data_DPE
# 
_chem_comp.id                                    DPE 
_chem_comp.name                                  "N-UNDECANYLPHOSPHONATE METHYL ESTER GROUP" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C12 H27 O2 P" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     1999-07-08 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        234.315 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     DPE 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        "OpenEye/OEToolkits V1.4.2" 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        1XZM 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
DPE C1   C1   C 0 1 N N N N N N 9.920  54.556 16.458 2.956 8.033  7.828  C1   DPE 1  
DPE C2   C2   C 0 1 N N N N N N 9.752  53.186 15.817 2.956 6.649  7.191  C2   DPE 2  
DPE C3   C3   C 0 1 N N N N N N 10.619 53.014 14.582 2.880 6.675  5.664  C3   DPE 3  
DPE C4   C4   C 0 1 N N N N N N 11.953 52.363 14.920 2.957 5.285  5.029  C4   DPE 4  
DPE C5   C5   C 0 1 N N N N N N 11.874 50.852 14.836 2.948 5.372  3.501  C5   DPE 5  
DPE C6   C6   C 0 1 N N N N N N 13.231 50.241 14.530 2.994 3.981  2.864  C6   DPE 6  
DPE C7   C7   C 0 1 N N N N N N 13.722 49.373 15.676 2.951 4.071  1.337  C7   DPE 7  
DPE C8   C8   C 0 1 N N N N N N 15.070 48.735 15.359 3.017 2.706  0.645  C8   DPE 8  
DPE C9   C9   C 0 1 N N N N N N 16.161 49.784 15.176 3.049 2.799  -0.882 C9   DPE 9  
DPE C10  C10  C 0 1 N N N N N N 17.505 49.140 14.869 3.102 1.410  -1.520 C10  DPE 10 
DPE C11  C11  C 0 1 N N N N N N 17.943 49.483 13.459 3.102 1.494  -3.038 C11  DPE 11 
DPE P    P    P 0 1 N N R N N N 8.803  54.957 17.570 1.462 8.968  7.414  P    DPE 12 
DPE O1P  O1P  O 0 1 N N N N N N 8.490  53.602 18.332 0.310 8.419  8.215  O1P  DPE 13 
DPE O2P  O2P  O 0 1 N N N N N N 9.326  56.068 18.633 1.867 10.452 7.942  O2P  DPE 14 
DPE CM   CM   C 0 1 N N N N N N 9.561  57.427 18.282 3.048 11.058 7.446  CM   DPE 15 
DPE H11  1H1  H 0 1 N N N N N N 10.941 54.648 16.894 3.011 7.953  8.918  H11  DPE 16 
DPE H12  2H1  H 0 1 N N N N N N 9.969  55.341 15.668 3.814 8.620  7.488  H12  DPE 17 
DPE H21  1H2  H 0 1 N N N N N N 9.938  52.371 16.555 2.126 6.060  7.600  H21  DPE 18 
DPE H22  2H2  H 0 1 N N N N N N 8.680  52.978 15.588 3.874 6.128  7.488  H22  DPE 19 
DPE H31  1H3  H 0 1 N N N N N N 10.082 52.451 13.782 1.955 7.174  5.350  H31  DPE 20 
DPE H32  2H3  H 0 1 N N N N N N 10.762 53.981 14.046 3.711 7.286  5.291  H32  DPE 21 
DPE H41  1H4  H 0 1 N N N N N N 12.774 52.763 14.282 3.872 4.779  5.362  H41  DPE 22 
DPE H42  2H4  H 0 1 N N N N N N 12.328 52.696 15.915 2.109 4.674  5.358  H42  DPE 23 
DPE H51  1H5  H 0 1 N N N N N N 11.428 50.414 15.759 3.810 5.960  3.162  H51  DPE 24 
DPE H52  2H5  H 0 1 N N N N N N 11.103 50.523 14.100 2.046 5.899  3.169  H52  DPE 25 
DPE H61  1H6  H 0 1 N N N N N N 13.216 49.677 13.568 2.145 3.393  3.230  H61  DPE 26 
DPE H62  2H6  H 0 1 N N N N N N 13.979 51.022 14.260 3.908 3.464  3.177  H62  DPE 27 
DPE H71  1H7  H 0 1 N N N N N N 13.756 49.943 16.633 2.043 4.600  1.021  H71  DPE 28 
DPE H72  2H7  H 0 1 N N N N N N 12.964 48.605 15.959 3.802 4.670  0.990  H72  DPE 29 
DPE H81  1H8  H 0 1 N N N N N N 15.355 47.982 16.130 3.922 2.192  0.991  H81  DPE 30 
DPE H82  2H8  H 0 1 N N N N N N 15.002 48.060 14.474 2.165 2.092  0.961  H82  DPE 31 
DPE H91  1H9  H 0 1 N N N N N N 15.880 50.533 14.400 3.924 3.381  -1.197 H91  DPE 32 
DPE H92  2H9  H 0 1 N N N N N N 16.225 50.464 16.057 2.160 3.326  -1.246 H92  DPE 33 
DPE H101 1H10 H 0 0 N N N N N N 18.279 49.413 15.623 4.005 0.882  -1.190 H101 DPE 34 
DPE H102 2H10 H 0 0 N N N N N N 17.487 48.038 15.042 2.241 0.817  -1.192 H102 DPE 35 
DPE H111 1H11 H 0 0 N N N N N N 18.927 49.011 13.234 2.196 1.987  -3.404 H111 DPE 36 
DPE H112 2H11 H 0 0 N N N N N N 17.168 49.209 12.704 3.970 2.055  -3.400 H112 DPE 37 
DPE H113 3H11 H 0 0 N N N N N N 17.960 50.584 13.285 3.141 0.490  -3.473 H113 DPE 38 
DPE HM1  1HM  H 0 1 N N N N N N 9.920  58.189 19.011 3.367 10.546 6.535  HM1  DPE 39 
DPE HM2  2HM  H 0 1 N N N N N N 10.268 57.431 17.420 3.833 11.001 8.203  HM2  DPE 40 
DPE HM3  3HM  H 0 1 N N N N N N 8.623  57.819 17.823 2.840 12.107 7.218  HM3  DPE 41 
DPE HP1  HP1  H 0 1 N N N N N N 7.671  55.539 16.940 1.322 9.160  6.025  HP1  DPE 42 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
DPE C1  C2   SING N N 1  
DPE C1  P    SING N N 2  
DPE C1  H11  SING N N 3  
DPE C1  H12  SING N N 4  
DPE C2  C3   SING N N 5  
DPE C2  H21  SING N N 6  
DPE C2  H22  SING N N 7  
DPE C3  C4   SING N N 8  
DPE C3  H31  SING N N 9  
DPE C3  H32  SING N N 10 
DPE C4  C5   SING N N 11 
DPE C4  H41  SING N N 12 
DPE C4  H42  SING N N 13 
DPE C5  C6   SING N N 14 
DPE C5  H51  SING N N 15 
DPE C5  H52  SING N N 16 
DPE C6  C7   SING N N 17 
DPE C6  H61  SING N N 18 
DPE C6  H62  SING N N 19 
DPE C7  C8   SING N N 20 
DPE C7  H71  SING N N 21 
DPE C7  H72  SING N N 22 
DPE C8  C9   SING N N 23 
DPE C8  H81  SING N N 24 
DPE C8  H82  SING N N 25 
DPE C9  C10  SING N N 26 
DPE C9  H91  SING N N 27 
DPE C9  H92  SING N N 28 
DPE C10 C11  SING N N 29 
DPE C10 H101 SING N N 30 
DPE C10 H102 SING N N 31 
DPE C11 H111 SING N N 32 
DPE C11 H112 SING N N 33 
DPE C11 H113 SING N N 34 
DPE P   O1P  DOUB N N 35 
DPE P   O2P  SING N N 36 
DPE O2P CM   SING N N 37 
DPE CM  HM1  SING N N 38 
DPE CM  HM2  SING N N 39 
DPE CM  HM3  SING N N 40 
DPE HP1 P    SING N N 41 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
DPE SMILES           ACDLabs              10.04 "O=P(OC)CCCCCCCCCCC"                                                        
DPE SMILES_CANONICAL CACTVS               3.341 "CCCCCCCCCCC[P@@H](=O)OC"                                                   
DPE SMILES           CACTVS               3.341 "CCCCCCCCCCC[PH](=O)OC"                                                     
DPE SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "CCCCCCCCCCC[P@@H](=O)OC"                                                   
DPE SMILES           "OpenEye OEToolkits" 1.5.0 "CCCCCCCCCCCP(=O)OC"                                                        
DPE InChI            InChI                1.03  "InChI=1S/C12H27O2P/c1-3-4-5-6-7-8-9-10-11-12-15(13)14-2/h15H,3-12H2,1-2H3" 
DPE InChIKey         InChI                1.03  FYHIOSOXVZDSJI-UHFFFAOYSA-N                                                 
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
DPE "SYSTEMATIC NAME" ACDLabs              10.04 "methyl (S)-undecylphosphinate" 
DPE "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 1-methoxyphosphonoylundecane    
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
DPE "Create component"  1999-07-08 RCSB 
DPE "Modify descriptor" 2011-06-04 RCSB 
DPE "Modify PCM"        2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            DPE 
_pdbx_chem_comp_pcm.modified_residue_id                SER 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           Lipid/lipid-like 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               P 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   OG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
