data_4MF
# 
_chem_comp.id                                    4MF 
_chem_comp.name                                  "1-(2-DEOXY-5-O-PHOSPHONO-BETA-D-ERYTHRO-PENTOFURANOSYL)-4-METHYL-1H-INDOLE" 
_chem_comp.type                                  "DNA LINKING" 
_chem_comp.pdbx_type                             ATOMN 
_chem_comp.formula                               "C14 H18 N O6 P" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2007-03-16 
_chem_comp.pdbx_modified_date                    2011-06-04 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        327.270 
_chem_comp.one_letter_code                       N 
_chem_comp.three_letter_code                     4MF 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        "OpenEye OEToolkits" 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        ? 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
4MF O3P    O3P  O 0 1 N Y N -1.754 -2.822 -23.434 0.339  -0.227 -4.868 O3P    4MF 1  
4MF O2P    O2P  O 0 1 N N N -0.830 -4.701 -23.874 0.886  -2.697 -5.051 O2P    4MF 2  
4MF P      P    P 0 1 N N N -2.133 -4.347 -23.209 1.592  -1.245 -4.964 P      4MF 3  
4MF O1P    O1P  O 0 1 N N N -3.441 -4.407 -23.957 2.575  -0.951 -6.059 O1P    4MF 4  
4MF "O5'"  O5*  O 0 1 N N N -2.273 -5.251 -21.880 2.211  -1.232 -3.468 "O5'"  4MF 5  
4MF "C5'"  C5*  C 0 1 N N N -2.804 -4.709 -20.672 1.348  -1.500 -2.377 "C5'"  4MF 6  
4MF "C4'"  C4*  C 0 1 N N R -4.324 -4.877 -20.528 2.156  -1.432 -1.088 "C4'"  4MF 7  
4MF "C3'"  C3*  C 0 1 N N S -5.014 -5.783 -21.538 1.309  -1.697 0.152  "C3'"  4MF 8  
4MF "O3'"  O3*  O 0 1 N N N -5.183 -7.086 -20.990 2.127  -2.250 1.180  "O3'"  4MF 9  
4MF "C2'"  C2*  C 0 1 N N N -6.376 -5.166 -21.819 0.878  -0.312 0.578  "C2'"  4MF 10 
4MF "C1'"  C1*  C 0 1 N N R -6.327 -3.804 -21.133 2.101  0.516  0.211  "C1'"  4MF 11 
4MF "O4'"  O4*  O 0 1 N N N -4.988 -3.610 -20.660 2.678  -0.093 -0.958 "O4'"  4MF 12 
4MF N1     N1   N 0 1 Y N N -6.624 -2.783 -22.129 1.818  1.923  -0.049 N1     4MF 13 
4MF C7A    C7A  C 0 1 Y N N -7.134 -1.592 -21.893 1.892  2.946  0.877  C7A    4MF 14 
4MF C7     C7   C 0 1 Y N N -7.511 -0.950 -20.876 2.239  2.908  2.232  C7     4MF 15 
4MF C6     C6   C 0 1 Y N N -7.823 0.199  -21.023 2.229  4.116  2.935  C6     4MF 16 
4MF C5     C5   C 0 1 Y N N -8.031 0.699  -22.101 1.884  5.311  2.307  C5     4MF 17 
4MF C4     C4   C 0 1 Y N N -7.681 0.140  -23.189 1.539  5.333  0.950  C4     4MF 18 
4MF C4M    C4M  C 0 1 N N N -7.799 0.755  -24.356 1.177  6.645  0.330  C4M    4MF 19 
4MF C3A    C3A  C 0 1 Y N N -7.199 -1.092 -23.071 1.543  4.128  0.220  C3A    4MF 20 
4MF C3     C3   C 0 1 Y N N -6.765 -1.912 -23.925 1.255  3.786  -1.131 C3     4MF 21 
4MF C2     C2   C 0 1 Y N N -6.425 -2.920 -23.332 1.433  2.429  -1.266 C2     4MF 22 
4MF HOP3   3HOP H 0 0 N N N -1.678 -2.387 -22.593 -0.163 -0.014 -5.684 HOP3   4MF 23 
4MF HOP2   2HOP H 0 0 N N N -0.963 -4.776 -24.812 0.508  -2.990 -5.907 HOP2   4MF 24 
4MF "H5'1" 1H5* H 0 0 N N N -2.323 -5.225 -19.828 0.551  -0.756 -2.359 "H5'1" 4MF 25 
4MF "H5'2" 2H5* H 0 0 N N N -2.600 -3.628 -20.688 0.917  -2.495 -2.497 "H5'2" 4MF 26 
4MF "H4'"  H4*  H 0 1 N N N -4.411 -5.341 -19.534 3.008  -2.117 -1.157 "H4'"  4MF 27 
4MF "H3'"  H3*  H 0 1 N N N -4.417 -5.874 -22.458 0.475  -2.383 -0.018 "H3'"  4MF 28 
4MF H3T    H3T  H 0 1 N Y N -5.221 -7.723 -21.693 2.928  -1.706 1.218  H3T    4MF 29 
4MF "H2'1" 1H2* H 0 0 N N N -6.549 -5.060 -22.900 0.008  0.008  -0.009 "H2'1" 4MF 30 
4MF "H2'2" 2H2* H 0 0 N N N -7.201 -5.791 -21.446 0.635  -0.225 1.641  "H2'2" 4MF 31 
4MF "H1'"  H1*  H 0 1 N N N -7.048 -3.746 -20.304 2.853  0.503  1.007  "H1'"  4MF 32 
4MF H7     H7   H 0 1 N N N -7.552 -1.419 -19.904 2.508  1.981  2.726  H7     4MF 33 
4MF H6     H6   H 0 1 N N N -7.923 0.818  -20.144 2.494  4.122  3.990  H6     4MF 34 
4MF H5     H5   H 0 1 N N N -8.532 1.655  -22.144 1.886  6.232  2.884  H5     4MF 35 
4MF H4M1   1H4M H 0 0 N N N -7.832 1.843  -24.196 0.922  6.506  -0.726 H4M1   4MF 36 
4MF H4M2   2H4M H 0 0 N N N -6.937 0.504  -24.992 0.321  7.100  0.841  H4M2   4MF 37 
4MF H4M3   3H4M H 0 0 N N N -8.726 0.429  -24.850 2.009  7.357  0.400  H4M3   4MF 38 
4MF H3     H3   H 0 1 N N N -6.705 -1.750 -24.991 0.952  4.459  -1.921 H3     4MF 39 
4MF H2     H2   H 0 1 N N N -6.010 -3.803 -23.796 1.318  1.781  -2.125 H2     4MF 40 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
4MF O3P   P      SING N N 1  
4MF O3P   HOP3   SING N N 2  
4MF O2P   P      SING N N 3  
4MF O2P   HOP2   SING N N 4  
4MF P     O1P    DOUB N N 5  
4MF P     "O5'"  SING N N 6  
4MF "O5'" "C5'"  SING N N 7  
4MF "C5'" "C4'"  SING N N 8  
4MF "C5'" "H5'1" SING N N 9  
4MF "C5'" "H5'2" SING N N 10 
4MF "C4'" "C3'"  SING N N 11 
4MF "C4'" "O4'"  SING N N 12 
4MF "C4'" "H4'"  SING N N 13 
4MF "C3'" "C2'"  SING N N 14 
4MF "C3'" "O3'"  SING N N 15 
4MF "C3'" "H3'"  SING N N 16 
4MF "O3'" H3T    SING N N 17 
4MF "C2'" "C1'"  SING N N 18 
4MF "C2'" "H2'1" SING N N 19 
4MF "C2'" "H2'2" SING N N 20 
4MF "C1'" N1     SING N N 21 
4MF "C1'" "O4'"  SING N N 22 
4MF "C1'" "H1'"  SING N N 23 
4MF N1    C2     SING Y N 24 
4MF N1    C7A    SING Y N 25 
4MF C7A   C3A    SING Y N 26 
4MF C7A   C7     DOUB Y N 27 
4MF C7    C6     SING Y N 28 
4MF C7    H7     SING N N 29 
4MF C6    C5     DOUB Y N 30 
4MF C6    H6     SING N N 31 
4MF C5    C4     SING Y N 32 
4MF C5    H5     SING N N 33 
4MF C4    C4M    SING N N 34 
4MF C4    C3A    DOUB Y N 35 
4MF C4M   H4M1   SING N N 36 
4MF C4M   H4M2   SING N N 37 
4MF C4M   H4M3   SING N N 38 
4MF C3A   C3     SING Y N 39 
4MF C3    C2     DOUB Y N 40 
4MF C3    H3     SING N N 41 
4MF C2    H2     SING N N 42 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
4MF SMILES           ACDLabs              10.04 "O=P(O)(O)OCC3OC(n2ccc1c(cccc12)C)CC3O"                                                                                                           
4MF SMILES_CANONICAL CACTVS               3.341 "Cc1cccc2n(ccc12)[C@H]3C[C@H](O)[C@@H](CO[P](O)(O)=O)O3"                                                                                          
4MF SMILES           CACTVS               3.341 "Cc1cccc2n(ccc12)[CH]3C[CH](O)[CH](CO[P](O)(O)=O)O3"                                                                                              
4MF SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "Cc1cccc2c1ccn2[C@H]3C[C@@H]([C@H](O3)COP(=O)(O)O)O"                                                                                              
4MF SMILES           "OpenEye OEToolkits" 1.5.0 "Cc1cccc2c1ccn2C3CC(C(O3)COP(=O)(O)O)O"                                                                                                           
4MF InChI            InChI                1.03  "InChI=1S/C14H18NO6P/c1-9-3-2-4-11-10(9)5-6-15(11)14-7-12(16)13(21-14)8-20-22(17,18)19/h2-6,12-14,16H,7-8H2,1H3,(H2,17,18,19)/t12-,13+,14+/m0/s1" 
4MF InChIKey         InChI                1.03  UXXYPWCUINVUHL-BFHYXJOUSA-N                                                                                                                       
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
4MF "SYSTEMATIC NAME" ACDLabs              10.04 "1-(2-deoxy-5-O-phosphono-beta-D-erythro-pentofuranosyl)-4-methyl-1H-indole"          
4MF "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[(2R,3S,5R)-3-hydroxy-5-(4-methylindol-1-yl)oxolan-2-yl]methyl dihydrogen phosphate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
4MF "Create component"  2007-03-16 RCSB 
4MF "Modify descriptor" 2011-06-04 RCSB 
# 
