data_2FE
#

_chem_comp.id                                   2FE
_chem_comp.name                                 "2'-fluoro-2'-deoxy-1,N6-ethenoadenine"
_chem_comp.type                                 "DNA linking"
_chem_comp.pdbx_type                            ATOMN
_chem_comp.formula                              "C12 H13 F N5 O6 P"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "3-(2-deoxy-2-fluoro-5-O-phosphono-beta-D-arabinofuranosyl)-3H-imidazo[2,1-i]purine"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2008-04-28
_chem_comp.pdbx_modified_date                   2020-06-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       373.234
_chem_comp.one_letter_code                      N
_chem_comp.three_letter_code                    2FE
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       3CWU
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
2FE  O3P     O3P     O  0  1  N  Y  N  35.652   -8.749   6.381  -5.547   2.302  -1.204  O3P     2FE   1  
2FE  P       P       P  0  1  N  N  N  36.393   -9.973   5.655  -5.277   1.117  -0.147  P       2FE   2  
2FE  O1P     O1P     O  0  1  N  N  N  36.481   -9.681   4.203  -5.167   1.686   1.215  O1P     2FE   3  
2FE  O2P     O2P     O  0  1  N  N  N  35.773  -11.245   6.085  -6.497   0.068  -0.194  O2P     2FE   4  
2FE  "O5'"   "O5'"   O  0  1  N  N  N  37.850   -9.879   6.298  -3.905   0.363  -0.525  "O5'"   2FE   5  
2FE  "F1'"   "F1'"   F  0  1  N  N  N  37.371  -13.671   6.562   0.628  -1.849   1.654  "F1'"   2FE   6  
2FE  N9      N9      N  0  1  Y  N  N  36.172  -13.247   9.156   1.321   0.031  -0.014  N9      2FE   7  
2FE  C8      C8      C  0  1  Y  N  N  35.056  -13.049   8.372   1.213   1.082   0.845  C8      2FE   8  
2FE  N7      N7      N  0  1  Y  N  N  33.929  -13.459   8.901   2.391   1.598   1.059  N7      2FE   9  
2FE  C5      C5      C  0  1  Y  N  N  34.301  -13.958  10.123   3.316   0.912   0.355  C5      2FE  10  
2FE  C4      C4      C  0  1  Y  N  N  35.689  -13.844  10.319   2.648  -0.099  -0.341  C4      2FE  11  
2FE  N3      N3      N  0  1  Y  N  N  36.392  -14.249  11.435   3.340  -0.935  -1.127  N3      2FE  12  
2FE  C2      C2      C  0  1  Y  N  N  35.569  -14.798  12.375   4.629  -0.847  -1.274  C2      2FE  13  
2FE  N1      N1      N  0  1  Y  N  N  34.214  -14.967  12.309   5.376   0.101  -0.642  N1      2FE  14  
2FE  C6      C6      C  0  1  Y  N  N  33.546  -14.564  11.180   4.766   1.011   0.189  C6      2FE  15  
2FE  C10     C10     C  0  1  Y  N  N  33.266  -15.487  13.134   6.714   0.395  -0.633  C10     2FE  16  
2FE  C11     C11     C  0  1  Y  N  N  32.106  -15.356  12.455   6.884   1.454   0.185  C11     2FE  17  
2FE  N6      N6      N  0  1  Y  N  N  32.262  -14.760  11.199   5.691   1.813   0.674  N6      2FE  18  
2FE  "C2'"   "C2'"   C  0  1  N  N  S  38.147  -13.683   7.677   0.092  -2.077   0.382  "C2'"   2FE  19  
2FE  "C5'"   "C5'"   C  0  1  N  N  N  38.698  -10.949   6.257  -3.336  -0.669   0.283  "C5'"   2FE  20  
2FE  "C4'"   "C4'"   C  0  1  N  N  R  38.954  -11.487   7.641  -2.041  -1.166  -0.362  "C4'"   2FE  21  
2FE  "O4'"   "O4'"   O  0  1  N  N  N  37.751  -11.548   8.464  -1.039  -0.126  -0.345  "O4'"   2FE  22  
2FE  "C1'"   "C1'"   C  0  1  N  N  R  37.592  -12.911   8.858   0.223  -0.812  -0.495  "C1'"   2FE  23  
2FE  "C3'"   "C3'"   C  0  1  N  N  R  39.410  -12.888   7.420  -1.432  -2.315   0.471  "C3'"   2FE  24  
2FE  "O3'"   "O3'"   O  0  1  N  N  N  40.514  -13.321   8.182  -1.774  -3.581  -0.096  "O3'"   2FE  25  
2FE  HO3P    HO3P    H  0  0  N  Y  N  35.506   -8.964   7.295  -6.358   2.800  -1.037  HO3P    2FE  26  
2FE  HO2P    HO2P    H  0  0  N  N  N  35.640  -11.805   5.329  -6.627  -0.345  -1.059  HO2P    2FE  27  
2FE  H8      H8      H  0  1  N  N  N  35.106  -12.591   7.395   0.291   1.435   1.282  H8      2FE  28  
2FE  H2      H2      H  0  1  N  N  N  36.046  -15.141  13.281   5.127  -1.553  -1.922  H2      2FE  29  
2FE  H10     H10     H  0  1  N  N  N  33.409  -15.912  14.117   7.488  -0.124  -1.179  H10     2FE  30  
2FE  H11     H11     H  0  1  N  N  N  31.152  -15.680  12.843   7.826   1.932   0.409  H11     2FE  31  
2FE  "H2'"   "H2'"   H  0  1  N  N  N  38.253  -14.756   7.895   0.586  -2.924  -0.094  "H2'"   2FE  32  
2FE  "H5'"   "H5'"   H  0  1  N  N  N  38.245  -11.741   5.643  -3.119  -0.275   1.276  "H5'"   2FE  33  
2FE  "H5'A"  "H5'A"  H  0  0  N  N  N  39.655  -10.623   5.824  -4.042  -1.496   0.366  "H5'A"  2FE  34  
2FE  "H4'"   "H4'"   H  0  1  N  N  N  39.670  -10.836   8.164  -2.229  -1.495  -1.384  "H4'"   2FE  35  
2FE  "H1'"   "H1'"   H  0  1  N  N  N  38.114  -13.152   9.796   0.384  -1.087  -1.537  "H1'"   2FE  36  
2FE  "H3'"   "H3'"   H  0  1  N  N  N  39.829  -13.015   6.411  -1.768  -2.256   1.506  "H3'"   2FE  37  
2FE  "HO3'"  "HO3'"  H  0  0  N  N  N  41.271  -13.418   7.616  -1.369  -4.336   0.352  "HO3'"  2FE  38  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
2FE  P      O3P     SING  N  N   1  
2FE  O3P    HO3P    SING  N  N   2  
2FE  O1P    P       DOUB  N  N   3  
2FE  P      O2P     SING  N  N   4  
2FE  P      "O5'"   SING  N  N   5  
2FE  O2P    HO2P    SING  N  N   6  
2FE  "C5'"  "O5'"   SING  N  N   7  
2FE  "F1'"  "C2'"   SING  N  N   8  
2FE  C8     N9      SING  Y  N   9  
2FE  "C1'"  N9      SING  N  N  10  
2FE  N9     C4      SING  Y  N  11  
2FE  C8     N7      DOUB  Y  N  12  
2FE  C8     H8      SING  N  N  13  
2FE  N7     C5      SING  Y  N  14  
2FE  C5     C4      DOUB  Y  N  15  
2FE  C5     C6      SING  Y  N  16  
2FE  C4     N3      SING  Y  N  17  
2FE  N3     C2      DOUB  Y  N  18  
2FE  N1     C2      SING  Y  N  19  
2FE  C2     H2      SING  N  N  20  
2FE  C6     N1      SING  Y  N  21  
2FE  N1     C10     SING  Y  N  22  
2FE  C6     N6      DOUB  Y  N  23  
2FE  C11    C10     DOUB  Y  N  24  
2FE  C10    H10     SING  N  N  25  
2FE  N6     C11     SING  Y  N  26  
2FE  C11    H11     SING  N  N  27  
2FE  "C3'"  "C2'"   SING  N  N  28  
2FE  "C2'"  "C1'"   SING  N  N  29  
2FE  "C2'"  "H2'"   SING  N  N  30  
2FE  "C5'"  "C4'"   SING  N  N  31  
2FE  "C5'"  "H5'"   SING  N  N  32  
2FE  "C5'"  "H5'A"  SING  N  N  33  
2FE  "C3'"  "C4'"   SING  N  N  34  
2FE  "C4'"  "O4'"   SING  N  N  35  
2FE  "C4'"  "H4'"   SING  N  N  36  
2FE  "O4'"  "C1'"   SING  N  N  37  
2FE  "C1'"  "H1'"   SING  N  N  38  
2FE  "C3'"  "O3'"   SING  N  N  39  
2FE  "C3'"  "H3'"   SING  N  N  40  
2FE  "O3'"  "HO3'"  SING  N  N  41  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
2FE  SMILES            ACDLabs               10.04  "O=P(O)(O)OCC4OC(n3cnc1c3ncn2ccnc12)C(F)C4O"  
2FE  SMILES_CANONICAL  CACTVS                3.341  "O[C@H]1[C@H](F)[C@@H](O[C@@H]1CO[P](O)(O)=O)n2cnc3c4nccn4cnc23"  
2FE  SMILES            CACTVS                3.341  "O[CH]1[CH](F)[CH](O[CH]1CO[P](O)(O)=O)n2cnc3c4nccn4cnc23"  
2FE  SMILES_CANONICAL  "OpenEye OEToolkits"  1.5.0  "c1cn2cnc3c(c2n1)ncn3[C@H]4[C@H]([C@@H]([C@H](O4)COP(=O)(O)O)O)F"  
2FE  SMILES            "OpenEye OEToolkits"  1.5.0  "c1cn2cnc3c(c2n1)ncn3C4C(C(C(O4)COP(=O)(O)O)O)F"  
2FE  InChI             InChI                 1.03   "InChI=1S/C12H13FN5O6P/c13-7-9(19)6(3-23-25(20,21)22)24-12(7)18-5-15-8-10-14-1-2-17(10)4-16-11(8)18/h1-2,4-7,9,12,19H,3H2,(H2,20,21,22)/t6-,7+,9-,12-/m1/s1"  
2FE  InChIKey          InChI                 1.03   SHSHKRQJDKZKDR-MCOZSMFQSA-N  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
2FE  "SYSTEMATIC NAME"  ACDLabs               10.04  "3-(2-deoxy-2-fluoro-5-O-phosphono-beta-D-arabinofuranosyl)-3H-imidazo[2,1-i]purine"  
2FE  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.5.0  "[(2R,3R,4S,5R)-4-fluoro-3-hydroxy-5-imidazo[2,1-f]purin-3-yl-oxolan-2-yl]methyl dihydrogen phosphate"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
2FE  "Create component"      2008-04-28  RCSB  
2FE  "Modify aromatic_flag"  2011-06-04  RCSB  
2FE  "Modify descriptor"     2011-06-04  RCSB  
2FE  "Modify synonyms"       2020-06-05  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     2FE
_pdbx_chem_comp_synonyms.name        "3-(2-deoxy-2-fluoro-5-O-phosphono-beta-D-arabinofuranosyl)-3H-imidazo[2,1-i]purine"
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
