data_5CF
# 
_chem_comp.id                                    5CF 
_chem_comp.name                                  
;5-fluorocytidine 5'-(dihydrogen phosphate)
;
_chem_comp.type                                  "RNA LINKING" 
_chem_comp.pdbx_type                             ATOMN 
_chem_comp.formula                               "C9 H13 F N3 O8 P" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2009-10-05 
_chem_comp.pdbx_modified_date                    2011-06-04 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        341.187 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     5CF 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        3JXR 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
5CF OP3    OP3    O 0 1 N Y N 17.385 7.462 0.708  -4.850 1.915  -1.416 OP3    5CF 1  
5CF P      P      P 0 1 N N N 16.529 7.170 -0.602 -4.335 1.068  -0.148 P      5CF 2  
5CF N1     N1     N 0 1 N N N 12.670 4.555 1.790  2.135  -0.149 -0.239 N1     5CF 3  
5CF C2     C2     C 0 1 N N N 11.374 4.310 2.292  2.005  0.724  0.776  C2     5CF 4  
5CF O2     O2     O 0 1 N N N 11.051 3.143 2.589  0.985  0.717  1.446  O2     5CF 5  
5CF N3     N3     N 0 1 N N N 10.557 5.387 2.402  2.970  1.596  1.062  N3     5CF 6  
5CF C4     C4     C 0 1 N N N 10.898 6.610 2.071  4.089  1.626  0.351  C4     5CF 7  
5CF N4     N4     N 0 1 N N N 10.027 7.628 2.224  5.080  2.531  0.658  N4     5CF 8  
5CF C5     C5     C 0 1 N N N 12.227 6.828 1.557  4.259  0.724  -0.721 C5     5CF 9  
5CF F5     F5     F 0 1 N N N 12.539 8.024 1.036  5.392  0.738  -1.457 F5     5CF 10 
5CF C6     C6     C 0 1 N N N 13.054 5.801 1.413  3.268  -0.157 -1.000 C6     5CF 11 
5CF "C1'"  "C1'"  C 0 1 N N R 13.606 3.437 1.685  1.059  -1.100 -0.525 "C1'"  5CF 12 
5CF "C2'"  "C2'"  C 0 1 N N R 13.389 2.562 0.489  0.844  -2.059 0.674  "C2'"  5CF 13 
5CF "O2'"  "O2'"  O 0 1 N N N 13.822 1.277 0.789  1.724  -3.182 0.593  "O2'"  5CF 14 
5CF "C3'"  "C3'"  C 0 1 N N S 14.229 3.303 -0.507 -0.629 -2.495 0.480  "C3'"  5CF 15 
5CF "O3'"  "O3'"  O 0 1 N N N 14.461 2.524 -1.601 -0.693 -3.762 -0.178 "O3'"  5CF 16 
5CF "C4'"  "C4'"  C 0 1 N N R 15.469 3.513 0.352  -1.236 -1.393 -0.409 "C4'"  5CF 17 
5CF "O4'"  "O4'"  O 0 1 N N N 14.932 3.917 1.610  -0.207 -0.415 -0.644 "O4'"  5CF 18 
5CF "C5'"  "C5'"  C 0 1 N N N 16.402 4.603 -0.124 -2.422 -0.742 0.305  "C5'"  5CF 19 
5CF "O5'"  "O5'"  O 0 1 N N N 15.731 5.851 -0.307 -3.049 0.196  -0.572 "O5'"  5CF 20 
5CF OP1    OP1    O 0 1 N N N 15.474 8.197 -0.722 -3.932 2.075  1.042  OP1    5CF 21 
5CF OP2    OP2    O 0 1 N N N 17.493 6.957 -1.674 -5.413 0.165  0.314  OP2    5CF 22 
5CF HOP3   HOP3   H 0 0 N Y N 18.310 7.431 0.496  -5.625 2.465  -1.234 HOP3   5CF 23 
5CF HN4    HN4    H 0 1 N N N 9.114  7.454 2.592  4.960  3.150  1.395  HN4    5CF 24 
5CF HN4A   HN4A   H 0 0 N N N 10.294 8.557 1.969  5.897  2.551  0.136  HN4A   5CF 25 
5CF H6     H6     H 0 1 N N N 14.037 5.957 0.994  3.374  -0.858 -1.814 H6     5CF 26 
5CF "H1'"  "H1'"  H 0 1 N N N 13.428 2.834 2.588  1.277  -1.664 -1.433 "H1'"  5CF 27 
5CF "H2'"  "H2'"  H 0 1 N N N 12.359 2.407 0.135  0.973  -1.533 1.620  "H2'"  5CF 28 
5CF "HO2'" "HO2'" H 0 0 N N N 13.689 0.713 0.036  1.627  -3.811 1.321  "HO2'" 5CF 29 
5CF "H3'"  "H3'"  H 0 1 N N N 13.807 4.226 -0.931 -1.143 -2.537 1.440  "H3'"  5CF 30 
5CF "HO3'" "HO3'" H 0 0 N N N 14.994 3.004 -2.225 -0.273 -4.482 0.312  "HO3'" 5CF 31 
5CF "H4'"  "H4'"  H 0 1 N N N 16.076 2.596 0.349  -1.561 -1.820 -1.358 "H4'"  5CF 32 
5CF "H5'"  "H5'"  H 0 1 N N N 17.193 4.739 0.628  -3.141 -1.510 0.590  "H5'"  5CF 33 
5CF "H5'A" "H5'A" H 0 0 N N N 16.836 4.295 -1.087 -2.069 -0.225 1.198  "H5'A" 5CF 34 
5CF HOP1   HOP1   H 0 0 N N N 15.555 8.638 -1.559 -3.229 2.697  0.809  HOP1   5CF 35 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
5CF P     OP3    SING N N 1  
5CF OP3   HOP3   SING N N 2  
5CF OP2   P      DOUB N N 3  
5CF OP1   P      SING N N 4  
5CF P     "O5'"  SING N N 5  
5CF C6    N1     SING N N 6  
5CF "C1'" N1     SING N N 7  
5CF N1    C2     SING N N 8  
5CF C2    N3     SING N N 9  
5CF C2    O2     DOUB N N 10 
5CF C4    N3     DOUB N N 11 
5CF C5    C4     SING N N 12 
5CF C4    N4     SING N N 13 
5CF N4    HN4    SING N N 14 
5CF N4    HN4A   SING N N 15 
5CF F5    C5     SING N N 16 
5CF C6    C5     DOUB N N 17 
5CF C6    H6     SING N N 18 
5CF "C2'" "C1'"  SING N N 19 
5CF "O4'" "C1'"  SING N N 20 
5CF "C1'" "H1'"  SING N N 21 
5CF "C3'" "C2'"  SING N N 22 
5CF "C2'" "O2'"  SING N N 23 
5CF "C2'" "H2'"  SING N N 24 
5CF "O2'" "HO2'" SING N N 25 
5CF "O3'" "C3'"  SING N N 26 
5CF "C3'" "C4'"  SING N N 27 
5CF "C3'" "H3'"  SING N N 28 
5CF "O3'" "HO3'" SING N N 29 
5CF "C5'" "C4'"  SING N N 30 
5CF "C4'" "O4'"  SING N N 31 
5CF "C4'" "H4'"  SING N N 32 
5CF "O5'" "C5'"  SING N N 33 
5CF "C5'" "H5'"  SING N N 34 
5CF "C5'" "H5'A" SING N N 35 
5CF OP1   HOP1   SING N N 36 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
5CF SMILES           ACDLabs              11.02 "O=P(O)(O)OCC2OC(N1C(=O)N=C(N)C(F)=C1)C(O)C2O"                                                                                                         
5CF SMILES_CANONICAL CACTVS               3.352 "NC1=NC(=O)N(C=C1F)[C@@H]2O[C@H](CO[P](O)(O)=O)[C@@H](O)[C@H]2O"                                                                                       
5CF SMILES           CACTVS               3.352 "NC1=NC(=O)N(C=C1F)[CH]2O[CH](CO[P](O)(O)=O)[CH](O)[CH]2O"                                                                                             
5CF SMILES_CANONICAL "OpenEye OEToolkits" 1.7.0 "C1=C(C(=NC(=O)N1[C@H]2[C@@H]([C@@H]([C@H](O2)COP(=O)(O)O)O)O)N)F"                                                                                     
5CF SMILES           "OpenEye OEToolkits" 1.7.0 "C1=C(C(=NC(=O)N1C2C(C(C(O2)COP(=O)(O)O)O)O)N)F"                                                                                                       
5CF InChI            InChI                1.03  "InChI=1S/C9H13FN3O8P/c10-3-1-13(9(16)12-7(3)11)8-6(15)5(14)4(21-8)2-20-22(17,18)19/h1,4-6,8,14-15H,2H2,(H2,11,12,16)(H2,17,18,19)/t4-,5-,6-,8-/m1/s1" 
5CF InChIKey         InChI                1.03  VLZKLBLFWAHHJM-UAKXSSHOSA-N                                                                                                                            
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
5CF "SYSTEMATIC NAME" ACDLabs              11.02 
;5-fluorocytidine 5'-(dihydrogen phosphate)
;
5CF "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.6.1 "[(2R,3S,4R,5R)-5-(4-azanyl-5-fluoro-2-oxo-pyrimidin-1-yl)-3,4-dihydroxy-oxolan-2-yl]methyl dihydrogen phosphate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
5CF "Create component"  2009-10-05 RCSB 
5CF "Modify descriptor" 2011-06-04 RCSB 
# 
