data_2LF
# 
_chem_comp.id                                    2LF 
_chem_comp.name                                  "(6S,7S,8S,10R)-2-amino-8-hydroxy-4-oxo-3,6,7,8,9,10-hexahydro-4H-7,10-epoxyazepino[1,2-e]purin-6-yl dihydrogen phosphate" 
_chem_comp.type                                  "DNA LINKING" 
_chem_comp.pdbx_type                             ATOMN 
_chem_comp.formula                               "C10 H12 N5 O7 P" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2011-07-21 
_chem_comp.pdbx_modified_date                    2011-12-30 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        345.205 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     2LF 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        2LFA 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
2LF P      P      P 0 1 N N N -7.375 -2.976 13.911 -3.332 1.388  0.068  P      2LF 1  
2LF N1     N1     N 0 1 N N N -0.405 -5.834 17.082 4.255  1.419  0.247  N1     2LF 2  
2LF C2     C2     C 0 1 N N N -1.074 -6.860 17.629 4.457  0.077  0.153  C2     2LF 3  
2LF N2     N2     N 0 1 N N N -0.393 -7.663 18.387 5.739  -0.395 0.278  N2     2LF 4  
2LF N3     N3     N 0 1 N N N -2.364 -7.099 17.483 3.488  -0.797 -0.052 N3     2LF 5  
2LF C4     C4     C 0 1 Y N N -2.958 -6.171 16.699 2.234  -0.338 -0.175 C4     2LF 6  
2LF C5     C5     C 0 1 Y N N -2.399 -5.076 16.084 1.961  1.046  -0.088 C5     2LF 7  
2LF C6     C6     C 0 1 N N N -0.983 -4.887 16.270 3.016  1.964  0.139  C6     2LF 8  
2LF O6     O6     O 0 1 N N N -0.227 -4.033 15.810 2.824  3.165  0.224  O6     2LF 9  
2LF N7     N7     N 0 1 Y N N -3.396 -4.364 15.378 0.636  1.211  -0.252 N7     2LF 10 
2LF C8     C8     C 0 1 Y N N -4.485 -5.049 15.627 0.083  0.052  -0.432 C8     2LF 11 
2LF N9     N9     N 0 1 Y N N -4.272 -6.173 16.356 1.046  -0.932 -0.380 N9     2LF 12 
2LF "C1'"  "C1'"  C 0 1 N N R -5.320 -7.094 16.795 0.695  -2.356 -0.531 "C1'"  2LF 13 
2LF OP3    OP3    O 0 1 N Y N -8.426 -4.000 13.729 -4.503 0.704  -0.799 OP3    2LF 14 
2LF "C2'"  "C2'"  C 0 1 N N N -6.004 -6.496 18.004 0.130  -2.798 0.845  "C2'"  2LF 15 
2LF OP2    OP2    O 0 1 N N N -7.758 -1.569 14.148 -3.936 1.913  1.465  OP2    2LF 16 
2LF "C3'"  "C3'"  C 0 1 N N S -6.985 -5.465 17.423 -1.347 -2.346 0.797  "C3'"  2LF 17 
2LF "O3'"  "O3'"  O 0 1 N N N -8.260 -5.758 17.965 -2.216 -3.457 1.028  "O3'"  2LF 18 
2LF "C4'"  "C4'"  C 0 1 N N S -6.896 -5.747 15.900 -1.537 -1.799 -0.629 "C4'"  2LF 19 
2LF "O4'"  "O4'"  O 0 1 N N N -6.352 -7.070 15.822 -0.452 -2.383 -1.421 "O4'"  2LF 20 
2LF "C5'"  "C5'"  C 0 1 N N S -5.912 -4.832 15.103 -1.373 -0.269 -0.677 "C5'"  2LF 21 
2LF "O5'"  "O5'"  O 0 1 N N N -6.358 -3.479 15.069 -2.175 0.306  0.356  "O5'"  2LF 22 
2LF HN1    HN1    H 0 1 N N N 0.573  -5.753 17.276 5.015  2.002  0.399  HN1    2LF 23 
2LF "H1'"  "H1'"  H 0 1 N N N -4.879 -8.086 16.973 1.526  -2.972 -0.876 "H1'"  2LF 24 
2LF "H2'"  "H2'"  H 0 1 N N N -5.276 -6.017 18.675 0.198  -3.880 0.958  "H2'"  2LF 25 
2LF "H'2'" "H'2'" H 0 0 N N N -6.535 -7.267 18.581 0.658  -2.295 1.656  "H'2'" 2LF 26 
2LF HN2    HN2    H 0 1 N N N 0.587  -7.513 18.521 5.914  -1.347 0.215  HN2    2LF 27 
2LF HN2A   HN2A   H 0 0 N N N -0.848 -8.432 18.837 6.471  0.224  0.429  HN2A   2LF 28 
2LF "H3'"  "H3'"  H 0 1 N N N -6.780 -4.407 17.644 -1.529 -1.563 1.533  "H3'"  2LF 29 
2LF "H4'"  "H4'"  H 0 1 N N N -7.892 -5.584 15.464 -2.506 -2.099 -1.029 "H4'"  2LF 30 
2LF "H5'"  "H5'"  H 0 1 N N N -5.895 -5.118 14.041 -1.680 0.127  -1.645 "H5'"  2LF 31 
2LF HOP3   HOP3   H 0 0 N N N -8.472 -4.248 12.813 -4.922 -0.053 -0.367 HOP3   2LF 32 
2LF HOP2   HOP2   H 0 0 N N N -7.581 -1.057 13.368 -4.640 2.569  1.368  HOP2   2LF 33 
2LF "HO3'" "HO3'" H 0 0 N Y N -8.898 -5.139 17.628 -2.101 -3.874 1.893  "HO3'" 2LF 34 
2LF OP1    OP1    O 0 1 N N N -6.912 -2.843 12.565 -2.764 2.530  -0.684 OP1    2LF 35 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
2LF P     OP2    SING N N 1  
2LF P     "O5'"  SING N N 2  
2LF N1    HN1    SING N N 3  
2LF N1    C2     SING N N 4  
2LF C2    N2     SING N N 5  
2LF N2    HN2A   SING N N 6  
2LF N2    HN2    SING N N 7  
2LF N3    C2     DOUB N N 8  
2LF C4    N3     SING N N 9  
2LF C5    C4     DOUB Y N 10 
2LF C5    C6     SING N N 11 
2LF C6    N1     SING N N 12 
2LF O6    C6     DOUB N N 13 
2LF N7    C5     SING Y N 14 
2LF N7    C8     DOUB Y N 15 
2LF C8    N9     SING Y N 16 
2LF N9    C4     SING Y N 17 
2LF N9    "C1'"  SING N N 18 
2LF "C1'" "H1'"  SING N N 19 
2LF "C1'" "C2'"  SING N N 20 
2LF OP3   P      SING N N 21 
2LF OP3   HOP3   SING N N 22 
2LF "C2'" "H'2'" SING N N 23 
2LF "C2'" "H2'"  SING N N 24 
2LF OP2   HOP2   SING N N 25 
2LF "C3'" "C2'"  SING N N 26 
2LF "C3'" "H3'"  SING N N 27 
2LF "C3'" "O3'"  SING N N 28 
2LF "O3'" "HO3'" SING N N 29 
2LF "C4'" "C3'"  SING N N 30 
2LF "O4'" "C1'"  SING N N 31 
2LF "O4'" "C4'"  SING N N 32 
2LF "C5'" C8     SING N N 33 
2LF "C5'" "C4'"  SING N N 34 
2LF "O5'" "C5'"  SING N N 35 
2LF "H4'" "C4'"  SING N N 36 
2LF "H5'" "C5'"  SING N N 37 
2LF P     OP1    DOUB N N 38 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
2LF SMILES           ACDLabs              12.01 "O=P(O)(O)OC3c2nc1C(=O)NC(=Nc1n2C4OC3C(O)C4)N"                                                                                                                 
2LF InChI            InChI                1.03  "InChI=1S/C10H12N5O7P/c11-10-13-7-4(9(17)14-10)12-8-6(22-23(18,19)20)5-2(16)1-3(21-5)15(7)8/h2-3,5-6,16H,1H2,(H2,18,19,20)(H3,11,13,14,17)/t2-,3+,5-,6+/m0/s1" 
2LF InChIKey         InChI                1.03  WUVBJPHCDIFJHL-YELPUOMLSA-N                                                                                                                                    
2LF SMILES_CANONICAL CACTVS               3.370 "NC1=Nc2n3[C@H]4C[C@H](O)[C@H](O4)[C@@H](O[P](O)(O)=O)c3nc2C(=O)N1"                                                                                            
2LF SMILES           CACTVS               3.370 "NC1=Nc2n3[CH]4C[CH](O)[CH](O4)[CH](O[P](O)(O)=O)c3nc2C(=O)N1"                                                                                                 
2LF SMILES_CANONICAL "OpenEye OEToolkits" 1.7.2 "C1[C@@H]([C@H]2[C@H](c3nc4c(n3[C@@H]1O2)N=C(NC4=O)N)OP(=O)(O)O)O"                                                                                             
2LF SMILES           "OpenEye OEToolkits" 1.7.2 "C1C(C2C(c3nc4c(n3C1O2)N=C(NC4=O)N)OP(=O)(O)O)O"                                                                                                               
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
2LF "SYSTEMATIC NAME" ACDLabs 12.01 "(6S,7S,8S,10R)-2-amino-8-hydroxy-4-oxo-3,6,7,8,9,10-hexahydro-4H-7,10-epoxyazepino[1,2-e]purin-6-yl dihydrogen phosphate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
2LF "Create component"      2011-07-21 RCSB 
2LF "Modify parent residue" 2011-07-27 RCSB 
# 
