data_VLE
# 
_chem_comp.id                                    VLE 
_chem_comp.name                                  "1-[(6aS)-3-chloro-2-(5-methyl-1H-indazol-4-yl)-5,6,6a,7,9,10-hexahydro-8H-pyrazino[1',2':5,6][1,5]oxazocino[4,3,2-de]quinazolin-8-yl]-2-propen-1-one" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C25 H25 Cl N6 O2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2021-05-27 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        476.958 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     VLE 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7OO7 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
VLE C1  C1  C  0 1 N N N N N N -9.672  2.831  11.974 5.642  -2.559 1.141  C1  VLE 1  
VLE C2  C2  C  0 1 N N N N N N -8.300  2.314  12.345 5.246  -1.774 -0.083 C2  VLE 2  
VLE C3  C3  C  0 1 N N N N N N -8.845  2.004  14.818 4.469  0.039  1.378  C3  VLE 3  
VLE C7  C4  C  0 1 Y N N N N N -6.043  -1.943 18.403 -0.735 2.084  1.214  C7  VLE 4  
VLE C8  C5  C  0 1 Y N N N N N -5.264  -3.095 18.621 -1.851 1.262  1.326  C8  VLE 5  
VLE C9  C6  C  0 1 Y N N N N N -5.029  -4.043 17.660 -2.101 0.313  0.342  C9  VLE 6  
VLE C10 C7  C  0 1 Y N N N N N -5.570  -3.838 16.396 -1.334 0.318  -0.833 C10 VLE 7  
VLE C11 C8  C  0 1 Y N N N N N -6.320  -2.719 16.108 -0.242 1.165  -0.943 C11 VLE 8  
VLE C12 C9  C  0 1 N N N N N N -7.768  -2.138 14.218 1.284  1.031  -2.827 C12 VLE 9  
VLE C13 C10 C  0 1 N N N N N N -7.236  -0.984 13.543 2.496  1.628  -2.109 C13 VLE 10 
VLE C14 C11 C  0 1 N N S N N N -6.772  0.024  14.573 2.850  0.711  -0.942 C14 VLE 11 
VLE C15 C12 C  0 1 N N N N N N -6.698  1.380  13.932 4.298  0.233  -1.127 C15 VLE 12 
VLE C16 C13 C  0 1 Y N N N N N -4.390  -5.344 18.024 -3.167 -0.695 0.532  C16 VLE 13 
VLE C19 C14 C  0 1 Y N N N N N -3.305  -7.917 18.464 -5.170 -2.673 0.926  C19 VLE 14 
VLE C20 C15 C  0 1 Y N N N N N -4.661  -7.680 18.633 -5.556 -1.467 0.304  C20 VLE 15 
VLE C21 C16 C  0 1 Y N N N N N -5.225  -6.406 18.438 -4.537 -0.427 0.089  C21 VLE 16 
VLE C22 C17 C  0 1 Y N N N N N -6.586  -6.564 18.790 -5.174 0.628  -0.526 C22 VLE 17 
VLE C24 C18 C  0 1 Y N N N N N -7.113  -0.154 19.258 0.685  3.715  1.984  C24 VLE 18 
VLE CL  CL1 CL 0 0 N N N N N N -5.307  -5.014 15.165 -1.752 -0.737 -2.148 CL  VLE 19 
VLE C6  C19 C  0 1 Y N N N N N -6.569  -1.709 17.086 0.243  1.778  0.205  C6  VLE 20 
VLE O1  O1  O  0 1 N N N N N N -6.713  -2.741 14.771 0.115  1.515  -2.195 O1  VLE 21 
VLE N1  N1  N  0 1 N N N N N N -7.655  0.049  15.755 2.691  1.368  0.332  N1  VLE 22 
VLE C4  C20 C  0 1 N N N N N N -8.957  0.677  15.537 3.004  0.476  1.463  C4  VLE 23 
VLE N   N2  N  0 1 N N N N N N -8.034  1.888  13.602 4.694  -0.552 0.050  N   VLE 24 
VLE O   O2  O  0 1 N N N N N N -7.440  2.360  11.483 5.423  -2.243 -1.187 O   VLE 25 
VLE C   C21 C  0 1 N N N N N N -9.662  4.300  11.661 6.240  -3.901 0.715  C   VLE 26 
VLE N4  N3  N  0 1 Y N N N N N -6.323  -1.151 19.490 -0.506 3.153  1.987  N4  VLE 27 
VLE N5  N4  N  0 1 Y N N N N N -7.636  0.248  18.096 1.704  3.173  1.347  N5  VLE 28 
VLE C5  C22 C  0 1 Y N N N N N -7.300  -0.515 17.024 1.561  2.078  0.586  C5  VLE 29 
VLE N2  N5  N  0 1 Y N N N N N -6.844  -7.800 19.169 -6.463 0.294  -0.685 N2  VLE 30 
VLE N3  N6  N  0 1 Y N N N N N -5.667  -8.480 19.065 -6.690 -0.989 -0.175 N3  VLE 31 
VLE C18 C23 C  0 1 Y N N N N N -2.495  -6.850 18.120 -3.884 -2.869 1.310  C18 VLE 32 
VLE C17 C24 C  0 1 Y N N N N N -3.003  -5.573 17.890 -2.891 -1.911 1.125  C17 VLE 33 
VLE C23 C25 C  0 1 N N N N N N -2.047  -4.484 17.461 -1.485 -2.208 1.581  C23 VLE 34 
VLE H1  H1  H  0 1 N N N N N N -10.357 2.653  12.816 6.383  -1.996 1.709  H1  VLE 35 
VLE H2  H2  H  0 1 N N N N N N -10.029 2.283  11.089 4.764  -2.733 1.762  H2  VLE 36 
VLE H3  H3  H  0 1 N N N N N N -8.377  2.737  15.491 5.119  0.903  1.512  H3  VLE 37 
VLE H4  H4  H  0 1 N N N N N N -9.853  2.349  14.544 4.677  -0.701 2.151  H4  VLE 38 
VLE H5  H5  H  0 1 N N N N N N -4.828  -3.239 19.598 -2.517 1.360  2.170  H5  VLE 39 
VLE H6  H6  H  0 1 N N N N N N -8.487  -1.834 14.992 1.289  1.337  -3.874 H6  VLE 40 
VLE H7  H7  H  0 1 N N N N N N -8.263  -2.809 13.501 1.314  -0.056 -2.761 H7  VLE 41 
VLE H8  H8  H  0 1 N N N N N N -6.386  -1.285 12.914 3.339  1.690  -2.797 H8  VLE 42 
VLE H9  H9  H  0 1 N N N N N N -8.017  -0.534 12.913 2.251  2.622  -1.735 H9  VLE 43 
VLE H10 H10 H  0 1 N N N N N N -5.760  -0.260 14.897 2.198  -0.162 -0.971 H10 VLE 44 
VLE H11 H11 H  0 1 N N N N N N -6.104  1.308  13.009 4.366  -0.389 -2.020 H11 VLE 45 
VLE H12 H12 H  0 1 N N N N N N -6.211  2.079  14.628 4.957  1.095  -1.232 H12 VLE 46 
VLE H13 H13 H  0 1 N N N N N N -2.893  -8.907 18.597 -5.903 -3.448 1.093  H13 VLE 47 
VLE H14 H14 H  0 1 N N N N N N -7.320  -5.773 18.753 -4.717 1.559  -0.826 H14 VLE 48 
VLE H15 H15 H  0 1 N N N N N N -7.388  0.434  20.121 0.830  4.642  2.518  H15 VLE 49 
VLE H16 H16 H  0 1 N N N N N N -9.437  0.843  16.513 2.360  -0.402 1.423  H16 VLE 50 
VLE H17 H17 H  0 1 N N N N N N -9.579  -0.000 14.933 2.837  1.007  2.401  H17 VLE 51 
VLE H18 H18 H  0 1 N N N N N N -10.679 4.626  11.398 5.499  -4.464 0.147  H18 VLE 52 
VLE H19 H19 H  0 1 N N N N N N -9.313  4.860  12.541 7.119  -3.727 0.094  H19 VLE 53 
VLE H20 H20 H  0 1 N N N N N N -8.986  4.490  10.814 6.527  -4.469 1.600  H20 VLE 54 
VLE H21 H21 H  0 1 N N N N N N -7.725  -8.165 19.471 -7.139 0.859  -1.093 H21 VLE 55 
VLE H22 H22 H  0 1 N N N N N N -1.431  -7.012 18.026 -3.622 -3.803 1.784  H22 VLE 56 
VLE H23 H23 H  0 1 N N N N N N -1.660  -3.964 18.350 -1.361 -1.878 2.612  H23 VLE 57 
VLE H24 H24 H  0 1 N N N N N N -1.210  -4.930 16.904 -1.301 -3.280 1.518  H24 VLE 58 
VLE H25 H25 H  0 1 N N N N N N -2.575  -3.766 16.816 -0.777 -1.679 0.943  H25 VLE 59 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
VLE O   C2  DOUB N N 1  
VLE C   C1  SING N N 2  
VLE C1  C2  SING N N 3  
VLE C2  N   SING N N 4  
VLE C13 C12 SING N N 5  
VLE C13 C14 SING N N 6  
VLE N   C15 SING N N 7  
VLE N   C3  SING N N 8  
VLE C15 C14 SING N N 9  
VLE C12 O1  SING N N 10 
VLE C14 N1  SING N N 11 
VLE O1  C11 SING N N 12 
VLE C3  C4  SING N N 13 
VLE CL  C10 SING N N 14 
VLE C4  N1  SING N N 15 
VLE N1  C5  SING N N 16 
VLE C11 C10 DOUB Y N 17 
VLE C11 C6  SING Y N 18 
VLE C10 C9  SING Y N 19 
VLE C5  C6  DOUB Y N 20 
VLE C5  N5  SING Y N 21 
VLE C6  C7  SING Y N 22 
VLE C23 C17 SING N N 23 
VLE C9  C16 SING N N 24 
VLE C9  C8  DOUB Y N 25 
VLE C17 C16 DOUB Y N 26 
VLE C17 C18 SING Y N 27 
VLE C16 C21 SING Y N 28 
VLE N5  C24 DOUB Y N 29 
VLE C18 C19 DOUB Y N 30 
VLE C7  C8  SING Y N 31 
VLE C7  N4  DOUB Y N 32 
VLE C21 C20 SING Y N 33 
VLE C21 C22 DOUB Y N 34 
VLE C19 C20 SING Y N 35 
VLE C20 N3  DOUB Y N 36 
VLE C22 N2  SING Y N 37 
VLE N3  N2  SING Y N 38 
VLE C24 N4  SING Y N 39 
VLE C1  H1  SING N N 40 
VLE C1  H2  SING N N 41 
VLE C3  H3  SING N N 42 
VLE C3  H4  SING N N 43 
VLE C8  H5  SING N N 44 
VLE C12 H6  SING N N 45 
VLE C12 H7  SING N N 46 
VLE C13 H8  SING N N 47 
VLE C13 H9  SING N N 48 
VLE C14 H10 SING N N 49 
VLE C15 H11 SING N N 50 
VLE C15 H12 SING N N 51 
VLE C19 H13 SING N N 52 
VLE C22 H14 SING N N 53 
VLE C24 H15 SING N N 54 
VLE C4  H16 SING N N 55 
VLE C4  H17 SING N N 56 
VLE C   H18 SING N N 57 
VLE C   H19 SING N N 58 
VLE C   H20 SING N N 59 
VLE N2  H21 SING N N 60 
VLE C18 H22 SING N N 61 
VLE C23 H23 SING N N 62 
VLE C23 H24 SING N N 63 
VLE C23 H25 SING N N 64 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
VLE InChI            InChI                1.03  "InChI=1S/C25H25ClN6O2/c1-3-20(33)31-7-8-32-15(12-31)6-9-34-24-22-19(27-13-28-25(22)32)10-16(23(24)26)21-14(2)4-5-18-17(21)11-29-30-18/h4-5,10-11,13,15H,3,6-9,12H2,1-2H3,(H,29,30)/t15-/m0/s1" 
VLE InChIKey         InChI                1.03  NEZLXNUXFYWZNP-HNNXBMFYSA-N                                                                                                                                                                     
VLE SMILES_CANONICAL CACTVS               3.385 "CCC(=O)N1CCN2[C@@H](CCOc3c(Cl)c(cc4ncnc2c34)c5c(C)ccc6n[nH]cc56)C1"                                                                                                                            
VLE SMILES           CACTVS               3.385 "CCC(=O)N1CCN2[CH](CCOc3c(Cl)c(cc4ncnc2c34)c5c(C)ccc6n[nH]cc56)C1"                                                                                                                              
VLE SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCC(=O)N1CCN2c3c4c(cc(c(c4OCC[C@H]2C1)Cl)c5c(ccc6c5c[nH]n6)C)ncn3"                                                                                                                             
VLE SMILES           "OpenEye OEToolkits" 2.0.7 "CCC(=O)N1CCN2c3c4c(cc(c(c4OCCC2C1)Cl)c5c(ccc6c5c[nH]n6)C)ncn3"                                                                                                                                 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
VLE "Create component" 2021-05-27 PDBE 
VLE "Initial release"  2022-04-20 RCSB 
VLE "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            VLE 
_pdbx_chem_comp_pcm.modified_residue_id                CYS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   SG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
