data_ZGD
#

_chem_comp.id                                   ZGD
_chem_comp.name                                 "N-(3,5-dichloro-4-{[6-(methylamino)pyrimidin-4-yl]oxy}phenyl)-N'-[3-(trifluoromethyl)phenyl]urea"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C19 H14 Cl2 F3 N5 O2"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2021-04-19
_chem_comp.pdbx_modified_date                   2021-11-05
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       472.248
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    ZGD
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       7MGK
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
ZGD  C01   C1   C   0  1  N  N  N    0.356  38.159  -12.585   8.183   1.831   0.695  C01   ZGD   1  
ZGD  N05   N1   N   0  1  N  N  N   -0.505  38.482  -11.444   7.208   2.540  -0.139  N05   ZGD   2  
ZGD  C07   C2   C   0  1  Y  N  N   -1.848  38.032  -11.468   5.938   2.015  -0.317  C07   ZGD   3  
ZGD  C08   C3   C   0  1  Y  N  N   -2.340  37.295  -12.563   5.575   0.818   0.295  C08   ZGD   4  
ZGD  C10   C4   C   0  1  Y  N  N   -3.686  36.885  -12.513   4.290   0.335   0.084  C10   ZGD   5  
ZGD  O11   O1   O   0  1  N  N  N   -4.249  36.155  -13.534   3.889  -0.826   0.659  O11   ZGD   6  
ZGD  C12   C5   C   0  1  Y  N  N   -5.313  35.312  -13.270   2.620  -1.253   0.419  C12   ZGD   7  
ZGD  C13   C6   C   0  1  Y  N  N   -6.633  35.615  -13.649   1.585  -0.856   1.255  C13   ZGD   8  
ZGD  CL14  CL1  CL  0  0  N  N  N   -7.039  37.096  -14.467   1.911   0.184   2.606  CL14  ZGD   9  
ZGD  C15   C7   C   0  1  Y  N  N   -7.676  34.725  -13.371   0.296  -1.289   1.011  C15   ZGD  10  
ZGD  C17   C8   C   0  1  Y  N  N   -7.438  33.520  -12.712   0.036  -2.121  -0.070  C17   ZGD  11  
ZGD  N18   N2   N   0  1  N  N  N   -8.547  32.663  -12.475  -1.272  -2.560  -0.318  N18   ZGD  12  
ZGD  C20   C9   C   0  1  N  N  N   -8.545  31.520  -11.785  -2.317  -1.761  -0.025  C20   ZGD  13  
ZGD  O21   O2   O   0  1  N  N  N   -7.512  31.073  -11.237  -2.125  -0.626   0.364  O21   ZGD  14  
ZGD  N22   N3   N   0  1  N  N  N   -9.705  30.866  -11.691  -3.576  -2.222  -0.165  N22   ZGD  15  
ZGD  C24   C10  C   0  1  Y  N  N   -9.854  29.639  -10.999  -4.662  -1.361   0.033  C24   ZGD  16  
ZGD  C25   C11  C   0  1  Y  N  N  -10.662  28.644  -11.553  -5.846  -1.848   0.570  C25   ZGD  17  
ZGD  C27   C12  C   0  1  Y  N  N  -10.825  27.421  -10.891  -6.916  -0.996   0.764  C27   ZGD  18  
ZGD  C29   C13  C   0  1  Y  N  N  -10.187  27.185   -9.671  -6.808   0.340   0.425  C29   ZGD  19  
ZGD  C31   C14  C   0  1  Y  N  N   -9.387  28.185   -9.122  -5.630   0.828  -0.109  C31   ZGD  20  
ZGD  C32   C15  C   0  1  Y  N  N   -9.221  29.406   -9.774  -4.555  -0.017  -0.300  C32   ZGD  21  
ZGD  C34   C16  C   0  1  N  N  N   -8.690  27.937   -7.818  -5.517   2.285  -0.477  C34   ZGD  22  
ZGD  F35   F1   F   0  1  N  N  N   -9.522  27.267   -7.030  -5.240   2.401  -1.844  F35   ZGD  23  
ZGD  F36   F2   F   0  1  N  N  N   -8.336  29.094   -7.250  -6.722   2.934  -0.189  F36   ZGD  24  
ZGD  F37   F3   F   0  1  N  N  N   -7.611  27.202   -8.066  -4.483   2.873   0.259  F37   ZGD  25  
ZGD  C38   C17  C   0  1  Y  N  N   -6.127  33.213  -12.343   1.071  -2.517  -0.906  C38   ZGD  26  
ZGD  C40   C18  C   0  1  Y  N  N   -5.085  34.097  -12.618   2.360  -2.080  -0.665  C40   ZGD  27  
ZGD  CL41  CL2  CL  0  0  N  N  N   -3.482  33.654  -12.127   3.653  -2.570  -1.714  CL41  ZGD  28  
ZGD  N42   N4   N   0  1  Y  N  N   -4.432  37.202  -11.439   3.457   1.027  -0.689  N42   ZGD  29  
ZGD  C43   C19  C   0  1  Y  N  N   -3.933  37.910  -10.415   3.837   2.156  -1.251  C43   ZGD  30  
ZGD  N45   N5   N   0  1  Y  N  N   -2.656  38.316  -10.430   5.045   2.651  -1.072  N45   ZGD  31  
ZGD  H1    H1   H   0  1  N  N  N    1.360  38.575  -12.417   7.793   1.734   1.708  H1    ZGD  32  
ZGD  H2    H2   H   0  1  N  N  N    0.425  37.067  -12.694   8.363   0.839   0.279  H2    ZGD  33  
ZGD  H3    H3   H   0  1  N  N  N   -0.071  38.593  -13.501   9.118   2.391   0.717  H3    ZGD  34  
ZGD  H4    H4   H   0  1  N  N  N   -0.076  38.091  -10.629   7.452   3.376  -0.565  H4    ZGD  35  
ZGD  H5    H5   H   0  1  N  N  N   -1.710  37.054  -13.407   6.274   0.280   0.917  H5    ZGD  36  
ZGD  H6    H6   H   0  1  N  N  N   -8.682  34.976  -13.672  -0.509  -0.982   1.661  H6    ZGD  37  
ZGD  H7    H7   H   0  1  N  N  N   -9.422  32.946  -12.867  -1.424  -3.439  -0.699  H7    ZGD  38  
ZGD  H8    H8   H   0  1  N  N  N  -10.510  31.263  -12.132  -3.730  -3.149  -0.403  H8    ZGD  39  
ZGD  H9    H9   H   0  1  N  N  N  -11.162  28.818  -12.494  -5.932  -2.891   0.834  H9    ZGD  40  
ZGD  H10   H10  H   0  1  N  N  N  -11.449  26.654  -11.327  -7.838  -1.374   1.181  H10   ZGD  41  
ZGD  H11   H11  H   0  1  N  N  N  -10.312  26.241   -9.161  -7.646   1.004   0.578  H11   ZGD  42  
ZGD  H12   H12  H   0  1  N  N  N   -8.602  30.173   -9.332  -3.633   0.366  -0.713  H12   ZGD  43  
ZGD  H13   H13  H   0  1  N  N  N   -5.918  32.281  -11.839   0.869  -3.164  -1.747  H13   ZGD  44  
ZGD  H14   H14  H   0  1  N  N  N   -4.564  38.154   -9.573   3.136   2.694  -1.873  H14   ZGD  45  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
ZGD  CL14  C13   SING  N  N   1  
ZGD  C13   C15   DOUB  Y  N   2  
ZGD  C13   C12   SING  Y  N   3  
ZGD  O11   C12   SING  N  N   4  
ZGD  O11   C10   SING  N  N   5  
ZGD  C15   C17   SING  Y  N   6  
ZGD  C12   C40   DOUB  Y  N   7  
ZGD  C17   N18   SING  N  N   8  
ZGD  C17   C38   DOUB  Y  N   9  
ZGD  C40   C38   SING  Y  N  10  
ZGD  C40   CL41  SING  N  N  11  
ZGD  C01   N05   SING  N  N  12  
ZGD  C08   C10   DOUB  Y  N  13  
ZGD  C08   C07   SING  Y  N  14  
ZGD  C10   N42   SING  Y  N  15  
ZGD  N18   C20   SING  N  N  16  
ZGD  C20   N22   SING  N  N  17  
ZGD  C20   O21   DOUB  N  N  18  
ZGD  N22   C24   SING  N  N  19  
ZGD  C25   C24   DOUB  Y  N  20  
ZGD  C25   C27   SING  Y  N  21  
ZGD  C07   N05   SING  N  N  22  
ZGD  C07   N45   DOUB  Y  N  23  
ZGD  N42   C43   DOUB  Y  N  24  
ZGD  C24   C32   SING  Y  N  25  
ZGD  C27   C29   DOUB  Y  N  26  
ZGD  N45   C43   SING  Y  N  27  
ZGD  C32   C31   DOUB  Y  N  28  
ZGD  C29   C31   SING  Y  N  29  
ZGD  C31   C34   SING  N  N  30  
ZGD  F37   C34   SING  N  N  31  
ZGD  C34   F36   SING  N  N  32  
ZGD  C34   F35   SING  N  N  33  
ZGD  C01   H1    SING  N  N  34  
ZGD  C01   H2    SING  N  N  35  
ZGD  C01   H3    SING  N  N  36  
ZGD  N05   H4    SING  N  N  37  
ZGD  C08   H5    SING  N  N  38  
ZGD  C15   H6    SING  N  N  39  
ZGD  N18   H7    SING  N  N  40  
ZGD  N22   H8    SING  N  N  41  
ZGD  C25   H9    SING  N  N  42  
ZGD  C27   H10   SING  N  N  43  
ZGD  C29   H11   SING  N  N  44  
ZGD  C32   H12   SING  N  N  45  
ZGD  C38   H13   SING  N  N  46  
ZGD  C43   H14   SING  N  N  47  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
ZGD  SMILES            ACDLabs               12.01  "CNc1cc(Oc2c(Cl)cc(NC(=O)Nc3cc(ccc3)C(F)(F)F)cc2Cl)ncn1"  
ZGD  InChI             InChI                 1.03   "InChI=1S/C19H14Cl2F3N5O2/c1-25-15-8-16(27-9-26-15)31-17-13(20)6-12(7-14(17)21)29-18(30)28-11-4-2-3-10(5-11)19(22,23)24/h2-9H,1H3,(H,25,26,27)(H2,28,29,30)"  
ZGD  InChIKey          InChI                 1.03   QOQADIYOLOHRAW-UHFFFAOYSA-N  
ZGD  SMILES_CANONICAL  CACTVS                3.385  "CNc1cc(Oc2c(Cl)cc(NC(=O)Nc3cccc(c3)C(F)(F)F)cc2Cl)ncn1"  
ZGD  SMILES            CACTVS                3.385  "CNc1cc(Oc2c(Cl)cc(NC(=O)Nc3cccc(c3)C(F)(F)F)cc2Cl)ncn1"  
ZGD  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "CNc1cc(ncn1)Oc2c(cc(cc2Cl)NC(=O)Nc3cccc(c3)C(F)(F)F)Cl"  
ZGD  SMILES            "OpenEye OEToolkits"  2.0.7  "CNc1cc(ncn1)Oc2c(cc(cc2Cl)NC(=O)Nc3cccc(c3)C(F)(F)F)Cl"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
ZGD  "SYSTEMATIC NAME"  ACDLabs               12.01  "N-(3,5-dichloro-4-{[6-(methylamino)pyrimidin-4-yl]oxy}phenyl)-N'-[3-(trifluoromethyl)phenyl]urea"  
ZGD  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.7  "1-[3,5-bis(chloranyl)-4-[6-(methylamino)pyrimidin-4-yl]oxy-phenyl]-3-[3-(trifluoromethyl)phenyl]urea"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
ZGD  "Create component"  2021-04-19  RCSB  
ZGD  "Initial release"   2021-11-10  RCSB  
##
