.084 -26.794 5.587  -2.172 0.033  H32 WFD 65 
WFD H33 H33 H 0 1 N N N N N N -28.414 13.438 -27.347 5.680  -4.833 0.147  H33 WFD 66 
WFD H34 H34 H 0 1 N N N N N N -34.655 15.712 -21.701 -0.186 1.731  0.172  H34 WFD 67 
WFD H35 H35 H 0 1 N N N N N N -34.341 17.313 -19.837 -2.625 1.431  0.046  H35 WFD 68 
WFD H36 H36 H 0 1 N N N N N N -30.409 15.524 -22.237 0.336  -2.511 -0.137 H36 WFD 69 
WFD H37 H37 H 0 1 N N N N N N -32.810 18.931 -18.872 -4.239 -1.937 -0.282 H37 WFD 70 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
WFD N5  N4  SING Y N 1  
WFD N5  C9  SING Y N 2  
WFD N4  C11 DOUB Y N 3  
WFD C4  C5  SING N N 4  
WFD C4  N2  SING N N 5  
WFD C5  N1  SING N N 6  
WFD N3  C9  SING N N 7  
WFD N3  C8  SING N N 8  
WFD C1  N1  SING N N 9  
WFD C9  C10 DOUB Y N 10 
WFD N1  C2  SING N N 11 
WFD C11 C10 SING Y N 12 
WFD C11 C12 SING N N 13 
WFD C7  C8  DOUB Y N 14 
WFD C7  C6  SING Y N 15 
WFD C8  N6  SING Y N 16 
WFD N2  C6  SING N N 17 
WFD N2  C3  SING N N 18 
WFD C6  N7  DOUB Y N 19 
WFD C2  C3  SING N N 20 
WFD N6  C13 DOUB Y N 21 
WFD N7  C13 SING Y N 22 
WFD C13 C14 SING N N 23 
WFD C14 C15 DOUB Y N 24 
WFD C14 C19 SING Y N 25 
WFD C15 C16 SING Y N 26 
WFD C19 C18 DOUB Y N 27 
WFD C16 C17 DOUB Y N 28 
WFD C18 C17 SING Y N 29 
WFD C17 C20 SING N N 30 
WFD C24 C20 SING N N 31 
WFD C24 C23 SING N N 32 
WFD C20 C21 SING N N 33 
WFD C23 N8  SING N N 34 
WFD C21 C22 SING N N 35 
WFD N8  C22 SING N N 36 
WFD N8  C25 SING N N 37 
WFD O1  C25 DOUB N N 38 
WFD C25 C26 SING N N 39 
WFD C26 C27 DOUB N N 40 
WFD C1  H1  SING N N 41 
WFD C1  H2  SING N N 42 
WFD C1  H3  SING N N 43 
WFD C2  H4  SING N N 44 
WFD C2  H5  SING N N 45 
WFD C4  H6  SING N N 46 
WFD C4  H7  SING N N 47 
WFD C12 H8  SING N N 48 
WFD C12 H9  SING N N 49 
WFD C12 H10 SING N N 50 
WFD C10 H11 SING N N 51 
WFD C16 H12 SING N N 52 
WFD C21 H13 SING N N 53 
WFD C21 H14 SING N N 54 
WFD C22 H15 SING N N 55 
WFD C22 H16 SING N N 56 
WFD C23 H17 SING N N 57 
WFD C23 H18 SING N N 58 
WFD C24 H19 SING N N 59 
WFD C24 H20 SING N N 60 
WFD C27 H21 SING N N 61 
WFD C27 H22 SING N N 62 
WFD C26 H24 SING N N 63 
WFD C3  H26 SING N N 64 
WFD C3  H27 SING N N 65 
WFD C5  H29 SING N N 66 
WFD C5  H30 SING N N 67 
WFD C7  H31 SING N N 68 
WFD N3  H32 SING N N 69 
WFD N5  H33 SING N N 70 
WFD C19 H34 SING N N 71 
WFD C18 H35 SING N N 72 
WFD C15 H36 SING N N 73 
WFD C20 H37 SING N N 74 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
WFD SMILES           ACDLabs              12.01 "CN1CCN(CC1)c2nc(nc(c2)Nc3cc(C)nn3)c4ccc(cc4)C5CCN(CC5)C(/C=C)=O"                                                                                                                         
WFD InChI            InChI                1.03  "InChI=1S/C27H34N8O/c1-4-26(36)35-11-9-21(10-12-35)20-5-7-22(8-6-20)27-29-23(28-24-17-19(2)31-32-24)18-25(30-27)34-15-13-33(3)14-16-34/h4-8,17-18,21H,1,9-16H2,2-3H3,(H2,28,29,30,31,32)" 
WFD InChIKey         InChI                1.03  GPGFFJPUFNKAFY-UHFFFAOYSA-N                                                                                                                                                               
WFD SMILES_CANONICAL CACTVS               3.385 "CN1CCN(CC1)c2cc(Nc3[nH]nc(C)c3)nc(n2)c4ccc(cc4)C5CCN(CC5)C(=O)C=C"                                                                                                                       
WFD SMILES           CACTVS               3.385 "CN1CCN(CC1)c2cc(Nc3[nH]nc(C)c3)nc(n2)c4ccc(cc4)C5CCN(CC5)C(=O)C=C"                                                                                                                       
WFD SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1cc([nH]n1)Nc2cc(nc(n2)c3ccc(cc3)C4CCN(CC4)C(=O)C=C)N5CCN(CC5)C"                                                                                                                       
WFD SMILES           "OpenEye OEToolkits" 2.0.7 "Cc1cc([nH]n1)Nc2cc(nc(n2)c3ccc(cc3)C4CCN(CC4)C(=O)C=C)N5CCN(CC5)C"                                                                                                                       
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
WFD "SYSTEMATIC NAME" ACDLabs              12.01 "1-[4-(4-{4-(4-methylpiperazin-1-yl)-6-[(3-methyl-1H-pyrazol-5-yl)amino]pyrimidin-2-yl}phenyl)piperidin-1-yl]prop-2-en-1-one"    
WFD "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "1-[4-[4-[4-(4-methylpiperazin-1-yl)-6-[(3-methyl-1~{H}-pyrazol-5-yl)amino]pyrimidin-2-yl]phenyl]piperidin-1-yl]prop-2-en-1-one" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
WFD "Create component" 2020-10-26 RCSB 
WFD "Initial release"  2021-02-10 RCSB 
WFD "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            WFD 
_pdbx_chem_comp_pcm.modified_residue_id                CYS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C27 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   SG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
