data_CFE
#

_chem_comp.id                                   CFE
_chem_comp.name                                 "(8R)-3-beta-D-ribofuranosyl-3,6,7,8-tetrahydroimidazo[4,5-d][1,3]diazepin-8-ol"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C11 H16 N4 O5"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        Coformycin
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2010-01-26
_chem_comp.pdbx_modified_date                   2021-03-01
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       284.269
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    CFE
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       3LGG
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
CFE  N1    N1    N  0  1  Y  N  N  -12.160  -4.309  -16.764  -1.532   2.022  -0.790  N1    CFE   1  
CFE  C2    C2    C  0  1  Y  N  N  -13.330  -4.293  -17.457  -0.271   1.772  -0.590  C2    CFE   2  
CFE  N3    N3    N  0  1  Y  N  N  -14.373  -4.510  -16.635  -0.154   0.543  -0.027  N3    CFE   3  
CFE  N4    N4    N  0  1  N  N  N  -14.581  -4.900  -14.265  -1.687  -1.191   0.630  N4    CFE   4  
CFE  C5    C5    C  0  1  N  N  N  -14.219  -4.748  -13.054  -2.800  -1.794   0.780  C5    CFE   5  
CFE  N6    N6    N  0  1  N  N  N  -13.129  -4.303  -12.553  -4.021  -1.309   0.473  N6    CFE   6  
CFE  C7    C7    C  0  1  N  N  N  -11.904  -3.776  -13.175  -4.299  -0.457  -0.666  C7    CFE   7  
CFE  C8    C8    C  0  1  N  N  R  -11.409  -4.623  -14.336  -3.776   0.950  -0.446  C8    CFE   8  
CFE  O8    O8    O  0  1  N  N  N  -11.179  -5.967  -13.896  -4.316   1.461   0.775  O8    CFE   9  
CFE  C9    C9    C  0  1  Y  N  N  -12.384  -4.538  -15.449  -2.276   0.980  -0.370  C9    CFE  10  
CFE  C10   C10   C  0  1  Y  N  N  -13.853  -4.635  -15.407  -1.436   0.032   0.109  C10   CFE  11  
CFE  C1S   C1S   C  0  1  N  N  R  -15.801  -4.546  -17.023   1.092  -0.120   0.362  C1S   CFE  12  
CFE  C2S   C2S   C  0  1  N  N  R  -16.276  -3.113  -17.197   1.616  -1.017  -0.788  C2S   CFE  13  
CFE  O2S   O2S   O  0  1  N  N  N  -17.401  -2.894  -16.355   1.023  -2.316  -0.732  O2S   CFE  14  
CFE  C3S   C3S   C  0  1  N  N  S  -16.676  -2.988  -18.652   3.132  -1.088  -0.481  C3S   CFE  15  
CFE  O3S   O3S   O  0  1  N  N  N  -17.927  -2.312  -18.779   3.444  -2.295   0.218  O3S   CFE  16  
CFE  C4S   C4S   C  0  1  N  N  R  -16.807  -4.422  -19.131   3.393   0.140   0.413  C4S   CFE  17  
CFE  O4S   O4S   O  0  1  N  N  N  -15.970  -5.212  -18.278   2.148   0.848   0.545  O4S   CFE  18  
CFE  C5S   C5S   C  0  1  N  N  N  -16.391  -4.578  -20.582   4.441   1.044  -0.239  C5S   CFE  19  
CFE  O5S   O5S   O  0  1  N  N  N  -16.799  -5.878  -21.017   4.763   2.117   0.649  O5S   CFE  20  
CFE  H2    H2    H  0  1  N  N  N  -13.411  -4.129  -18.521   0.548   2.433  -0.832  H2    CFE  21  
CFE  H5    H5    H  0  1  N  N  N  -14.958  -5.045  -12.325  -2.763  -2.791   1.193  H5    CFE  22  
CFE  HN6   HN6   H  0  1  N  N  N  -13.105  -4.316  -11.553  -4.762  -1.546   1.053  HN6   CFE  23  
CFE  H7    H7    H  0  1  N  N  N  -12.117  -2.765  -13.553  -3.824  -0.879  -1.552  H7    CFE  24  
CFE  H7A   H7A   H  0  1  N  N  N  -11.115  -3.746  -12.409  -5.377  -0.415  -0.826  H7A   CFE  25  
CFE  H8    H8    H  0  1  N  N  N  -10.446  -4.245  -14.710  -4.102   1.583  -1.270  H8    CFE  26  
CFE  HO8   HO8   H  0  1  N  N  N  -10.870  -6.491  -14.626  -5.281   1.505   0.790  HO8   CFE  27  
CFE  H1S   H1S   H  0  1  N  N  N  -16.369  -5.080  -16.247   0.947  -0.706   1.270  H1S   CFE  28  
CFE  H2S   H2S   H  0  1  N  N  N  -15.502  -2.377  -16.932   1.436  -0.552  -1.757  H2S   CFE  29  
CFE  HO2S  HO2S  H  0  0  N  N  N  -17.705  -2.000  -16.458   1.319  -2.915  -1.431  HO2S  CFE  30  
CFE  H3S   H3S   H  0  1  N  N  N  -15.945  -2.408  -19.234   3.711  -1.020  -1.401  H3S   CFE  31  
CFE  HO3S  HO3S  H  0  0  N  N  N  -18.159  -2.244  -19.698   4.381  -2.391   0.437  HO3S  CFE  32  
CFE  H4S   H4S   H  0  1  N  N  N  -17.857  -4.745  -19.081   3.739  -0.183   1.395  H4S   CFE  33  
CFE  H5S   H5S   H  0  1  N  N  N  -16.875  -3.806  -21.198   5.340   0.465  -0.449  H5S   CFE  34  
CFE  H5SA  H5SA  H  0  0  N  N  N  -15.300  -4.475  -20.674   4.044   1.449  -1.169  H5SA  CFE  35  
CFE  HO5S  HO5S  H  0  0  N  N  N  -16.549  -6.001  -21.925   5.423   2.732   0.300  HO5S  CFE  36  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
CFE  C2   N1    DOUB  Y  N   1  
CFE  N1   C9    SING  Y  N   2  
CFE  C2   N3    SING  Y  N   3  
CFE  C2   H2    SING  N  N   4  
CFE  C1S  N3    SING  N  N   5  
CFE  N3   C10   SING  Y  N   6  
CFE  C10  N4    SING  N  N   7  
CFE  N4   C5    DOUB  N  N   8  
CFE  C5   N6    SING  N  N   9  
CFE  C5   H5    SING  N  N  10  
CFE  C7   N6    SING  N  N  11  
CFE  N6   HN6   SING  N  N  12  
CFE  C8   C7    SING  N  N  13  
CFE  C7   H7    SING  N  N  14  
CFE  C7   H7A   SING  N  N  15  
CFE  C9   C8    SING  N  N  16  
CFE  C8   O8    SING  N  N  17  
CFE  C8   H8    SING  N  N  18  
CFE  O8   HO8   SING  N  N  19  
CFE  C9   C10   DOUB  Y  N  20  
CFE  O4S  C1S   SING  N  N  21  
CFE  C2S  C1S   SING  N  N  22  
CFE  C1S  H1S   SING  N  N  23  
CFE  C3S  C2S   SING  N  N  24  
CFE  C2S  O2S   SING  N  N  25  
CFE  C2S  H2S   SING  N  N  26  
CFE  O2S  HO2S  SING  N  N  27  
CFE  C4S  C3S   SING  N  N  28  
CFE  O3S  C3S   SING  N  N  29  
CFE  C3S  H3S   SING  N  N  30  
CFE  O3S  HO3S  SING  N  N  31  
CFE  C5S  C4S   SING  N  N  32  
CFE  C4S  O4S   SING  N  N  33  
CFE  C4S  H4S   SING  N  N  34  
CFE  O5S  C5S   SING  N  N  35  
CFE  C5S  H5S   SING  N  N  36  
CFE  C5S  H5SA  SING  N  N  37  
CFE  O5S  HO5S  SING  N  N  38  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
CFE  SMILES_CANONICAL  CACTVS                3.352  "OC[C@H]1O[C@H]([C@H](O)[C@@H]1O)n2cnc3[C@H](O)CNC=Nc23"  
CFE  SMILES            CACTVS                3.352  "OC[CH]1O[CH]([CH](O)[CH]1O)n2cnc3[CH](O)CNC=Nc23"  
CFE  SMILES_CANONICAL  "OpenEye OEToolkits"  1.7.0  "c1nc2c(n1[C@H]3[C@@H]([C@@H]([C@H](O3)CO)O)O)N=CNC[C@H]2O"  
CFE  SMILES            "OpenEye OEToolkits"  1.7.0  "c1nc2c(n1C3C(C(C(O3)CO)O)O)N=CNCC2O"  
CFE  InChI             InChI                 1.03   "InChI=1S/C11H16N4O5/c16-2-6-8(18)9(19)11(20-6)15-4-14-7-5(17)1-12-3-13-10(7)15/h3-6,8-9,11,16-19H,1-2H2,(H,12,13)/t5-,6-,8-,9-,11-/m1/s1"  
CFE  InChIKey          InChI                 1.03   YOOVTUPUBVHMPG-LODYRLCVSA-N  
#
_pdbx_chem_comp_identifier.comp_id          CFE
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  1.6.1
_pdbx_chem_comp_identifier.identifier       "(2R,3R,4S,5R)-2-[(8R)-8-hydroxy-7,8-dihydro-6H-imidazo[4,5-d][1,3]diazepin-3-yl]-5-(hydroxymethyl)oxolane-3,4-diol"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
CFE  "Create component"      2010-01-26  RCSB  
CFE  "Modify aromatic_flag"  2011-06-04  RCSB  
CFE  "Modify descriptor"     2011-06-04  RCSB  
CFE  "Modify synonyms"       2021-03-01  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     CFE
_pdbx_chem_comp_synonyms.name        Coformycin
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
