data_O2E
# 
_chem_comp.id                                    O2E 
_chem_comp.name                                  "(2~{S},3~{R})-2-[(2~{S},3~{R})-1-[(2~{R})-2-azanyl-3-oxidanylidene-propoxy]-3-oxidanyl-1-oxidanylidene-butan-2-yl]-4-[(3~{S},5~{S})-5-[(3-carboxyphenyl)carbamoyl]pyrrolidin-3-yl]sulfanyl-3-methyl-3,4-dihydro-2~{H}-pyrrole-5-carboxylic acid" 
_chem_comp.type                                  "L-peptide linking" 
_chem_comp.pdbx_type                             ATOMP 
_chem_comp.formula                               "C25 H32 N4 O9 S" 
_chem_comp.mon_nstd_parent_comp_id               SER 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2020-01-21 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        564.608 
_chem_comp.one_letter_code                       S 
_chem_comp.three_letter_code                     O2E 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        6XV5 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
_chem_comp.pdbx_pcm                              N 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
O2E C11 C1  C 0 1 N N S N N N 17.945 -31.253 50.986 -1.605 0.003  -0.414 C11 O2E 1  
O2E C18 C2  C 0 1 Y N N N N N 24.378 -32.824 52.301 8.943  0.530  -0.337 C18 O2E 2  
O2E C17 C3  C 0 1 Y N N N N N 23.364 -33.708 51.956 7.615  0.440  0.084  C17 O2E 3  
O2E C6  C4  C 0 1 N N R N N N 15.220 -28.256 48.592 -5.559 -2.725 -0.652 C6  O2E 4  
O2E O6  O1  O 0 1 N N N N N N 16.669 -31.397 54.244 -2.112 -1.192 3.220  O6  O2E 5  
O2E C5  C5  C 0 1 N N S N N N 15.921 -28.586 49.921 -4.919 -1.412 -1.107 C5  O2E 6  
O2E O5  O2  O 0 1 N N N N N N 18.713 -30.831 53.848 -0.664 0.258  2.370  O5  O2E 7  
O2E C16 C6  C 0 1 Y N N N N N 23.542 -35.083 52.109 7.024  -0.804 0.237  C16 O2E 8  
O2E O4  O3  O 0 1 N N N N N N 13.814 -28.287 48.802 -5.168 -3.003 0.694  O4  O2E 9  
O2E C2  C7  C 0 1 N N N N N N 13.159 -27.620 52.180 -6.976 1.551  0.046  C2  O2E 10 
O2E C15 C8  C 0 1 N N N N N N 21.412 -35.800 51.039 4.808  0.057  0.319  C15 O2E 11 
O2E C1  C9  C 0 1 N N N N N N 15.285 -27.783 51.047 -5.480 -0.272 -0.297 C1  O2E 12 
O2E C12 C10 C 0 1 N N S N N N 19.035 -33.632 52.038 1.100  -0.354 0.371  C12 O2E 13 
O2E C19 C11 C 0 1 N N N N N N 24.177 -31.359 52.121 9.582  1.852  -0.496 C19 O2E 14 
O2E C10 C12 C 0 1 N N N N N N 17.569 -31.044 53.506 -1.583 -0.513 2.184  C10 O2E 15 
O2E C21 C13 C 0 1 Y N N N N N 25.745 -34.683 52.980 9.068  -1.868 -0.446 C21 O2E 16 
O2E C22 C14 C 0 1 Y N N N N N 24.740 -35.564 52.635 7.754  -1.957 -0.029 C22 O2E 17 
O2E C20 C15 C 0 1 Y N N N N N 25.570 -33.318 52.819 9.666  -0.634 -0.601 C20 O2E 18 
O2E C7  C16 C 0 1 N N N N N N 15.539 -29.195 47.445 -5.093 -3.862 -1.563 C7  O2E 19 
O2E C8  C17 C 0 1 N N S N N N 16.024 -30.080 50.226 -3.404 -1.485 -0.904 C8  O2E 20 
O2E C9  C18 C 0 1 N N N N N N 17.234 -30.851 52.063 -2.123 -0.707 0.817  C9  O2E 21 
O2E C13 C19 C 0 1 N N N N N N 20.064 -33.814 53.141 1.349  1.167  0.450  C13 O2E 22 
O2E C14 C20 C 0 1 N N S N N N 20.116 -35.827 51.845 3.414  0.033  0.892  C14 O2E 23 
O2E O9  O4  O 0 1 N N N N N N 21.421 -35.609 49.835 5.133  0.939  -0.449 O9  O2E 24 
O2E O7  O5  O 0 1 N N N N N N 25.246 -30.703 51.742 8.950  2.864  -0.265 O7  O2E 25 
O2E O1  O6  O 0 1 N N N N N N 15.719 -26.714 51.371 -5.026 -0.025 0.795  O1  O2E 26 
O2E O2  O7  O 0 1 N N N N N N 14.272 -28.401 51.658 -6.485 0.470  -0.789 O2  O2E 27 
O2E CA  C21 C 0 1 N N R N N N 13.679 -26.558 53.138 -8.113 2.278  -0.677 CA  O2E 28 
O2E C   C22 C 0 1 N N N N N N 12.780 -26.346 54.359 -8.540 3.474  0.134  C   O2E 29 
O2E O   O8  O 0 1 N N N N N N 11.686 -26.906 54.478 -9.676 3.558  0.535  O   O2E 30 
O2E N   N1  N 0 1 N N N N N N 14.120 -25.361 52.439 -9.252 1.365  -0.840 N   O2E 31 
O2E N2  N2  N 0 1 N N N N N N 16.095 -30.324 51.663 -3.082 -1.493 0.528  N2  O2E 32 
O2E S1  S1  S 0 1 N N N N N N 19.414 -32.197 50.984 -0.051 -0.746 -0.975 S1  O2E 33 
O2E N3  N3  N 0 1 N N N N N N 20.298 -35.258 53.181 2.778  1.360  0.755  N3  O2E 34 
O2E N4  N4  N 0 1 N N N N N N 22.526 -36.011 51.774 5.694  -0.900 0.660  N4  O2E 35 
O2E O8  O9  O 0 1 N N N N N N 23.093 -30.825 52.315 10.865 1.936  -0.897 O8  O2E 36 
O2E C23 C23 C 0 1 N N N N N N 19.033 -34.929 51.230 2.512  -0.924 0.073  C23 O2E 37 
O2E C24 C24 C 0 1 N N R N N N 17.276 -30.823 49.716 -2.725 -0.212 -1.461 C24 O2E 38 
O2E C25 C25 C 0 1 N N N N N N 18.255 -30.048 48.852 -3.697 0.970  -1.480 C25 O2E 39 
O2E H1  H1  H 0 1 N N N N N N 18.530 -30.322 51.008 -1.467 1.065  -0.214 H1  O2E 40 
O2E H2  H2  H 0 1 N N N N N N 22.431 -33.328 51.566 7.050  1.337  0.291  H2  O2E 41 
O2E H3  H3  H 0 1 N N N N N N 15.521 -27.240 48.296 -6.644 -2.638 -0.704 H3  O2E 42 
O2E H4  H4  H 0 1 N N N N N N 17.000 -31.480 55.131 -1.727 -1.032 4.092  H4  O2E 43 
O2E H5  H5  H 0 1 N N N N N N 16.953 -28.219 49.823 -5.136 -1.249 -2.163 H5  O2E 44 
O2E H6  H6  H 0 1 N N N N N N 13.587 -27.705 49.518 -4.228 -3.209 0.797  H6  O2E 45 
O2E H7  H7  H 0 1 N N N N N N 12.632 -27.133 51.346 -7.346 1.145  0.987  H7  O2E 46 
O2E H8  H8  H 0 1 N N N N N N 12.465 -28.285 52.714 -6.166 2.252  0.246  H8  O2E 47 
O2E H9  H9  H 0 1 N N N N N N 18.040 -33.454 52.471 0.724  -0.733 1.321  H9  O2E 48 
O2E H10 H10 H 0 1 N N N N N N 26.675 -35.061 53.379 9.630  -2.768 -0.650 H10 O2E 49 
O2E H11 H11 H 0 1 N N N N N N 24.882 -36.626 52.773 7.292  -2.926 0.091  H11 O2E 50 
O2E H12 H12 H 0 1 N N N N N N 26.361 -32.637 53.096 10.694 -0.569 -0.927 H12 O2E 51 
O2E H13 H13 H 0 1 N N N N N N 16.623 -29.192 47.259 -5.549 -4.798 -1.239 H13 O2E 52 
O2E H14 H14 H 0 1 N N N N N N 15.214 -30.214 47.704 -5.391 -3.650 -2.590 H14 O2E 53 
O2E H15 H15 H 0 1 N N N N N N 15.011 -28.861 46.540 -4.008 -3.949 -1.511 H15 O2E 54 
O2E H16 H16 H 0 1 N N N N N N 15.135 -30.581 49.815 -3.000 -2.374 -1.387 H16 O2E 55 
O2E H17 H17 H 0 1 N N N N N N 20.992 -33.275 52.901 1.108  1.632  -0.506 H17 O2E 56 
O2E H18 H18 H 0 1 N N N N N N 19.671 -33.456 54.104 0.738  1.602  1.241  H18 O2E 57 
O2E H19 H19 H 0 1 N N N N N N 19.743 -36.860 51.912 3.440  -0.270 1.939  H19 O2E 58 
O2E H20 H20 H 0 1 N N N N N N 14.598 -26.997 53.554 -7.768 2.608  -1.656 H20 O2E 59 
O2E H21 H21 H 0 1 N N N N N N 13.114 -25.683 55.144 -7.829 4.257  0.357  H21 O2E 60 
O2E H22 H22 H 0 1 N N N N N N 14.453 -24.691 53.102 -9.009 0.587  -1.434 H22 O2E 61 
O2E H23 H23 H 0 1 N N N N N N 14.857 -25.597 51.806 -9.590 1.045  0.055  H23 O2E 62 
O2E H25 H25 H 0 1 N N N N N N 19.650 -35.682 53.814 2.898  1.906  1.595  H25 O2E 63 
O2E H27 H27 H 0 1 N N N N N N 22.648 -36.939 52.126 5.409  -1.655 1.197  H27 O2E 64 
O2E H28 H28 H 0 1 N N N N N N 23.165 -29.892 52.149 11.240 2.823  -0.987 H28 O2E 65 
O2E H29 H29 H 0 1 N N N N N N 19.266 -34.720 50.175 2.602  -1.949 0.433  H29 O2E 66 
O2E H30 H30 H 0 1 N N N N N N 18.050 -35.418 51.298 2.742  -0.863 -0.990 H30 O2E 67 
O2E H31 H31 H 0 1 N N N N N N 16.949 -31.716 49.164 -2.308 -0.391 -2.452 H31 O2E 68 
O2E H32 H32 H 0 1 N N N N N N 19.091 -30.703 48.566 -4.012 1.197  -0.461 H32 O2E 69 
O2E H33 H33 H 0 1 N N N N N N 17.742 -29.692 47.946 -3.203 1.840  -1.910 H33 O2E 70 
O2E H34 H34 H 0 1 N N N N N N 18.641 -29.187 49.417 -4.570 0.713  -2.081 H34 O2E 71 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
O2E C7  C6  SING N N 1  
O2E C6  O4  SING N N 2  
O2E C6  C5  SING N N 3  
O2E C25 C24 SING N N 4  
O2E C24 C8  SING N N 5  
O2E C24 C11 SING N N 6  
O2E O9  C15 DOUB N N 7  
O2E C5  C8  SING N N 8  
O2E C5  C1  SING N N 9  
O2E C8  N2  SING N N 10 
O2E S1  C11 SING N N 11 
O2E S1  C12 SING N N 12 
O2E C11 C9  SING N N 13 
O2E C15 N4  SING N N 14 
O2E C15 C14 SING N N 15 
O2E C1  O1  DOUB N N 16 
O2E C1  O2  SING N N 17 
O2E C23 C14 SING N N 18 
O2E C23 C12 SING N N 19 
O2E O2  C2  SING N N 20 
O2E N2  C9  DOUB N N 21 
O2E O7  C19 DOUB N N 22 
O2E N4  C16 SING N N 23 
O2E C14 N3  SING N N 24 
O2E C17 C16 DOUB Y N 25 
O2E C17 C18 SING Y N 26 
O2E C12 C13 SING N N 27 
O2E C9  C10 SING N N 28 
O2E C16 C22 SING Y N 29 
O2E C19 C18 SING N N 30 
O2E C19 O8  SING N N 31 
O2E C2  CA  SING N N 32 
O2E C18 C20 DOUB Y N 33 
O2E N   CA  SING N N 34 
O2E C22 C21 DOUB Y N 35 
O2E C20 C21 SING Y N 36 
O2E CA  C   SING N N 37 
O2E C13 N3  SING N N 38 
O2E C10 O5  DOUB N N 39 
O2E C10 O6  SING N N 40 
O2E C   O   DOUB N N 41 
O2E C11 H1  SING N N 42 
O2E C17 H2  SING N N 43 
O2E C6  H3  SING N N 44 
O2E O6  H4  SING N N 45 
O2E C5  H5  SING N N 46 
O2E O4  H6  SING N N 47 
O2E C2  H7  SING N N 48 
O2E C2  H8  SING N N 49 
O2E C12 H9  SING N N 50 
O2E C21 H10 SING N N 51 
O2E C22 H11 SING N N 52 
O2E C20 H12 SING N N 53 
O2E C7  H13 SING N N 54 
O2E C7  H14 SING N N 55 
O2E C7  H15 SING N N 56 
O2E C8  H16 SING N N 57 
O2E C13 H17 SING N N 58 
O2E C13 H18 SING N N 59 
O2E C14 H19 SING N N 60 
O2E CA  H20 SING N N 61 
O2E C   H21 SING N N 62 
O2E N   H22 SING N N 63 
O2E N   H23 SING N N 64 
O2E N3  H25 SING N N 65 
O2E N4  H27 SING N N 66 
O2E O8  H28 SING N N 67 
O2E C23 H29 SING N N 68 
O2E C23 H30 SING N N 69 
O2E C24 H31 SING N N 70 
O2E C25 H32 SING N N 71 
O2E C25 H33 SING N N 72 
O2E C25 H34 SING N N 73 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
O2E InChI            InChI                1.03  "InChI=1S/C25H32N4O9S/c1-11-19(18(12(2)31)25(37)38-10-14(26)9-30)29-20(24(35)36)21(11)39-16-7-17(27-8-16)22(32)28-15-5-3-4-13(6-15)23(33)34/h3-6,9,11-12,14,16-19,21,27,31H,7-8,10,26H2,1-2H3,(H,28,32)(H,33,34)(H,35,36)/t11-,12-,14+,16+,17+,18-,19-,21+/m1/s1" 
O2E InChIKey         InChI                1.03  PARUKYQAUVQKHU-OKSCULGPSA-N                                                                                                                                                                                                                                       
O2E SMILES_CANONICAL CACTVS               3.385 "C[C@@H](O)[C@H]([C@@H]1N=C([C@@H](S[C@@H]2CN[C@@H](C2)C(=O)Nc3cccc(c3)C(O)=O)[C@@H]1C)C(O)=O)C(=O)OC[C@@H](N)C=O"                                                                                                                                                
O2E SMILES           CACTVS               3.385 "C[CH](O)[CH]([CH]1N=C([CH](S[CH]2CN[CH](C2)C(=O)Nc3cccc(c3)C(O)=O)[CH]1C)C(O)=O)C(=O)OC[CH](N)C=O"                                                                                                                                                               
O2E SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@@H]1[C@@H](N=C(C1S[C@H]2C[C@H](NC2)C(=O)Nc3cccc(c3)C(=O)O)C(=O)O)[C@@H]([C@@H](C)O)C(=O)OC[C@H](C=O)N"                                                                                                                                                       
O2E SMILES           "OpenEye OEToolkits" 2.0.7 "CC1C(C(=NC1C(C(C)O)C(=O)OCC(C=O)N)C(=O)O)SC2CC(NC2)C(=O)Nc3cccc(c3)C(=O)O"                                                                                                                                                                                       
# 
_pdbx_chem_comp_identifier.comp_id           O2E 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "(2~{S},3~{R})-2-[(2~{S},3~{R})-1-[(2~{R})-2-azanyl-3-oxidanylidene-propoxy]-3-oxidanyl-1-oxidanylidene-butan-2-yl]-4-[(3~{S},5~{S})-5-[(3-carboxyphenyl)carbamoyl]pyrrolidin-3-yl]sulfanyl-3-methyl-3,4-dihydro-2~{H}-pyrrole-5-carboxylic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
O2E "Create component"         2020-01-21 PDBE 
O2E "Modify component comp_id" 2020-01-22 PDBE 
O2E "Initial release"          2021-02-03 RCSB 
O2E "Modify PCM"               2024-09-27 PDBE 
# 
