data_XGD
#

_chem_comp.id                                   XGD
_chem_comp.name                                 "4'-methoxy-N,N-dimethyl-3'-{[3-(2-{[2-(2H-1,2,3-triazol-2-yl)benzene-1-carbonyl]amino}ethyl)phenyl]sulfamoyl}[1,1'-biphenyl]-3-carboxamide"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C33 H32 N6 O5 S"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2020-12-16
_chem_comp.pdbx_modified_date                   2021-02-05
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       624.709
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    XGD
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       7L1V
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
XGD  N1   N1   N  0  1  N  N  N  125.303  126.432  158.278  -4.822   0.379   0.005  N1   XGD   1  
XGD  N3   N2   N  0  1  Y  N  N  124.562  126.154  155.394  -4.314  -4.586  -1.164  N3   XGD   2  
XGD  C4   C1   C  0  1  N  N  N  124.969  125.133  158.842  -3.666   1.234   0.287  C4   XGD   3  
XGD  C5   C2   C  0  1  N  N  N  124.439  127.449  158.322  -4.885  -0.863   0.525  C5   XGD   4  
XGD  C6   C3   C  0  1  Y  N  N  124.673  128.587  157.378  -6.049  -1.725   0.242  C6   XGD   5  
XGD  C7   C4   C  0  1  Y  N  N  125.159  129.785  157.894  -7.340  -1.278   0.530  C7   XGD   6  
XGD  C8   C5   C  0  1  Y  N  N  125.378  130.864  157.056  -8.424  -2.087   0.262  C8   XGD   7  
XGD  C10  C6   C  0  1  Y  N  N  124.634  129.583  155.171  -6.968  -3.793  -0.591  C10  XGD   8  
XGD  C13  C7   C  0  1  Y  N  N  122.567  125.989  154.467  -2.475  -3.501  -0.811  C13  XGD   9  
XGD  C15  C8   C  0  1  Y  N  N  124.346  122.952  162.925  -1.574   5.097   1.247  C15  XGD  10  
XGD  C17  C9   C  0  1  Y  N  N  120.186  122.042  160.366   2.333   2.613  -0.063  C17  XGD  11  
XGD  C20  C10  C  0  1  Y  N  N  117.981  124.154  162.593   4.320  -0.566  -0.340  C20  XGD  12  
XGD  C21  C11  C  0  1  Y  N  N  116.942  125.070  162.434   5.112  -0.299  -1.456  C21  XGD  13  
XGD  C22  C12  C  0  1  Y  N  N  116.334  125.647  163.534   6.016  -1.241  -1.907  C22  XGD  14  
XGD  C24  C13  C  0  1  Y  N  N  117.765  124.389  164.999   5.355  -2.731  -0.138  C24  XGD  15  
XGD  C26  C14  C  0  1  N  N  N  116.490  122.334  166.646   6.855  -5.787   1.550  C26  XGD  16  
XGD  C28  C15  C  0  1  Y  N  N  118.368  123.808  163.887   4.442  -1.784   0.321  C28  XGD  17  
XGD  N    N3   N  0  1  N  N  N  122.713  121.084  160.175   0.653   4.215  -1.540  N    XGD  18  
XGD  C    C16  C  0  1  Y  N  N  123.680  121.804  160.931  -0.459   4.240  -0.696  C    XGD  19  
XGD  O    O1   O  0  1  N  N  N  123.467  127.447  159.070  -3.982  -1.273   1.229  O    XGD  20  
XGD  C1   C17  C  0  1  Y  N  N  124.532  122.618  160.196  -1.555   3.429  -0.963  C1   XGD  21  
XGD  C11  C18  C  0  1  Y  N  N  124.406  128.494  156.003  -5.866  -2.994  -0.324  C11  XGD  22  
XGD  C12  C19  C  0  1  Y  N  N  123.733  125.316  154.787  -3.012  -4.691  -1.311  C12  XGD  23  
XGD  C14  C20  C  0  1  Y  N  N  125.158  123.786  162.178  -2.665   4.293   0.975  C14  XGD  24  
XGD  C16  C21  C  0  1  Y  N  N  123.596  121.968  162.305  -0.472   5.075   0.414  C16  XGD  25  
XGD  C18  C22  C  0  1  Y  N  N  119.445  122.460  161.463   3.232   1.671  -0.516  C18  XGD  26  
XGD  C19  C23  C  0  1  Y  N  N  118.727  123.654  161.414   3.354   0.450   0.146  C19  XGD  27  
XGD  C2   C24  C  0  1  Y  N  N  125.237  123.649  160.802  -2.655   3.459  -0.129  C2   XGD  28  
XGD  C23  C25  C  0  1  Y  N  N  116.746  125.315  164.810   6.142  -2.452  -1.257  C23  XGD  29  
XGD  C25  C26  C  0  1  N  N  N  118.247  124.089  166.382   5.491  -4.028   0.559  C25  XGD  30  
XGD  C27  C27  C  0  1  N  N  N  117.985  122.946  168.484   7.901  -3.891   0.227  C27  XGD  31  
XGD  C29  C28  C  0  1  Y  N  N  118.754  124.394  160.240   2.566   0.186   1.265  C29  XGD  32  
XGD  C3   C29  C  0  1  N  N  N  125.897  124.708  159.954  -3.844   2.580  -0.419  C3   XGD  33  
XGD  C30  C30  C  0  1  Y  N  N  119.477  123.979  159.139   1.669   1.132   1.714  C30  XGD  34  
XGD  C31  C31  C  0  1  Y  N  N  120.202  122.805  159.189   1.554   2.349   1.056  C31  XGD  35  
XGD  C32  C32  C  0  1  N  N  N  121.108  123.157  157.010  -0.109   2.937   2.649  C32  XGD  36  
XGD  C9   C33  C  0  1  Y  N  N  125.120  130.763  155.707  -8.238  -3.343  -0.291  C9   XGD  37  
XGD  N2   N4   N  0  1  Y  N  N  123.881  127.302  155.425  -4.579  -3.448  -0.627  N2   XGD  38  
XGD  N4   N5   N  0  1  Y  N  N  122.665  127.247  154.872  -3.500  -2.785  -0.407  N4   XGD  39  
XGD  N5   N6   N  0  1  N  N  N  117.604  123.158  167.099   6.714  -4.553   0.772  N5   XGD  40  
XGD  O1   O2   O  0  1  N  N  N  120.834  119.703  159.461   2.232   5.162   0.103  O1   XGD  41  
XGD  O2   O3   O  0  1  N  N  N  121.122  120.146  161.874   3.075   4.107  -2.000  O2   XGD  42  
XGD  O3   O4   O  0  1  N  N  N  119.209  124.692  166.815   4.500  -4.620   0.940  O3   XGD  43  
XGD  O4   O5   O  0  1  N  N  N  120.984  122.339  158.171   0.669   3.279   1.501  O4   XGD  44  
XGD  S    S1   S  0  1  N  N  N  121.195  120.595  160.519   2.178   4.156  -0.899  S    XGD  45  
XGD  H1   H1   H  0  1  N  N  N  126.197  126.566  157.849  -5.544   0.707  -0.553  H1   XGD  46  
XGD  H2   H2   H  0  1  N  N  N  123.945  125.178  159.240  -3.587   1.395   1.362  H2   XGD  47  
XGD  H3   H3   H  0  1  N  N  N  125.018  124.381  158.040  -2.760   0.750  -0.077  H3   XGD  48  
XGD  H4   H4   H  0  1  N  N  N  125.366  129.872  158.950  -7.490  -0.299   0.961  H4   XGD  49  
XGD  H5   H5   H  0  1  N  N  N  125.754  131.791  157.462  -9.422  -1.740   0.486  H5   XGD  50  
XGD  H6   H6   H  0  1  N  N  N  124.433  129.509  154.112  -6.831  -4.774  -1.023  H6   XGD  51  
XGD  H7   H7   H  0  1  N  N  N  121.713  125.558  153.967  -1.431  -3.227  -0.765  H7   XGD  52  
XGD  H8   H8   H  0  1  N  N  N  124.297  123.069  163.997  -1.585   5.746   2.110  H8   XGD  53  
XGD  H9   H9   H  0  1  N  N  N  116.608  125.332  161.441   5.017   0.646  -1.970  H9   XGD  54  
XGD  H10  H10  H  0  1  N  N  N  115.534  126.360  163.395   6.627  -1.029  -2.773  H10  XGD  55  
XGD  H11  H11  H  0  1  N  N  N  116.175  121.663  167.459   6.803  -6.646   0.881  H11  XGD  56  
XGD  H12  H12  H  0  1  N  N  N  115.648  122.981  166.358   7.817  -5.784   2.064  H12  XGD  57  
XGD  H13  H13  H  0  1  N  N  N  116.806  121.736  165.779   6.052  -5.848   2.284  H13  XGD  58  
XGD  H14  H14  H  0  1  N  N  N  119.149  123.076  164.029   3.831  -1.994   1.186  H14  XGD  59  
XGD  H15  H15  H  0  1  N  N  N  123.185  120.234  159.941   0.531   4.233  -2.503  H15  XGD  60  
XGD  H16  H16  H  0  1  N  N  N  124.648  122.446  159.136  -1.548   2.778  -1.825  H16  XGD  61  
XGD  H17  H17  H  0  1  N  N  N  123.935  124.276  154.576  -2.469  -5.525  -1.731  H17  XGD  62  
XGD  H18  H18  H  0  1  N  N  N  125.737  124.552  162.673  -3.526   4.314   1.625  H18  XGD  63  
XGD  H19  H19  H  0  1  N  N  N  122.948  121.331  162.889   0.378   5.707   0.625  H19  XGD  64  
XGD  H20  H20  H  0  1  N  N  N  119.425  121.857  162.359   3.841   1.878  -1.384  H20  XGD  65  
XGD  H21  H21  H  0  1  N  N  N  116.274  125.777  165.665   6.850  -3.185  -1.615  H21  XGD  66  
XGD  H22  H22  H  0  1  N  N  N  117.360  122.152  168.919   8.049  -4.204  -0.807  H22  XGD  67  
XGD  H23  H23  H  0  1  N  N  N  119.043  122.648  168.532   7.763  -2.810   0.263  H23  XGD  68  
XGD  H24  H24  H  0  1  N  N  N  117.841  123.878  169.051   8.774  -4.166   0.818  H24  XGD  69  
XGD  H25  H25  H  0  1  N  N  N  118.196  125.317  160.186   2.658  -0.759   1.780  H25  XGD  70  
XGD  H26  H26  H  0  1  N  N  N  126.823  124.302  159.520  -3.924   2.419  -1.494  H26  XGD  71  
XGD  H27  H27  H  0  1  N  N  N  126.137  125.579  160.581  -4.751   3.063  -0.056  H27  XGD  72  
XGD  H28  H28  H  0  1  N  N  N  119.475  124.574  158.237   1.061   0.929   2.583  H28  XGD  73  
XGD  H29  H29  H  0  1  N  N  N  121.762  122.660  156.279   0.554   2.738   3.491  H29  XGD  74  
XGD  H30  H30  H  0  1  N  N  N  120.114  123.315  156.565  -0.773   3.765   2.898  H30  XGD  75  
XGD  H31  H31  H  0  1  N  N  N  121.543  124.128  157.290  -0.702   2.048   2.435  H31  XGD  76  
XGD  H32  H32  H  0  1  N  N  N  125.298  131.611  155.062  -9.093  -3.969  -0.501  H32  XGD  77  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
XGD  C13  C12  SING  Y  N   1  
XGD  C13  N4   DOUB  Y  N   2  
XGD  C12  N3   DOUB  Y  N   3  
XGD  N4   N2   SING  Y  N   4  
XGD  C10  C9   DOUB  Y  N   5  
XGD  C10  C11  SING  Y  N   6  
XGD  N3   N2   SING  Y  N   7  
XGD  N2   C11  SING  N  N   8  
XGD  C9   C8   SING  Y  N   9  
XGD  C11  C6   DOUB  Y  N  10  
XGD  C32  O4   SING  N  N  11  
XGD  C8   C7   DOUB  Y  N  12  
XGD  C6   C7   SING  Y  N  13  
XGD  C6   C5   SING  N  N  14  
XGD  O4   C31  SING  N  N  15  
XGD  N1   C5   SING  N  N  16  
XGD  N1   C4   SING  N  N  17  
XGD  C5   O    DOUB  N  N  18  
XGD  C4   C3   SING  N  N  19  
XGD  C30  C31  DOUB  Y  N  20  
XGD  C30  C29  SING  Y  N  21  
XGD  C31  C17  SING  Y  N  22  
XGD  O1   S    DOUB  N  N  23  
XGD  C3   C2   SING  N  N  24  
XGD  N    S    SING  N  N  25  
XGD  N    C    SING  N  N  26  
XGD  C1   C2   DOUB  Y  N  27  
XGD  C1   C    SING  Y  N  28  
XGD  C29  C19  DOUB  Y  N  29  
XGD  C17  S    SING  N  N  30  
XGD  C17  C18  DOUB  Y  N  31  
XGD  S    O2   DOUB  N  N  32  
XGD  C2   C14  SING  Y  N  33  
XGD  C    C16  DOUB  Y  N  34  
XGD  C19  C18  SING  Y  N  35  
XGD  C19  C20  SING  N  N  36  
XGD  C14  C15  DOUB  Y  N  37  
XGD  C16  C15  SING  Y  N  38  
XGD  C21  C20  DOUB  Y  N  39  
XGD  C21  C22  SING  Y  N  40  
XGD  C20  C28  SING  Y  N  41  
XGD  C22  C23  DOUB  Y  N  42  
XGD  C28  C24  DOUB  Y  N  43  
XGD  C23  C24  SING  Y  N  44  
XGD  C24  C25  SING  N  N  45  
XGD  C25  O3   DOUB  N  N  46  
XGD  C25  N5   SING  N  N  47  
XGD  C26  N5   SING  N  N  48  
XGD  N5   C27  SING  N  N  49  
XGD  N1   H1   SING  N  N  50  
XGD  C4   H2   SING  N  N  51  
XGD  C4   H3   SING  N  N  52  
XGD  C7   H4   SING  N  N  53  
XGD  C8   H5   SING  N  N  54  
XGD  C10  H6   SING  N  N  55  
XGD  C13  H7   SING  N  N  56  
XGD  C15  H8   SING  N  N  57  
XGD  C21  H9   SING  N  N  58  
XGD  C22  H10  SING  N  N  59  
XGD  C26  H11  SING  N  N  60  
XGD  C26  H12  SING  N  N  61  
XGD  C26  H13  SING  N  N  62  
XGD  C28  H14  SING  N  N  63  
XGD  N    H15  SING  N  N  64  
XGD  C1   H16  SING  N  N  65  
XGD  C12  H17  SING  N  N  66  
XGD  C14  H18  SING  N  N  67  
XGD  C16  H19  SING  N  N  68  
XGD  C18  H20  SING  N  N  69  
XGD  C23  H21  SING  N  N  70  
XGD  C27  H22  SING  N  N  71  
XGD  C27  H23  SING  N  N  72  
XGD  C27  H24  SING  N  N  73  
XGD  C29  H25  SING  N  N  74  
XGD  C3   H26  SING  N  N  75  
XGD  C3   H27  SING  N  N  76  
XGD  C30  H28  SING  N  N  77  
XGD  C32  H29  SING  N  N  78  
XGD  C32  H30  SING  N  N  79  
XGD  C32  H31  SING  N  N  80  
XGD  C9   H32  SING  N  N  81  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
XGD  SMILES            ACDLabs               12.01  "N(C(=O)c1ccccc1n2nccn2)CCc5cc(NS(c4cc(c3cc(C(=O)N(C)C)ccc3)ccc4OC)(=O)=O)ccc5"  
XGD  InChI             InChI                 1.03   "InChI=1S/C33H32N6O5S/c1-38(2)33(41)26-10-7-9-24(21-26)25-14-15-30(44-3)31(22-25)45(42,43)37-27-11-6-8-23(20-27)16-17-34-32(40)28-12-4-5-13-29(28)39-35-18-19-36-39/h4-15,18-22,37H,16-17H2,1-3H3,(H,34,40)"  
XGD  InChIKey          InChI                 1.03   AMTAVIZAVFJXIJ-UHFFFAOYSA-N  
XGD  SMILES_CANONICAL  CACTVS                3.385  "COc1ccc(cc1[S](=O)(=O)Nc2cccc(CCNC(=O)c3ccccc3n4nccn4)c2)c5cccc(c5)C(=O)N(C)C"  
XGD  SMILES            CACTVS                3.385  "COc1ccc(cc1[S](=O)(=O)Nc2cccc(CCNC(=O)c3ccccc3n4nccn4)c2)c5cccc(c5)C(=O)N(C)C"  
XGD  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "CN(C)C(=O)c1cccc(c1)c2ccc(c(c2)S(=O)(=O)Nc3cccc(c3)CCNC(=O)c4ccccc4n5nccn5)OC"  
XGD  SMILES            "OpenEye OEToolkits"  2.0.7  "CN(C)C(=O)c1cccc(c1)c2ccc(c(c2)S(=O)(=O)Nc3cccc(c3)CCNC(=O)c4ccccc4n5nccn5)OC"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
XGD  "SYSTEMATIC NAME"  ACDLabs               12.01  "4'-methoxy-N,N-dimethyl-3'-{[3-(2-{[2-(2H-1,2,3-triazol-2-yl)benzene-1-carbonyl]amino}ethyl)phenyl]sulfamoyl}[1,1'-biphenyl]-3-carboxamide"  
XGD  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.7  "~{N}-[2-[3-[[5-[3-(dimethylcarbamoyl)phenyl]-2-methoxy-phenyl]sulfonylamino]phenyl]ethyl]-2-(1,2,3-triazol-2-yl)benzamide"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
XGD  "Create component"  2020-12-16  RCSB  
XGD  "Initial release"   2021-02-10  RCSB  
##
