data_WPD
#

_chem_comp.id                                   WPD
_chem_comp.name                                 "(2S)-2-[(3-{3-[(2,4-diamino-6-ethylpyrimidin-5-yl)oxy]propoxy}phenyl)methyl]-3,3-difluoropropanoic acid"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C19 H24 F2 N4 O4"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2020-11-03
_chem_comp.pdbx_modified_date                   2021-07-02
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       410.415
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    WPD
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       7KM7
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
WPD  C10  C1   C  0  1  Y  N  N  -20.437  18.521   -5.626  -5.418  -0.028   0.515  C10  WPD   1  
WPD  O11  O1   O  0  1  N  N  N  -21.083  17.314   -5.906  -4.173  -0.459   0.853  O11  WPD   2  
WPD  C01  C2   C  0  1  N  N  N  -23.310  20.015   -5.025  -6.080  -3.211  -0.049  C01  WPD   3  
WPD  C02  C3   C  0  1  N  N  N  -22.277  19.292   -4.124  -5.696  -2.041  -0.957  C02  WPD   4  
WPD  C03  C4   C  0  1  Y  N  N  -20.942  19.459   -4.782  -6.206  -0.754  -0.361  C03  WPD   5  
WPD  C05  C5   C  0  1  Y  N  N  -19.092  20.790   -5.055  -7.875   0.824  -0.152  C05  WPD   6  
WPD  C08  C6   C  0  1  Y  N  N  -19.154  18.788   -6.180  -5.936   1.159   1.049  C08  WPD   7  
WPD  C12  C7   C  0  1  N  N  N  -21.724  17.176   -7.228  -3.088  -0.017   0.035  C12  WPD   8  
WPD  C13  C8   C  0  1  N  N  N  -22.635  15.962   -7.131  -1.777  -0.600   0.567  C13  WPD   9  
WPD  C14  C9   C  0  1  N  N  N  -23.912  16.335   -6.389  -0.616  -0.126  -0.309  C14  WPD  10  
WPD  C16  C10  C  0  1  Y  N  N  -25.739  17.915   -6.829   1.745  -0.345  -0.483  C16  WPD  11  
WPD  C17  C11  C  0  1  Y  N  N  -26.425  17.575   -5.685   1.684   0.482  -1.595  C17  WPD  12  
WPD  C18  C12  C  0  1  Y  N  N  -27.661  18.171   -5.425   2.842   0.816  -2.271  C18  WPD  13  
WPD  C19  C13  C  0  1  Y  N  N  -28.212  19.108   -6.274   4.061   0.327  -1.839  C19  WPD  14  
WPD  C20  C14  C  0  1  Y  N  N  -27.509  19.466   -7.439   4.125  -0.498  -0.731  C20  WPD  15  
WPD  C21  C15  C  0  1  N  N  N  -28.071  20.490   -8.425   5.455  -1.029  -0.264  C21  WPD  16  
WPD  C22  C16  C  0  1  N  N  S  -27.282  21.817   -8.463   6.068  -0.054   0.744  C22  WPD  17  
WPD  C23  C17  C  0  1  N  N  N  -28.197  22.898   -7.964   6.383   1.270   0.046  C23  WPD  18  
WPD  C26  C18  C  0  1  N  N  N  -26.835  22.188   -9.919   7.338  -0.642   1.303  C26  WPD  19  
WPD  C29  C19  C  0  1  Y  N  N  -26.271  18.871   -7.699   2.970  -0.835  -0.052  C29  WPD  20  
WPD  F24  F1   F  0  1  N  N  N  -28.668  22.662   -6.674   7.200   1.029  -1.064  F24  WPD  21  
WPD  F25  F2   F  0  1  N  N  N  -27.521  24.096   -7.966   5.192   1.872  -0.373  F25  WPD  22  
WPD  N04  N1   N  0  1  Y  N  N  -20.286  20.600   -4.489  -7.416  -0.305  -0.669  N04  WPD  23  
WPD  N06  N2   N  0  1  N  N  N  -18.446  21.941   -4.770  -9.144   1.258  -0.500  N06  WPD  24  
WPD  N07  N3   N  0  1  Y  N  N  -18.512  19.924   -5.902  -7.158   1.544   0.698  N07  WPD  25  
WPD  N09  N4   N  0  1  N  N  N  -18.583  17.890   -7.014  -5.183   1.921   1.931  N09  WPD  26  
WPD  O15  O2   O  0  1  N  N  N  -24.505  17.379   -7.165   0.609  -0.671   0.187  O15  WPD  27  
WPD  O27  O3   O  0  1  N  N  N  -27.791  22.418  -10.703   7.714  -1.729   0.933  O27  WPD  28  
WPD  O28  O4   O  0  1  N  N  N  -25.601  22.229  -10.104   8.051   0.041   2.212  O28  WPD  29  
WPD  H1   H1   H  0  1  N  N  N  -24.313  19.921   -4.583  -5.637  -3.066   0.936  H1   WPD  30  
WPD  H2   H2   H  0  1  N  N  N  -23.044  21.079   -5.107  -7.165  -3.258   0.044  H2   WPD  31  
WPD  H3   H3   H  0  1  N  N  N  -23.307  19.558   -6.026  -5.712  -4.141  -0.480  H3   WPD  32  
WPD  H4   H4   H  0  1  N  N  N  -22.265  19.745   -3.122  -4.611  -1.993  -1.050  H4   WPD  33  
WPD  H5   H5   H  0  1  N  N  N  -22.528  18.224   -4.041  -6.139  -2.185  -1.942  H5   WPD  34  
WPD  H6   H6   H  0  1  N  N  N  -20.963  17.021   -8.007  -3.246  -0.352  -0.990  H6   WPD  35  
WPD  H7   H7   H  0  1  N  N  N  -22.311  18.076   -7.463  -3.037   1.072   0.057  H7   WPD  36  
WPD  H8   H8   H  0  1  N  N  N  -22.889  15.614   -8.143  -1.619  -0.265   1.592  H8   WPD  37  
WPD  H9   H9   H  0  1  N  N  N  -22.117  15.159   -6.586  -1.828  -1.689   0.544  H9   WPD  38  
WPD  H10  H10  H  0  1  N  N  N  -23.679  16.693   -5.375  -0.773  -0.462  -1.334  H10  WPD  39  
WPD  H11  H11  H  0  1  N  N  N  -24.588  15.470   -6.326  -0.564   0.962  -0.287  H11  WPD  40  
WPD  H12  H12  H  0  1  N  N  N  -26.011  16.854   -4.995   0.732   0.863  -1.932  H12  WPD  41  
WPD  H13  H13  H  0  1  N  N  N  -28.201  17.890   -4.533   2.794   1.459  -3.137  H13  WPD  42  
WPD  H14  H14  H  0  1  N  N  N  -29.167  19.559   -6.048   4.964   0.590  -2.369  H14  WPD  43  
WPD  H15  H15  H  0  1  N  N  N  -29.110  20.712   -8.140   5.313  -2.000   0.210  H15  WPD  44  
WPD  H16  H16  H  0  1  N  N  N  -28.054  20.047   -9.432   6.124  -1.136  -1.118  H16  WPD  45  
WPD  H17  H17  H  0  1  N  N  N  -26.395  21.740   -7.817   5.361   0.122   1.555  H17  WPD  46  
WPD  H18  H18  H  0  1  N  N  N  -29.051  22.959   -8.655   6.900   1.933   0.740  H18  WPD  47  
WPD  H19  H19  H  0  1  N  N  N  -25.719  19.153   -8.583   3.021  -1.479   0.814  H19  WPD  48  
WPD  H20  H20  H  0  1  N  N  N  -17.579  21.969   -5.268  -9.684   0.737  -1.115  H20  WPD  49  
WPD  H21  H21  H  0  1  N  N  N  -19.013  22.718   -5.044  -9.494   2.083  -0.129  H21  WPD  50  
WPD  H22  H22  H  0  1  N  N  N  -17.697  18.237   -7.322  -5.549   2.742   2.297  H22  WPD  51  
WPD  H23  H23  H  0  1  N  N  N  -18.452  17.024   -6.532  -4.292   1.633   2.182  H23  WPD  52  
WPD  H24  H24  H  0  1  N  N  N  -25.423  22.481  -11.003   8.858  -0.376   2.541  H24  WPD  53  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
WPD  O27  C26  DOUB  N  N   1  
WPD  O28  C26  SING  N  N   2  
WPD  C26  C22  SING  N  N   3  
WPD  C22  C21  SING  N  N   4  
WPD  C22  C23  SING  N  N   5  
WPD  C21  C20  SING  N  N   6  
WPD  F25  C23  SING  N  N   7  
WPD  C23  F24  SING  N  N   8  
WPD  C29  C20  DOUB  Y  N   9  
WPD  C29  C16  SING  Y  N  10  
WPD  C20  C19  SING  Y  N  11  
WPD  C12  C13  SING  N  N  12  
WPD  C12  O11  SING  N  N  13  
WPD  O15  C16  SING  N  N  14  
WPD  O15  C14  SING  N  N  15  
WPD  C13  C14  SING  N  N  16  
WPD  N09  C08  SING  N  N  17  
WPD  C16  C17  DOUB  Y  N  18  
WPD  C19  C18  DOUB  Y  N  19  
WPD  C08  N07  DOUB  Y  N  20  
WPD  C08  C10  SING  Y  N  21  
WPD  O11  C10  SING  N  N  22  
WPD  N07  C05  SING  Y  N  23  
WPD  C17  C18  SING  Y  N  24  
WPD  C10  C03  DOUB  Y  N  25  
WPD  C05  N06  SING  N  N  26  
WPD  C05  N04  DOUB  Y  N  27  
WPD  C01  C02  SING  N  N  28  
WPD  C03  N04  SING  Y  N  29  
WPD  C03  C02  SING  N  N  30  
WPD  C01  H1   SING  N  N  31  
WPD  C01  H2   SING  N  N  32  
WPD  C01  H3   SING  N  N  33  
WPD  C02  H4   SING  N  N  34  
WPD  C02  H5   SING  N  N  35  
WPD  C12  H6   SING  N  N  36  
WPD  C12  H7   SING  N  N  37  
WPD  C13  H8   SING  N  N  38  
WPD  C13  H9   SING  N  N  39  
WPD  C14  H10  SING  N  N  40  
WPD  C14  H11  SING  N  N  41  
WPD  C17  H12  SING  N  N  42  
WPD  C18  H13  SING  N  N  43  
WPD  C19  H14  SING  N  N  44  
WPD  C21  H15  SING  N  N  45  
WPD  C21  H16  SING  N  N  46  
WPD  C22  H17  SING  N  N  47  
WPD  C23  H18  SING  N  N  48  
WPD  C29  H19  SING  N  N  49  
WPD  N06  H20  SING  N  N  50  
WPD  N06  H21  SING  N  N  51  
WPD  N09  H22  SING  N  N  52  
WPD  N09  H23  SING  N  N  53  
WPD  O28  H24  SING  N  N  54  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
WPD  SMILES            ACDLabs               12.01  "c1(c(CC)nc(N)nc1N)OCCCOc2cccc(CC(C(F)F)C(=O)O)c2"  
WPD  InChI             InChI                 1.03   "InChI=1S/C19H24F2N4O4/c1-2-14-15(17(22)25-19(23)24-14)29-8-4-7-28-12-6-3-5-11(9-12)10-13(16(20)21)18(26)27/h3,5-6,9,13,16H,2,4,7-8,10H2,1H3,(H,26,27)(H4,22,23,24,25)/t13-/m1/s1"  
WPD  InChIKey          InChI                 1.03   QMHPAIITCHQDEY-CYBMUJFWSA-N  
WPD  SMILES_CANONICAL  CACTVS                3.385  "CCc1nc(N)nc(N)c1OCCCOc2cccc(C[C@H](C(F)F)C(O)=O)c2"  
WPD  SMILES            CACTVS                3.385  "CCc1nc(N)nc(N)c1OCCCOc2cccc(C[CH](C(F)F)C(O)=O)c2"  
WPD  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "CCc1c(c(nc(n1)N)N)OCCCOc2cccc(c2)C[C@H](C(F)F)C(=O)O"  
WPD  SMILES            "OpenEye OEToolkits"  2.0.7  "CCc1c(c(nc(n1)N)N)OCCCOc2cccc(c2)CC(C(F)F)C(=O)O"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
WPD  "SYSTEMATIC NAME"  ACDLabs               12.01  "(2S)-2-[(3-{3-[(2,4-diamino-6-ethylpyrimidin-5-yl)oxy]propoxy}phenyl)methyl]-3,3-difluoropropanoic acid"  
WPD  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.7  "(2~{S})-2-[[3-[3-[2,4-bis(azanyl)-6-ethyl-pyrimidin-5-yl]oxypropoxy]phenyl]methyl]-3,3-bis(fluoranyl)propanoic acid"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
WPD  "Create component"  2020-11-03  RCSB  
WPD  "Initial release"   2021-07-07  RCSB  
##
