data_XPD
#

_chem_comp.id                                   XPD
_chem_comp.name                                 "6-{4-[(2-chloro-4-fluorophenoxy)methyl]piperidine-1-carbonyl}-2H-1,4-benzoxazin-3(4H)-one"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C21 H20 Cl F N2 O4"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2020-12-23
_chem_comp.pdbx_modified_date                   2021-08-06
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       418.846
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    XPD
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       7L4T
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
XPD  C4    C1   C   0  1  Y  N  N  -30.072  10.096  -61.382   6.446  -0.571   1.212  C4    XPD   1  
XPD  C5    C2   C   0  1  Y  N  N  -19.255  11.860  -57.416  -3.752  -0.369  -0.569  C5    XPD   2  
XPD  C6    C3   C   0  1  Y  N  N  -31.228  11.392  -59.749   6.304   1.624   0.254  C6    XPD   3  
XPD  C7    C4   C   0  1  Y  N  N  -20.447  11.307  -57.860  -3.559  -1.504   0.223  C7    XPD   4  
XPD  C8    C5   C   0  1  Y  N  N  -18.078  11.582  -58.088  -4.633   0.611  -0.158  C8    XPD   5  
XPD  C10   C6   C   0  1  Y  N  N  -28.835  11.520  -59.924   4.487   0.080  -0.006  C10   XPD   6  
XPD  C13   C7   C   0  1  N  N  N  -15.607  11.580  -58.124  -5.443   2.830  -0.375  C13   XPD   7  
XPD  C15   C8   C   0  1  N  N  N  -15.791  10.416  -59.039  -5.858   2.781   1.075  C15   XPD   8  
XPD  C17   C9   C   0  1  N  N  N  -25.182  11.839  -57.818   0.846  -3.093  -0.642  C17   XPD   9  
XPD  C20   C10  C   0  1  N  N  N  -25.257  12.053  -59.317   1.344  -1.659  -0.832  C20   XPD  10  
XPD  C21   C11  C   0  1  N  N  N  -26.469  11.361  -59.918   2.736  -1.516  -0.212  C21   XPD  11  
XPD  C1    C12  C   0  1  Y  N  N  -20.466  10.473  -58.969  -4.261  -1.643   1.423  C1    XPD  12  
XPD  C2    C13  C   0  1  Y  N  N  -19.297  10.194  -59.642  -5.143  -0.663   1.826  C2    XPD  13  
XPD  C3    C14  C   0  1  Y  N  N  -28.866  10.610  -60.959   5.190  -0.869   0.721  C3    XPD  14  
XPD  C9    C15  C   0  1  Y  N  N  -18.113  10.751  -59.193  -5.331   0.467   1.044  C9    XPD  15  
XPD  C11   C16  C   0  1  Y  N  N  -31.248  10.483  -60.780   7.004   0.675   0.979  C11   XPD  16  
XPD  C12   C17  C   0  1  Y  N  N  -30.023  11.906  -59.328   5.047   1.328  -0.240  C12   XPD  17  
XPD  C14   C18  C   0  1  N  N  N  -21.725  11.591  -57.130  -2.615  -2.555  -0.206  C14   XPD  18  
XPD  C16   C19  C   0  1  N  N  N  -23.950  11.628  -59.934   0.380  -0.687  -0.148  C16   XPD  19  
XPD  C18   C20  C   0  1  N  N  N  -22.796  12.389  -59.298  -1.004  -0.808  -0.795  C18   XPD  20  
XPD  C19   C21  C   0  1  N  N  N  -23.998  12.525  -57.165  -0.532  -3.241  -1.294  C19   XPD  21  
XPD  N22   N1   N   0  1  N  N  N  -16.825  12.108  -57.697  -4.837   1.761  -0.935  N22   XPD  22  
XPD  N23   N2   N   0  1  N  N  N  -22.744  12.242  -57.844  -1.428  -2.214  -0.745  N23   XPD  23  
XPD  O24   O1   O   0  1  N  N  N  -14.477  11.967  -57.832  -5.658   3.824  -1.036  O24   XPD  24  
XPD  O25   O2   O   0  1  N  N  N  -21.830  11.229  -55.961  -2.909  -3.727  -0.075  O25   XPD  25  
XPD  O26   O3   O   0  1  N  N  N  -16.947  10.454  -59.871  -6.196   1.439   1.433  O26   XPD  26  
XPD  O27   O4   O   0  1  N  N  N  -27.634  12.074  -59.467   3.250  -0.212  -0.490  O27   XPD  27  
XPD  F28   F1   F   0  1  N  N  N  -32.420   9.973  -61.201   8.233   0.964   1.460  F28   XPD  28  
XPD  CL29  CL1  CL  0  0  N  N  N  -30.066  13.037  -58.035   4.169   2.518  -1.149  CL29  XPD  29  
XPD  H1    H1   H   0  1  N  N  N  -30.095   9.383  -62.193   6.991  -1.309   1.782  H1    XPD  30  
XPD  H2    H2   H   0  1  N  N  N  -19.246  12.505  -56.550  -3.211  -0.257  -1.497  H2    XPD  31  
XPD  H3    H3   H   0  1  N  N  N  -32.148  11.699  -59.275   6.741   2.595   0.073  H3    XPD  32  
XPD  H4    H4   H   0  1  N  N  N  -15.850   9.508  -58.421  -5.035   3.127   1.700  H4    XPD  33  
XPD  H5    H5   H   0  1  N  N  N  -14.908  10.358  -59.692  -6.724   3.426   1.226  H5    XPD  34  
XPD  H6    H6   H   0  1  N  N  N  -26.104  12.231  -57.364   1.546  -3.786  -1.110  H6    XPD  35  
XPD  H7    H7   H   0  1  N  N  N  -25.108  10.759  -57.624   0.771  -3.315   0.422  H7    XPD  36  
XPD  H8    H8   H   0  1  N  N  N  -25.373  13.133  -59.492   1.396  -1.430  -1.897  H8    XPD  37  
XPD  H9    H9   H   0  1  N  N  N  -26.512  10.315  -59.579   2.669  -1.658   0.867  H9    XPD  38  
XPD  H10   H10  H   0  1  N  N  N  -26.412  11.388  -61.016   3.402  -2.267  -0.637  H10   XPD  39  
XPD  H11   H11  H   0  1  N  N  N  -21.398  10.042  -59.305  -4.114  -2.520   2.035  H11   XPD  40  
XPD  H12   H12  H   0  1  N  N  N  -19.305   9.549  -60.508  -5.686  -0.773   2.753  H12   XPD  41  
XPD  H13   H13  H   0  1  N  N  N  -27.948  10.301  -61.437   4.755  -1.841   0.903  H13   XPD  42  
XPD  H14   H14  H   0  1  N  N  N  -23.806  10.549  -59.773   0.309  -0.931   0.912  H14   XPD  43  
XPD  H15   H15  H   0  1  N  N  N  -23.973  11.838  -61.014   0.748   0.333  -0.264  H15   XPD  44  
XPD  H16   H16  H   0  1  N  N  N  -21.853  12.013  -59.722  -1.717  -0.192  -0.248  H16   XPD  45  
XPD  H17   H17  H   0  1  N  N  N  -22.906  13.457  -59.538  -0.952  -0.478  -1.832  H17   XPD  46  
XPD  H18   H18  H   0  1  N  N  N  -23.921  12.179  -56.124  -0.442  -3.109  -2.372  H18   XPD  47  
XPD  H19   H19  H   0  1  N  N  N  -24.169  13.612  -57.179  -0.934  -4.232  -1.079  H19   XPD  48  
XPD  H20   H20  H   0  1  N  N  N  -16.812  12.898  -57.084  -4.548   1.787  -1.860  H20   XPD  49  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
XPD  C4   C3    DOUB  Y  N   1  
XPD  C4   C11   SING  Y  N   2  
XPD  F28  C11   SING  N  N   3  
XPD  C3   C10   SING  Y  N   4  
XPD  C11  C6    DOUB  Y  N   5  
XPD  C16  C20   SING  N  N   6  
XPD  C16  C18   SING  N  N   7  
XPD  C10  O27   SING  N  N   8  
XPD  C10  C12   DOUB  Y  N   9  
XPD  C21  O27   SING  N  N  10  
XPD  C21  C20   SING  N  N  11  
XPD  O26  C9    SING  N  N  12  
XPD  O26  C15   SING  N  N  13  
XPD  C6   C12   SING  Y  N  14  
XPD  C2   C9    DOUB  Y  N  15  
XPD  C2   C1    SING  Y  N  16  
XPD  C12  CL29  SING  N  N  17  
XPD  C20  C17   SING  N  N  18  
XPD  C18  N23   SING  N  N  19  
XPD  C9   C8    SING  Y  N  20  
XPD  C15  C13   SING  N  N  21  
XPD  C1   C7    DOUB  Y  N  22  
XPD  C13  O24   DOUB  N  N  23  
XPD  C13  N22   SING  N  N  24  
XPD  C8   N22   SING  N  N  25  
XPD  C8   C5    DOUB  Y  N  26  
XPD  C7   C5    SING  Y  N  27  
XPD  C7   C14   SING  N  N  28  
XPD  N23  C19   SING  N  N  29  
XPD  N23  C14   SING  N  N  30  
XPD  C17  C19   SING  N  N  31  
XPD  C14  O25   DOUB  N  N  32  
XPD  C4   H1    SING  N  N  33  
XPD  C5   H2    SING  N  N  34  
XPD  C6   H3    SING  N  N  35  
XPD  C15  H4    SING  N  N  36  
XPD  C15  H5    SING  N  N  37  
XPD  C17  H6    SING  N  N  38  
XPD  C17  H7    SING  N  N  39  
XPD  C20  H8    SING  N  N  40  
XPD  C21  H9    SING  N  N  41  
XPD  C21  H10   SING  N  N  42  
XPD  C1   H11   SING  N  N  43  
XPD  C2   H12   SING  N  N  44  
XPD  C3   H13   SING  N  N  45  
XPD  C16  H14   SING  N  N  46  
XPD  C16  H15   SING  N  N  47  
XPD  C18  H16   SING  N  N  48  
XPD  C18  H17   SING  N  N  49  
XPD  C19  H18   SING  N  N  50  
XPD  C19  H19   SING  N  N  51  
XPD  N22  H20   SING  N  N  52  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
XPD  SMILES            ACDLabs               12.01  "c4cc(OCC3CCN(C(c2cc1NC(=O)COc1cc2)=O)CC3)c(cc4F)Cl"  
XPD  InChI             InChI                 1.03   "InChI=1S/C21H20ClFN2O4/c22-16-10-15(23)2-4-18(16)28-11-13-5-7-25(8-6-13)21(27)14-1-3-19-17(9-14)24-20(26)12-29-19/h1-4,9-10,13H,5-8,11-12H2,(H,24,26)"  
XPD  InChIKey          InChI                 1.03   UUUUFICXTVCJQV-UHFFFAOYSA-N  
XPD  SMILES_CANONICAL  CACTVS                3.385  "Fc1ccc(OCC2CCN(CC2)C(=O)c3ccc4OCC(=O)Nc4c3)c(Cl)c1"  
XPD  SMILES            CACTVS                3.385  "Fc1ccc(OCC2CCN(CC2)C(=O)c3ccc4OCC(=O)Nc4c3)c(Cl)c1"  
XPD  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "c1cc2c(cc1C(=O)N3CCC(CC3)COc4ccc(cc4Cl)F)NC(=O)CO2"  
XPD  SMILES            "OpenEye OEToolkits"  2.0.7  "c1cc2c(cc1C(=O)N3CCC(CC3)COc4ccc(cc4Cl)F)NC(=O)CO2"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
XPD  "SYSTEMATIC NAME"  ACDLabs               12.01  "6-{4-[(2-chloro-4-fluorophenoxy)methyl]piperidine-1-carbonyl}-2H-1,4-benzoxazin-3(4H)-one"  
XPD  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.7  "6-[4-[(2-chloranyl-4-fluoranyl-phenoxy)methyl]piperidin-1-yl]carbonyl-4~{H}-1,4-benzoxazin-3-one"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
XPD  "Create component"  2020-12-23  RCSB  
XPD  "Initial release"   2021-08-11  RCSB  
##
