data_9LE
# 
_chem_comp.id                                    9LE 
_chem_comp.name                                  "(2~{R},3~{S},4~{R},5~{R},6~{R})-5-azanyl-2-(hydroxymethyl)-6-(4-naphthalen-2-yl-1~{H}-imidazol-2-yl)oxane-3,4-diol" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C19 H21 N3 O4" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2017-06-01 
_chem_comp.pdbx_modified_date                    2017-09-22 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        355.388 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     9LE 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        5O52 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  EBI 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
9LE "O6'" O1  O 0 1 N N N 33.384 18.749 27.262 4.212  0.213  3.428  "O6'" 9LE 1  
9LE "C6'" C1  C 0 1 N N N 32.333 19.523 27.841 4.318  1.089  2.304  "C6'" 9LE 2  
9LE "C5'" C2  C 0 1 N N R 32.467 20.999 27.522 4.071  0.299  1.017  "C5'" 9LE 3  
9LE "C4'" C3  C 0 1 N N S 32.598 21.235 26.004 4.306  1.208  -0.193 "C4'" 9LE 4  
9LE "O4'" O2  O 0 1 N N N 31.416 20.804 25.328 5.668  1.638  -0.209 "O4'" 9LE 5  
9LE "C3'" C4  C 0 1 N N R 32.834 22.699 25.693 3.998  0.428  -1.475 "C3'" 9LE 6  
9LE "O3'" O3  O 0 1 N N N 33.131 22.821 24.293 4.144  1.290  -2.605 "O3'" 9LE 7  
9LE "O5'" O4  O 0 1 N N N 33.598 21.544 28.209 2.723  -0.175 1.000  "O5'" 9LE 8  
9LE "C1'" C5  C 0 1 N N R 33.707 22.963 28.048 2.392  -0.951 -0.153 "C1'" 9LE 9  
9LE "C2'" C6  C 0 1 N N R 33.967 23.263 26.561 2.559  -0.093 -1.410 "C2'" 9LE 10 
9LE "N2'" N1  N 0 1 N N N 34.114 24.715 26.354 2.276  -0.905 -2.600 "N2'" 9LE 11 
9LE C1    C7  C 0 1 Y N N 34.827 23.410 28.901 0.963  -1.418 -0.051 C1    9LE 12 
9LE N2    N2  N 0 1 Y N N 36.124 23.220 28.626 0.564  -2.704 0.068  N2    9LE 13 
9LE C3    C8  C 0 1 Y N N 36.866 23.732 29.630 -0.801 -2.706 0.132  C3    9LE 14 
9LE C4    C9  C 0 1 Y N N 35.978 24.274 30.543 -1.197 -1.408 0.050  C4    9LE 15 
9LE N5    N3  N 0 1 Y N N 34.721 24.047 30.089 -0.088 -0.647 -0.056 N5    9LE 16 
9LE C6    C10 C 0 1 Y N N 36.338 24.902 31.838 -2.596 -0.917 0.077  C6    9LE 17 
9LE C11   C11 C 0 1 Y N N 35.357 25.010 32.834 -3.653 -1.833 0.203  C11   9LE 18 
9LE C10   C12 C 0 1 Y N N 35.680 25.560 34.068 -4.943 -1.410 0.231  C10   9LE 19 
9LE C9    C13 C 0 1 Y N N 36.983 25.972 34.327 -5.234 -0.037 0.133  C9    9LE 20 
9LE C15   C14 C 0 1 Y N N 37.304 26.512 35.574 -6.560 0.427  0.160  C15   9LE 21 
9LE C14   C15 C 0 1 Y N N 38.616 26.932 35.829 -6.810 1.762  0.064  C14   9LE 22 
9LE C13   C16 C 0 1 Y N N 39.599 26.822 34.836 -5.769 2.680  -0.062 C13   9LE 23 
9LE C12   C17 C 0 1 Y N N 39.276 26.273 33.590 -4.472 2.268  -0.091 C12   9LE 24 
9LE C8    C18 C 0 1 Y N N 37.966 25.858 33.335 -4.175 0.897  0.006  C8    9LE 25 
9LE C7    C19 C 0 1 Y N N 37.645 25.309 32.098 -2.848 0.439  -0.016 C7    9LE 26 
9LE H1    H1  H 0 1 N N N 33.263 17.833 27.485 4.357  0.647  4.280  H1    9LE 27 
9LE H2    H2  H 0 1 N N N 31.370 19.162 27.450 3.577  1.883  2.391  H2    9LE 28 
9LE H3    H3  H 0 1 N N N 32.357 19.393 28.933 5.317  1.525  2.276  H3    9LE 29 
9LE H4    H4  H 0 1 N N N 31.554 21.508 27.865 4.755  -0.548 0.973  H4    9LE 30 
9LE H5    H5  H 0 1 N N N 33.462 20.658 25.641 3.650  2.077  -0.128 H5    9LE 31 
9LE H6    H6  H 0 1 N N N 31.259 19.886 25.517 5.933  2.136  0.576  H6    9LE 32 
9LE H7    H7  H 0 1 N N N 31.914 23.257 25.923 4.686  -0.412 -1.564 H7    9LE 33 
9LE H8    H8  H 0 1 N N N 33.282 23.734 24.079 5.031  1.662  -2.704 H8    9LE 34 
9LE H9    H9  H 0 1 N N N 32.777 23.461 28.359 3.053  -1.815 -0.212 H9    9LE 35 
9LE H10   H10 H 0 1 N N N 34.903 22.764 26.270 1.868  0.750  -1.370 H10   9LE 36 
9LE H11   H11 H 0 1 N N N 34.856 25.061 26.928 2.385  -0.361 -3.443 H11   9LE 37 
9LE H12   H12 H 0 1 N N N 34.325 24.895 25.393 2.860  -1.728 -2.623 H12   9LE 38 
9LE H14   H14 H 0 1 N N N 36.484 22.771 27.808 1.141  -3.483 0.101  H14   9LE 39 
9LE H15   H15 H 0 1 N N N 37.943 23.721 29.706 -1.441 -3.570 0.228  H15   9LE 40 
9LE H17   H17 H 0 1 N N N 34.351 24.666 32.642 -3.438 -2.889 0.278  H17   9LE 41 
9LE H18   H18 H 0 1 N N N 34.919 25.668 34.827 -5.745 -2.126 0.328  H18   9LE 42 
9LE H19   H19 H 0 1 N N N 36.546 26.605 36.337 -7.377 -0.272 0.257  H19   9LE 43 
9LE H20   H20 H 0 1 N N N 38.871 27.342 36.795 -7.830 2.115  0.085  H20   9LE 44 
9LE H21   H21 H 0 1 N N N 40.605 27.161 35.032 -5.995 3.733  -0.137 H21   9LE 45 
9LE H22   H22 H 0 1 N N N 40.035 26.170 32.829 -3.675 2.990  -0.189 H22   9LE 46 
9LE H23   H23 H 0 1 N N N 38.407 25.198 31.341 -2.032 1.139  -0.108 H23   9LE 47 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
9LE "O3'" "C3'" SING N N 1  
9LE "O4'" "C4'" SING N N 2  
9LE "C3'" "C4'" SING N N 3  
9LE "C3'" "C2'" SING N N 4  
9LE "C4'" "C5'" SING N N 5  
9LE "N2'" "C2'" SING N N 6  
9LE "C2'" "C1'" SING N N 7  
9LE "O6'" "C6'" SING N N 8  
9LE "C5'" "C6'" SING N N 9  
9LE "C5'" "O5'" SING N N 10 
9LE "C1'" "O5'" SING N N 11 
9LE "C1'" C1    SING N N 12 
9LE N2    C1    SING Y N 13 
9LE N2    C3    SING Y N 14 
9LE C1    N5    DOUB Y N 15 
9LE C3    C4    DOUB Y N 16 
9LE N5    C4    SING Y N 17 
9LE C4    C6    SING N N 18 
9LE C6    C7    DOUB Y N 19 
9LE C6    C11   SING Y N 20 
9LE C7    C8    SING Y N 21 
9LE C11   C10   DOUB Y N 22 
9LE C8    C12   DOUB Y N 23 
9LE C8    C9    SING Y N 24 
9LE C12   C13   SING Y N 25 
9LE C10   C9    SING Y N 26 
9LE C9    C15   DOUB Y N 27 
9LE C13   C14   DOUB Y N 28 
9LE C15   C14   SING Y N 29 
9LE "O6'" H1    SING N N 30 
9LE "C6'" H2    SING N N 31 
9LE "C6'" H3    SING N N 32 
9LE "C5'" H4    SING N N 33 
9LE "C4'" H5    SING N N 34 
9LE "O4'" H6    SING N N 35 
9LE "C3'" H7    SING N N 36 
9LE "O3'" H8    SING N N 37 
9LE "C1'" H9    SING N N 38 
9LE "C2'" H10   SING N N 39 
9LE "N2'" H11   SING N N 40 
9LE "N2'" H12   SING N N 41 
9LE N2    H14   SING N N 42 
9LE C3    H15   SING N N 43 
9LE C11   H17   SING N N 44 
9LE C10   H18   SING N N 45 
9LE C15   H19   SING N N 46 
9LE C14   H20   SING N N 47 
9LE C13   H21   SING N N 48 
9LE C12   H22   SING N N 49 
9LE C7    H23   SING N N 50 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
9LE InChI            InChI                1.03  "InChI=1S/C19H21N3O4/c20-15-17(25)16(24)14(9-23)26-18(15)19-21-8-13(22-19)12-6-5-10-3-1-2-4-11(10)7-12/h1-8,14-18,23-25H,9,20H2,(H,21,22)/t14-,15-,16-,17-,18-/m1/s1" 
9LE InChIKey         InChI                1.03  VXVNVASERGBQNT-DUQPFJRNSA-N                                                                                                                                           
9LE SMILES_CANONICAL CACTVS               3.385 "N[C@@H]1[C@@H](O)[C@H](O)[C@@H](CO)O[C@H]1c2[nH]cc(n2)c3ccc4ccccc4c3"                                                                                                
9LE SMILES           CACTVS               3.385 "N[CH]1[CH](O)[CH](O)[CH](CO)O[CH]1c2[nH]cc(n2)c3ccc4ccccc4c3"                                                                                                        
9LE SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "c1ccc2cc(ccc2c1)c3c[nH]c(n3)[C@H]4[C@@H]([C@H]([C@@H]([C@H](O4)CO)O)O)N"                                                                                             
9LE SMILES           "OpenEye OEToolkits" 2.0.6 "c1ccc2cc(ccc2c1)c3c[nH]c(n3)C4C(C(C(C(O4)CO)O)O)N"                                                                                                                   
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
9LE "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "(2~{R},3~{S},4~{R},5~{R},6~{R})-5-azanyl-2-(hydroxymethyl)-6-(4-naphthalen-2-yl-1~{H}-imidazol-2-yl)oxane-3,4-diol" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
9LE "Create component" 2017-06-01 EBI  
9LE "Initial release"  2017-09-27 RCSB 
# 
