data_48F
# 
_chem_comp.id                                    48F 
_chem_comp.name                                  "[[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [(2R,3R)-2,3,5-tris(oxidanyl)-4-oxidanylidene-pentyl] hydrogen phosphate" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C15 H23 N5 O14 P2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2015-02-12 
_chem_comp.pdbx_modified_date                    2016-03-04 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        559.316 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     48F 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        4Y4M 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
48F O1A   O1  O 0 1 N N N 65.460 -12.378 3.394  0.368  2.310  2.250  O1A   48F 1  
48F PA    P1  P 0 1 N N N 66.899 -12.840 3.258  0.630  2.534  0.677  PA    48F 2  
48F O2A   O2  O 0 1 N N N 67.753 -12.237 2.165  0.853  3.973  0.413  O2A   48F 3  
48F O3A   O3  O 0 1 N N N 67.552 -12.704 4.746  1.929  1.698  0.225  O3A   48F 4  
48F PB    P2  P 0 1 N N N 68.545 -11.583 5.379  3.514  1.900  0.425  PB    48F 5  
48F O1B   O4  O 0 1 N N N 69.988 -11.992 5.118  3.790  2.277  1.829  O1B   48F 6  
48F O5D   O5  O 0 1 N N N 68.248 -10.223 4.547  4.278  0.526  0.078  O5D   48F 7  
48F C5D   C1  C 0 1 N N N 67.070 -9.417  4.685  5.685  0.350  0.259  C5D   48F 8  
48F C4D   C2  C 0 1 N N R 67.054 -8.327  3.609  6.081  -1.065 -0.166 C4D   48F 9  
48F O4D   O6  O 0 1 N N N 67.056 -8.932  2.310  5.857  -1.222 -1.568 O4D   48F 10 
48F C3D   C3  C 0 1 N N R 65.837 -7.399  3.673  7.562  -1.295 0.143  C3D   48F 11 
48F C2D   C4  C 0 1 N N N 65.888 -6.428  4.838  7.952  -2.689 -0.275 C2D   48F 12 
48F C1D   C5  C 0 1 N N N 64.730 -6.331  5.833  8.247  -2.987 -1.722 C1D   48F 13 
48F O1D   O7  O 0 1 N N N 63.835 -5.214  5.640  8.590  -4.367 -1.864 O1D   48F 14 
48F O2D   O8  O 0 1 N N N 66.883 -5.719  4.985  8.029  -3.567 0.550  O2D   48F 15 
48F O3D   O9  O 0 1 N N N 64.641 -8.196  3.702  7.786  -1.138 1.546  O3D   48F 16 
48F O2B   O10 O 0 1 N N N 68.111 -11.480 6.827  4.035  3.065  -0.556 O2B   48F 17 
48F "O5'" O11 O 0 1 N N N 66.824 -14.442 3.137  -0.651 2.027  -0.157 "O5'" 48F 18 
48F "C5'" C6  C 0 1 N N N 67.926 -15.236 2.749  -1.936 2.644  -0.060 "C5'" 48F 19 
48F "C4'" C7  C 0 1 N N R 67.502 -16.576 2.133  -2.920 1.918  -0.980 "C4'" 48F 20 
48F "O4'" O12 O 0 1 N N N 66.840 -17.486 3.022  -3.141 0.581  -0.503 "O4'" 48F 21 
48F "C1'" C8  C 0 1 N N R 66.301 -18.484 2.138  -4.514 0.248  -0.799 "C1'" 48F 22 
48F "C2'" C9  C 0 1 N N R 65.577 -17.638 1.105  -5.280 1.559  -0.484 "C2'" 48F 23 
48F "O2'" O13 O 0 1 N N N 65.311 -18.367 -0.097 -6.501 1.627  -1.224 "O2'" 48F 24 
48F "C3'" C10 C 0 1 N N S 66.560 -16.488 0.926  -4.281 2.641  -0.965 "C3'" 48F 25 
48F "O3'" O14 O 0 1 N N N 67.347 -16.644 -0.254 -4.624 3.089  -2.278 "O3'" 48F 26 
48F N9    N1  N 0 1 Y N N 65.491 -19.481 2.873  -4.979 -0.840 0.064  N9    48F 27 
48F C8    C11 C 0 1 Y N N 64.389 -19.257 3.626  -4.471 -1.177 1.283  C8    48F 28 
48F N7    N2  N 0 1 Y N N 63.917 -20.431 4.158  -5.122 -2.192 1.771  N7    48F 29 
48F C5    C12 C 0 1 Y N N 64.738 -21.417 3.749  -6.087 -2.571 0.899  C5    48F 30 
48F C4    C13 C 0 1 Y N N 65.771 -20.784 2.900  -6.011 -1.705 -0.205 C4    48F 31 
48F C6    C14 C 0 1 Y N N 64.840 -22.880 3.936  -7.070 -3.576 0.887  C6    48F 32 
48F N6    N3  N 0 1 N N N 63.946 -23.534 4.704  -7.197 -4.454 1.948  N6    48F 33 
48F N1    N4  N 0 1 Y N N 65.852 -23.542 3.303  -7.875 -3.661 -0.167 N1    48F 34 
48F C2    C15 C 0 1 Y N N 66.772 -22.905 2.542  -7.761 -2.827 -1.184 C2    48F 35 
48F N3    N5  N 0 1 Y N N 66.731 -21.566 2.339  -6.865 -1.863 -1.211 N3    48F 36 
48F H1    H1  H 0 1 N N N 65.272 -11.726 2.729  0.214  1.388  2.496  H1    48F 37 
48F H2    H2  H 0 1 N N N 67.064 -8.947  5.680  6.223  1.076  -0.352 H2    48F 38 
48F H3    H3  H 0 1 N N N 66.179 -10.052 4.574  5.938  0.499  1.308  H3    48F 39 
48F H4    H4  H 0 1 N N N 67.959 -7.714  3.729  5.479  -1.790 0.382  H4    48F 40 
48F H5    H5  H 0 1 N N N 67.801 -9.517  2.234  6.362  -0.608 -2.118 H5    48F 41 
48F H6    H6  H 0 1 N N N 65.834 -6.803  2.749  8.164  -0.569 -0.405 H6    48F 42 
48F H7    H7  H 0 1 N N N 64.139 -7.256  5.756  7.365  -2.769 -2.325 H7    48F 43 
48F H8    H8  H 0 1 N N N 65.157 -6.252  6.843  9.079  -2.369 -2.059 H8    48F 44 
48F H9    H9  H 0 1 N N N 63.152 -5.237  6.300  8.793  -4.631 -2.772 H9    48F 45 
48F H10   H10 H 0 1 N N N 63.881 -7.627  3.742  7.281  -1.752 2.096  H10   48F 46 
48F H11   H11 H 0 1 N N N 68.842 -11.697 7.393  3.886  2.885  -1.494 H11   48F 47 
48F H12   H12 H 0 1 N N N 68.545 -15.436 3.636  -2.291 2.585  0.969  H12   48F 48 
48F H13   H13 H 0 1 N N N 68.517 -14.679 2.007  -1.862 3.689  -0.360 H13   48F 49 
48F H14   H14 H 0 1 N N N 68.422 -17.063 1.778  -2.525 1.889  -1.996 H14   48F 50 
48F H15   H15 H 0 1 N N N 67.128 -19.006 1.634  -4.626 -0.021 -1.849 H15   48F 51 
48F H16   H16 H 0 1 N N N 64.642 -17.253 1.539  -5.469 1.652  0.585  H16   48F 52 
48F H17   H17 H 0 1 N N N 64.694 -19.066 0.086  -7.015 2.429  -1.060 H17   48F 53 
48F H18   H18 H 0 1 N N N 66.026 -15.527 0.933  -4.261 3.478  -0.268 H18   48F 54 
48F H19   H19 H 0 1 N N N 67.947 -15.912 -0.334 -5.498 3.500  -2.337 H19   48F 55 
48F H20   H20 H 0 1 N N N 63.942 -18.287 3.786  -3.649 -0.675 1.771  H20   48F 56 
48F H21   H21 H 0 1 N N N 64.162 -24.510 4.710  -6.603 -4.381 2.712  H21   48F 57 
48F H22   H22 H 0 1 N N N 63.986 -23.178 5.638  -7.879 -5.143 1.929  H22   48F 58 
48F H23   H23 H 0 1 N N N 67.562 -23.481 2.083  -8.436 -2.932 -2.021 H23   48F 59 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
48F "O3'" "C3'" SING N N 1  
48F "O2'" "C2'" SING N N 2  
48F "C3'" "C2'" SING N N 3  
48F "C3'" "C4'" SING N N 4  
48F "C2'" "C1'" SING N N 5  
48F "C4'" "C5'" SING N N 6  
48F "C4'" "O4'" SING N N 7  
48F "C1'" N9    SING N N 8  
48F "C1'" "O4'" SING N N 9  
48F O2A   PA    DOUB N N 10 
48F O4D   C4D   SING N N 11 
48F N3    C2    DOUB Y N 12 
48F N3    C4    SING Y N 13 
48F C2    N1    SING Y N 14 
48F "C5'" "O5'" SING N N 15 
48F N9    C4    SING Y N 16 
48F N9    C8    SING Y N 17 
48F C4    C5    DOUB Y N 18 
48F "O5'" PA    SING N N 19 
48F PA    O1A   SING N N 20 
48F PA    O3A   SING N N 21 
48F N1    C6    DOUB Y N 22 
48F C4D   C3D   SING N N 23 
48F C4D   C5D   SING N N 24 
48F C8    N7    DOUB Y N 25 
48F C3D   O3D   SING N N 26 
48F C3D   C2D   SING N N 27 
48F C5    C6    SING Y N 28 
48F C5    N7    SING Y N 29 
48F C6    N6    SING N N 30 
48F O5D   C5D   SING N N 31 
48F O5D   PB    SING N N 32 
48F O3A   PB    SING N N 33 
48F C2D   O2D   DOUB N N 34 
48F C2D   C1D   SING N N 35 
48F O1B   PB    DOUB N N 36 
48F PB    O2B   SING N N 37 
48F O1D   C1D   SING N N 38 
48F O1A   H1    SING N N 39 
48F C5D   H2    SING N N 40 
48F C5D   H3    SING N N 41 
48F C4D   H4    SING N N 42 
48F O4D   H5    SING N N 43 
48F C3D   H6    SING N N 44 
48F C1D   H7    SING N N 45 
48F C1D   H8    SING N N 46 
48F O1D   H9    SING N N 47 
48F O3D   H10   SING N N 48 
48F O2B   H11   SING N N 49 
48F "C5'" H12   SING N N 50 
48F "C5'" H13   SING N N 51 
48F "C4'" H14   SING N N 52 
48F "C1'" H15   SING N N 53 
48F "C2'" H16   SING N N 54 
48F "O2'" H17   SING N N 55 
48F "C3'" H18   SING N N 56 
48F "O3'" H19   SING N N 57 
48F C8    H20   SING N N 58 
48F N6    H21   SING N N 59 
48F N6    H22   SING N N 60 
48F C2    H23   SING N N 61 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
48F SMILES           ACDLabs              12.01 "O=C(CO)C(O)C(O)COP(=O)(O)OP(=O)(O)OCC3OC(n2cnc1c(ncnc12)N)C(O)C3O" 
48F InChI            InChI                1.03  
"InChI=1S/C15H23N5O14P2/c16-13-9-14(18-4-17-13)20(5-19-9)15-12(26)11(25)8(33-15)3-32-36(29,30)34-35(27,28)31-2-7(23)10(24)6(22)1-21/h4-5,7-8,10-12,15,21,23-26H,1-3H2,(H,27,28)(H,29,30)(H2,16,17,18)/t7-,8-,10+,11-,12-,15-/m1/s1" 
48F InChIKey         InChI                1.03  HMVGRTYSZXZGQZ-GHVQHMAVSA-N 
48F SMILES_CANONICAL CACTVS               3.385 "Nc1ncnc2n(cnc12)[C@@H]3O[C@H](CO[P](O)(=O)O[P](O)(=O)OC[C@@H](O)[C@@H](O)C(=O)CO)[C@@H](O)[C@H]3O" 
48F SMILES           CACTVS               3.385 "Nc1ncnc2n(cnc12)[CH]3O[CH](CO[P](O)(=O)O[P](O)(=O)OC[CH](O)[CH](O)C(=O)CO)[CH](O)[CH]3O" 
48F SMILES_CANONICAL "OpenEye OEToolkits" 1.9.2 "c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)COP(=O)(O)OP(=O)(O)OC[C@H]([C@H](C(=O)CO)O)O)O)O)N" 
48F SMILES           "OpenEye OEToolkits" 1.9.2 "c1nc(c2c(n1)n(cn2)C3C(C(C(O3)COP(=O)(O)OP(=O)(O)OCC(C(C(=O)CO)O)O)O)O)N" 
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
48F "SYSTEMATIC NAME" ACDLabs              12.01 "[(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-3,4-dihydroxytetrahydrofuran-2-yl]methyl (2R,3R)-2,3,5-trihydroxy-4-oxopentyl dihydrogen diphosphate (non-preferred name)"       
48F "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.9.2 "[[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [(2R,3R)-2,3,5-tris(oxidanyl)-4-oxidanylidene-pentyl] hydrogen phosphate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
48F "Other modification" 2015-02-12 RCSB 
48F "Initial release"    2016-03-09 RCSB 
# 
