data_8LE
#

_chem_comp.id                                   8LE
_chem_comp.name                                 "[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] 2-methyl-2-oxidanyl-propanoate"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C14 H20 N5 O9 P"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2017-02-09
_chem_comp.pdbx_modified_date                   2019-08-23
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       433.310
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    8LE
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       5N43
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 EBI
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
8LE  C2     C1   C  0  1  Y  N  N  -13.618  -40.207  12.730   6.436   0.769  -1.537  C2     8LE   1  
8LE  CAA    C2   C  0  1  N  N  N  -20.747  -39.334   5.235  -5.660   3.263  -0.231  CAA    8LE   2  
8LE  CAZ    C3   C  0  1  N  N  N  -19.660  -39.163   6.312  -6.107   1.884  -0.720  CAZ    8LE   3  
8LE  CAB    C4   C  0  1  N  N  N  -19.567  -40.434   7.177  -7.610   1.720  -0.483  CAB    8LE   4  
8LE  OAF    O1   O  0  1  N  N  N  -20.023  -38.090   7.170  -5.829   1.760  -2.117  OAF    8LE   5  
8LE  CAS    C5   C  0  1  N  N  N  -18.301  -38.834   5.642  -5.360   0.816   0.037  CAS    8LE   6  
8LE  OAD    O2   O  0  1  N  N  N  -17.678  -37.820   5.948  -5.856   0.310   1.016  OAD    8LE   7  
8LE  OAQ    O3   O  0  1  N  N  N  -17.880  -39.720   4.692  -4.144   0.426  -0.377  OAQ    8LE   8  
8LE  PBC    P1   P  0  1  N  N  N  -16.677  -39.481   3.596  -3.411  -0.719   0.485  PBC    8LE   9  
8LE  OAI    O4   O  0  1  N  N  N  -16.857  -38.043   2.935  -4.249  -2.090   0.378  OAI    8LE  10  
8LE  OAE    O5   O  0  1  N  N  N  -16.661  -40.594   2.619  -3.335  -0.298   1.902  OAE    8LE  11  
8LE  "O5'"  O6   O  0  1  N  N  N  -15.336  -39.476   4.426  -1.925  -0.953  -0.086  "O5'"  8LE  12  
8LE  "C5'"  C6   C  0  1  N  N  N  -15.118  -40.613   5.251  -0.983  -1.833   0.531  "C5'"  8LE  13  
8LE  "C4'"  C7   C  0  1  N  N  R  -13.883  -40.386   6.080   0.324  -1.819  -0.264  "C4'"  8LE  14  
8LE  "O4'"  O7   O  0  1  N  N  N  -14.154  -39.315   7.018   0.992  -0.548  -0.112  "O4'"  8LE  15  
8LE  "C3'"  C8   C  0  1  N  N  S  -13.703  -41.605   6.896   1.314  -2.856   0.311  "C3'"  8LE  16  
8LE  "O3'"  O8   O  0  1  N  N  N  -12.900  -42.541   6.169   1.281  -4.060  -0.458  "O3'"  8LE  17  
8LE  "C2'"  C9   C  0  1  N  N  R  -12.983  -41.044   8.123   2.693  -2.170   0.183  "C2'"  8LE  18  
8LE  "O2'"  O9   O  0  1  N  N  N  -11.569  -40.778   7.879   3.553  -2.930  -0.668  "O2'"  8LE  19  
8LE  "C1'"  C10  C  0  1  N  N  R  -13.704  -39.731   8.326   2.373  -0.800  -0.454  "C1'"  8LE  20  
8LE  N9     N1   N  0  1  Y  N  N  -14.842  -39.862   9.291   3.236   0.240   0.112  N9     8LE  21  
8LE  C8     C11  C  0  1  Y  N  N  -16.155  -39.876   9.035   2.952   1.026   1.188  C8     8LE  22  
8LE  N7     N2   N  0  1  Y  N  N  -16.799  -40.012  10.189   3.941   1.841   1.417  N7     8LE  23  
8LE  C5     C12  C  0  1  Y  N  N  -15.892  -40.101  11.168   4.920   1.629   0.505  C5     8LE  24  
8LE  C4     C13  C  0  1  Y  N  N  -14.674  -40.010  10.603   4.479   0.599  -0.344  C4     8LE  25  
8LE  N3     N3   N  0  1  Y  N  N  -13.544  -40.041  11.348   5.261   0.209  -1.345  N3     8LE  26  
8LE  N1     N4   N  0  1  Y  N  N  -14.895  -40.299  13.290   6.897   1.733  -0.760  N1     8LE  27  
8LE  C6     C14  C  0  1  Y  N  N  -15.987  -40.224  12.506   6.185   2.193   0.263  C6     8LE  28  
8LE  N6     N5   N  0  1  N  N  N  -17.198  -40.294  13.044   6.671   3.210   1.065  N6     8LE  29  
8LE  H1     H1   H  0  1  N  N  N  -12.729  -40.262  13.340   7.048   0.426  -2.358  H1     8LE  30  
8LE  H2     H2   H  0  1  N  N  N  -21.708  -39.567   5.717  -6.201   4.035  -0.779  H2     8LE  31  
8LE  H3     H3   H  0  1  N  N  N  -20.842  -38.402   4.659  -5.872   3.357   0.834  H3     8LE  32  
8LE  H4     H4   H  0  1  N  N  N  -20.467  -40.155   4.559  -4.590   3.379  -0.400  H4     8LE  33  
8LE  H5     H5   H  0  1  N  N  N  -18.788  -40.301   7.942  -8.150   2.493  -1.031  H5     8LE  34  
8LE  H6     H6   H  0  1  N  N  N  -20.535  -40.616   7.667  -7.928   0.738  -0.832  H6     8LE  35  
8LE  H7     H7   H  0  1  N  N  N  -19.312  -41.293   6.540  -7.822   1.814   0.582  H7     8LE  36  
8LE  H8     H8   H  0  1  N  N  N  -19.338  -37.431   7.161  -6.087   0.909  -2.495  H8     8LE  37  
8LE  H9     H9   H  0  1  N  N  N  -16.927  -38.134   1.992  -4.340  -2.426  -0.524  H9     8LE  38  
8LE  H10    H10  H  0  1  N  N  N  -15.984  -40.760   5.912  -0.791  -1.501   1.551  H10    8LE  39  
8LE  H11    H11  H  0  1  N  N  N  -14.981  -41.505   4.622  -1.388  -2.845   0.547  H11    8LE  40  
8LE  H12    H12  H  0  1  N  N  N  -13.005  -40.180   5.450   0.130  -2.024  -1.317  H12    8LE  41  
8LE  H13    H13  H  0  1  N  N  N  -14.673  -42.036   7.185   1.086  -3.063   1.356  H13    8LE  42  
8LE  H14    H14  H  0  1  N  N  N  -12.781  -43.327   6.689   1.884  -4.747  -0.141  H14    8LE  43  
8LE  H15    H15  H  0  1  N  N  N  -13.126  -41.706   8.990   3.146  -2.038   1.166  H15    8LE  44  
8LE  H16    H16  H  0  1  N  N  N  -11.170  -40.433   8.669   3.739  -3.822  -0.345  H16    8LE  45  
8LE  H17    H17  H  0  1  N  N  N  -12.988  -38.994   8.720   2.494  -0.847  -1.536  H17    8LE  46  
8LE  H18    H18  H  0  1  N  N  N  -16.612  -39.791   8.060   2.041   0.981   1.766  H18    8LE  47  
8LE  H19    H19  H  0  1  N  N  N  -17.117  -40.401  14.035   6.138   3.542   1.804  H19    8LE  48  
8LE  H20    H20  H  0  1  N  N  N  -17.702  -39.455  12.839   7.546   3.591   0.888  H20    8LE  49  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
8LE  OAE    PBC    DOUB  N  N   1  
8LE  OAI    PBC    SING  N  N   2  
8LE  PBC    "O5'"  SING  N  N   3  
8LE  PBC    OAQ    SING  N  N   4  
8LE  "O5'"  "C5'"  SING  N  N   5  
8LE  OAQ    CAS    SING  N  N   6  
8LE  CAA    CAZ    SING  N  N   7  
8LE  "C5'"  "C4'"  SING  N  N   8  
8LE  CAS    OAD    DOUB  N  N   9  
8LE  CAS    CAZ    SING  N  N  10  
8LE  "C4'"  "C3'"  SING  N  N  11  
8LE  "C4'"  "O4'"  SING  N  N  12  
8LE  "O3'"  "C3'"  SING  N  N  13  
8LE  CAZ    OAF    SING  N  N  14  
8LE  CAZ    CAB    SING  N  N  15  
8LE  "C3'"  "C2'"  SING  N  N  16  
8LE  "O4'"  "C1'"  SING  N  N  17  
8LE  "O2'"  "C2'"  SING  N  N  18  
8LE  "C2'"  "C1'"  SING  N  N  19  
8LE  "C1'"  N9     SING  N  N  20  
8LE  C8     N9     SING  Y  N  21  
8LE  C8     N7     DOUB  Y  N  22  
8LE  N9     C4     SING  Y  N  23  
8LE  N7     C5     SING  Y  N  24  
8LE  C4     C5     DOUB  Y  N  25  
8LE  C4     N3     SING  Y  N  26  
8LE  C5     C6     SING  Y  N  27  
8LE  N3     C2     DOUB  Y  N  28  
8LE  C6     N6     SING  N  N  29  
8LE  C6     N1     DOUB  Y  N  30  
8LE  C2     N1     SING  Y  N  31  
8LE  C2     H1     SING  N  N  32  
8LE  CAA    H2     SING  N  N  33  
8LE  CAA    H3     SING  N  N  34  
8LE  CAA    H4     SING  N  N  35  
8LE  CAB    H5     SING  N  N  36  
8LE  CAB    H6     SING  N  N  37  
8LE  CAB    H7     SING  N  N  38  
8LE  OAF    H8     SING  N  N  39  
8LE  OAI    H9     SING  N  N  40  
8LE  "C5'"  H10    SING  N  N  41  
8LE  "C5'"  H11    SING  N  N  42  
8LE  "C4'"  H12    SING  N  N  43  
8LE  "C3'"  H13    SING  N  N  44  
8LE  "O3'"  H14    SING  N  N  45  
8LE  "C2'"  H15    SING  N  N  46  
8LE  "O2'"  H16    SING  N  N  47  
8LE  "C1'"  H17    SING  N  N  48  
8LE  C8     H18    SING  N  N  49  
8LE  N6     H19    SING  N  N  50  
8LE  N6     H20    SING  N  N  51  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
8LE  InChI             InChI                 1.03   "InChI=1S/C14H20N5O9P/c1-14(2,23)13(22)28-29(24,25)26-3-6-8(20)9(21)12(27-6)19-5-18-7-10(15)16-4-17-11(7)19/h4-6,8-9,12,20-21,23H,3H2,1-2H3,(H,24,25)(H2,15,16,17)/t6-,8-,9-,12-/m1/s1"  
8LE  InChIKey          InChI                 1.03   WJCYMTFWIDDQPQ-WOUKDFQISA-N  
8LE  SMILES_CANONICAL  CACTVS                3.385  "CC(C)(O)C(=O)O[P](O)(=O)OC[C@H]1O[C@H]([C@H](O)[C@@H]1O)n2cnc3c(N)ncnc23"  
8LE  SMILES            CACTVS                3.385  "CC(C)(O)C(=O)O[P](O)(=O)OC[CH]1O[CH]([CH](O)[CH]1O)n2cnc3c(N)ncnc23"  
8LE  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.6  "CC(C)(C(=O)OP(=O)(O)OC[C@@H]1[C@H]([C@H]([C@@H](O1)n2cnc3c2ncnc3N)O)O)O"  
8LE  SMILES            "OpenEye OEToolkits"  2.0.6  "CC(C)(C(=O)OP(=O)(O)OCC1C(C(C(O1)n2cnc3c2ncnc3N)O)O)O"  
#
_pdbx_chem_comp_identifier.comp_id          8LE
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.6
_pdbx_chem_comp_identifier.identifier       "[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] 2-methyl-2-oxidanyl-propanoate"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
8LE  "Create component"  2017-02-09  EBI   
8LE  "Initial release"   2019-08-28  RCSB  
##
