data_YCD
#

_chem_comp.id                                   YCD
_chem_comp.name                                 "(4~{R})-4-(fluoranylmethyl)-3-[[2-methyl-3-oxidanyl-5-(phosphonooxymethyl)pyridin-4-yl]methylamino]cyclohexene-1-carboxylic acid"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C16 H18 F N2 O7 P"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2021-02-17
_chem_comp.pdbx_modified_date                   2021-08-20
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       400.295
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    ?
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       7LOM
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
YCD  C10  C1   C  0  1  Y  N  N  -6.193  -62.005  -23.836   4.205  -0.433   1.857  C10  YCD   1  
YCD  C11  C2   C  0  1  Y  N  N  -6.514  -60.458  -23.955   4.842  -0.820   0.696  C11  YCD   2  
YCD  C12  C3   C  0  1  Y  N  N  -1.806  -60.193  -28.072  -1.117   3.112  -0.517  C12  YCD   3  
YCD  C13  C4   C  0  1  Y  N  N  -0.786  -59.877  -28.963  -2.376   3.656  -0.309  C13  YCD   4  
YCD  C15  C5   C  0  1  Y  N  N   0.774  -60.889  -27.634  -3.323   1.562  -0.146  C15  YCD   5  
YCD  C16  C6   C  0  1  Y  N  N  -0.184  -61.243  -26.686  -2.102   0.947  -0.347  C16  YCD   6  
YCD  C17  C7   C  0  1  Y  N  N  -1.495  -60.889  -26.914  -0.973   1.729  -0.537  C17  YCD   7  
YCD  C18  C8   C  0  1  N  N  N   0.195  -62.027  -25.408  -1.998  -0.557  -0.360  C18  YCD   8  
YCD  C20  C9   C  0  1  N  N  N  -1.119  -59.112  -30.234  -2.547   5.153  -0.285  C20  YCD   9  
YCD  C21  C10  C  0  1  N  N  N  -4.687  -63.718  -24.753   2.253   0.548   3.076  C21  YCD  10  
YCD  O33  O1   O  0  1  N  N  N  -0.451  -65.778  -24.760  -2.669  -3.329   0.919  O33  YCD  11  
YCD  O34  O2   O  0  1  N  N  N   0.736  -64.078  -23.369  -3.244  -3.353  -1.539  O34  YCD  12  
YCD  O35  O3   O  0  1  N  N  N  -1.722  -63.955  -23.570  -5.092  -2.990   0.296  O35  YCD  13  
YCD  C01  C11  C  0  1  Y  N  N  -6.065  -60.674  -26.527   2.946  -0.064  -0.593  C01  YCD  14  
YCD  C02  C12  C  0  1  Y  N  N  -6.978  -60.109  -25.397   4.216  -0.638  -0.539  C02  YCD  15  
YCD  C03  C13  C  0  1  N  N  N  -7.859  -58.876  -25.702   4.896  -1.052  -1.783  C03  YCD  16  
YCD  C06  C14  C  0  1  Y  N  N  -4.973  -61.649  -26.081   2.312   0.318   0.580  C06  YCD  17  
YCD  C08  C15  C  0  1  Y  N  N  -5.158  -62.454  -24.799   2.944   0.132   1.804  C08  YCD  18  
YCD  C09  C16  C  0  1  N  N  N  -2.630  -61.253  -25.891   0.376   1.095  -0.759  C09  YCD  19  
YCD  F30  F1   F  0  1  N  N  N  -3.636  -64.071  -25.567   1.498  -0.522   3.568  F30  YCD  20  
YCD  N07  N1   N  0  1  N  N  N  -3.848  -61.619  -26.656   1.040   0.894   0.531  N07  YCD  21  
YCD  N14  N2   N  0  1  Y  N  N   0.452  -60.227  -28.725  -3.425   2.876  -0.133  N14  YCD  22  
YCD  O04  O4   O  0  1  N  N  N  -7.901  -58.424  -26.882   4.350  -0.892  -2.856  O04  YCD  23  
YCD  O05  O5   O  0  1  N  N  N  -8.531  -58.313  -24.803   6.122  -1.607  -1.728  O05  YCD  24  
YCD  O19  O6   O  0  1  N  N  N  -3.169  -59.803  -28.345  -0.039   3.919  -0.703  O19  YCD  25  
YCD  O31  O7   O  0  1  N  N  N  -0.274  -63.316  -25.598  -3.291  -1.125  -0.143  O31  YCD  26  
YCD  P32  P1   P  0  1  N  N  N  -0.439  -64.296  -24.309  -3.555  -2.713  -0.095  P32  YCD  27  
YCD  H1   H1   H  0  1  N  N  N  -6.676  -62.663  -23.129   4.691  -0.575   2.811  H1   YCD  28  
YCD  H3   H3   H  0  1  N  N  N  -6.423  -59.746  -23.148   5.826  -1.265   0.743  H3   YCD  29  
YCD  H5   H5   H  0  1  N  N  N   1.805  -61.164  -27.470  -4.206   0.958   0.001  H5   YCD  30  
YCD  H6   H6   H  0  1  N  N  N   1.287  -62.033  -25.273  -1.613  -0.887  -1.325  H6   YCD  31  
YCD  H7   H7   H  0  1  N  N  N  -0.281  -61.573  -24.526  -1.322  -0.881   0.431  H7   YCD  32  
YCD  H8   H8   H  0  1  N  N  N  -0.200  -58.950  -30.816  -2.421   5.517   0.734  H8   YCD  33  
YCD  H9   H9   H  0  1  N  N  N  -1.836  -59.692  -30.834  -1.800   5.614  -0.932  H9   YCD  34  
YCD  H10  H10  H  0  1  N  N  N  -1.563  -58.140  -29.971  -3.545   5.410  -0.642  H10  YCD  35  
YCD  H11  H11  H  0  1  N  N  N  -5.526  -64.383  -25.004   2.999   0.837   3.817  H11  YCD  36  
YCD  H12  H12  H  0  1  N  N  N  -4.368  -63.905  -23.717   1.596   1.394   2.874  H12  YCD  37  
YCD  H13  H13  H  0  1  N  N  N   1.210  -64.894  -23.259  -3.788  -2.995  -2.253  H13  YCD  38  
YCD  H14  H14  H  0  1  N  N  N  -2.280  -64.723  -23.531  -5.322  -3.928   0.344  H14  YCD  39  
YCD  H15  H15  H  0  1  N  N  N  -6.195  -60.394  -27.562   2.456   0.080  -1.545  H15  YCD  40  
YCD  H18  H18  H  0  1  N  N  N  -2.312  -62.103  -25.270   0.249   0.134  -1.256  H18  YCD  41  
YCD  H19  H19  H  0  1  N  N  N  -2.842  -60.387  -25.247   0.986   1.749  -1.383  H19  YCD  42  
YCD  H20  H20  H  0  1  N  N  N  -3.690  -62.534  -27.028   0.597   1.161   1.351  H20  YCD  43  
YCD  H22  H22  H  0  1  N  N  N  -9.004  -57.578  -25.174   6.527  -1.861  -2.568  H22  YCD  44  
YCD  H23  H23  H  0  1  N  N  N  -3.731  -60.097  -27.638   0.124   4.150  -1.628  H23  YCD  45  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
YCD  C20  C13  SING  N  N   1  
YCD  C13  N14  DOUB  Y  N   2  
YCD  C13  C12  SING  Y  N   3  
YCD  N14  C15  SING  Y  N   4  
YCD  O19  C12  SING  N  N   5  
YCD  C12  C17  DOUB  Y  N   6  
YCD  C15  C16  DOUB  Y  N   7  
YCD  C17  C16  SING  Y  N   8  
YCD  C17  C09  SING  N  N   9  
YCD  O04  C03  DOUB  N  N  10  
YCD  C16  C18  SING  N  N  11  
YCD  N07  C06  SING  N  N  12  
YCD  N07  C09  SING  N  N  13  
YCD  C01  C06  SING  Y  N  14  
YCD  C01  C02  DOUB  Y  N  15  
YCD  C06  C08  DOUB  Y  N  16  
YCD  C03  C02  SING  N  N  17  
YCD  C03  O05  SING  N  N  18  
YCD  O31  C18  SING  N  N  19  
YCD  O31  P32  SING  N  N  20  
YCD  F30  C21  SING  N  N  21  
YCD  C02  C11  SING  Y  N  22  
YCD  C08  C21  SING  N  N  23  
YCD  C08  C10  SING  Y  N  24  
YCD  O33  P32  DOUB  N  N  25  
YCD  P32  O35  SING  N  N  26  
YCD  P32  O34  SING  N  N  27  
YCD  C11  C10  DOUB  Y  N  28  
YCD  C10  H1   SING  N  N  29  
YCD  C11  H3   SING  N  N  30  
YCD  C15  H5   SING  N  N  31  
YCD  C18  H6   SING  N  N  32  
YCD  C18  H7   SING  N  N  33  
YCD  C20  H8   SING  N  N  34  
YCD  C20  H9   SING  N  N  35  
YCD  C20  H10  SING  N  N  36  
YCD  C21  H11  SING  N  N  37  
YCD  C21  H12  SING  N  N  38  
YCD  O34  H13  SING  N  N  39  
YCD  O35  H14  SING  N  N  40  
YCD  C01  H15  SING  N  N  41  
YCD  C09  H18  SING  N  N  42  
YCD  C09  H19  SING  N  N  43  
YCD  N07  H20  SING  N  N  44  
YCD  O05  H22  SING  N  N  45  
YCD  O19  H23  SING  N  N  46  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
YCD  SMILES            ACDLabs               12.01  "Oc1c(CNc2cc(ccc2CF)C(=O)O)c(cnc1C)COP(=O)(O)O"  
YCD  InChI             InChI                 1.03   "InChI=1S/C16H18FN2O7P/c1-9-15(20)13(12(6-18-9)8-26-27(23,24)25)7-19-14-4-10(16(21)22)2-3-11(14)5-17/h2-4,6,19-20H,5,7-8H2,1H3,(H,21,22)(H2,23,24,25)"  
YCD  InChIKey          InChI                 1.03   MGRVCHMHEIIJND-UHFFFAOYSA-N  
YCD  SMILES_CANONICAL  CACTVS                3.385  "Cc1ncc(CO[P](O)(O)=O)c(CNc2cc(ccc2CF)C(O)=O)c1O"  
YCD  SMILES            CACTVS                3.385  "Cc1ncc(CO[P](O)(O)=O)c(CNc2cc(ccc2CF)C(O)=O)c1O"  
YCD  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "Cc1c(c(c(cn1)COP(=O)(O)O)CNc2cc(ccc2CF)C(=O)O)O"  
YCD  SMILES            "OpenEye OEToolkits"  2.0.7  "Cc1c(c(c(cn1)COP(=O)(O)O)CNc2cc(ccc2CF)C(=O)O)O"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
YCD  "SYSTEMATIC NAME"  ACDLabs               12.01  "4-(fluoromethyl)-3-[({3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4-yl}methyl)amino]benzoic acid"  
YCD  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.7  "4-(fluoranylmethyl)-3-[[2-methyl-3-oxidanyl-5-(phosphonooxymethyl)pyridin-4-yl]methylamino]benzoic acid"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
YCD  "Create component"    2021-02-17  RCSB  
YCD  "Modify value order"  2021-08-18  RCSB  
YCD  "Initial release"     2021-08-25  RCSB  
##
