data_5GF
# 
_chem_comp.id                                    5GF 
_chem_comp.name                                  5-fluoro-beta-D-glucopyranose 
_chem_comp.type                                  "D-saccharide, beta linking" 
_chem_comp.pdbx_type                             ATOMS 
_chem_comp.formula                               "C6 H11 F O6" 
_chem_comp.mon_nstd_parent_comp_id               BGC 
_chem_comp.pdbx_synonyms                         "5-fluoro-beta-D-glucose; 5-fluoro-D-glucose; 5-fluoro-glucose" 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2012-09-09 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        198.146 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     5GF 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        4BA0 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  EBI 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_pdbx_chem_comp_synonyms.ordinal 
_pdbx_chem_comp_synonyms.comp_id 
_pdbx_chem_comp_synonyms.name 
_pdbx_chem_comp_synonyms.provenance 
_pdbx_chem_comp_synonyms.type 
1 5GF 5-fluoro-beta-D-glucose PDB ? 
2 5GF 5-fluoro-D-glucose      PDB ? 
3 5GF 5-fluoro-glucose        PDB ? 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
5GF O5  O5  O 0 1 N N N N N N 29.917 78.994 35.776 0.248  -1.401 0.098  O5  5GF 1  
5GF C1  C1  C 0 1 N N R N N N 28.934 78.547 34.828 -1.131 -1.232 -0.238 C1  5GF 2  
5GF F   F   F 0 1 N N N N N N 29.915 80.840 37.044 0.999  -0.275 -1.773 F   5GF 3  
5GF C2  C2  C 0 1 N N R N N N 27.620 79.358 34.765 -1.652 0.064  0.388  C2  5GF 4  
5GF O2  O2  O 0 1 N N N N N N 27.563 80.180 33.591 -3.014 0.266  0.005  O2  5GF 5  
5GF C3  C3  C 0 1 N N R N N N 27.367 80.214 35.997 -0.803 1.239  -0.107 C3  5GF 6  
5GF O3  O3  O 0 1 N N N N N N 25.954 80.370 36.195 -1.235 2.443  0.529  O3  5GF 7  
5GF C4  C4  C 0 1 N N S N N N 27.991 79.516 37.192 0.666  0.975  0.241  C4  5GF 8  
5GF O4  O4  O 0 1 N N N N N N 27.579 80.161 38.404 1.477  2.030  -0.280 O4  5GF 9  
5GF C6  C6  C 0 1 N N N N N N 30.212 78.860 38.183 2.546  -0.656 0.013  C6  5GF 10 
5GF O6  O6  O 0 1 N N N N N N 29.874 77.473 38.200 2.646  -0.738 1.436  O6  5GF 11 
5GF C5  C5  C 0 1 N N S N N N 29.511 79.571 37.027 1.098  -0.356 -0.380 C5  5GF 12 
5GF O1  O1  O 0 1 N Y N N N N 28.696 77.243 35.000 -1.883 -2.339 0.262  O1  5GF 13 
5GF H1  H1  H 0 1 N N N N N N 29.391 78.669 33.835 -1.237 -1.180 -1.322 H1  5GF 14 
5GF H2  H2  H 0 1 N N N N N N 26.800 78.627 34.709 -1.585 -0.003 1.474  H2  5GF 15 
5GF HO1 HO1 H 0 1 N Y N N N N 28.046 76.954 34.371 -1.606 -3.195 -0.092 HO1 5GF 16 
5GF HO2 HO2 H 0 1 N Y N N N N 26.746 80.664 33.582 -3.609 -0.444 0.282  HO2 5GF 17 
5GF H3  H3  H 0 1 N N N N N N 27.845 81.195 35.860 -0.911 1.338  -1.187 H3  5GF 18 
5GF HO3 HO3 H 0 1 N Y N N N N 25.799 80.905 36.965 -2.160 2.668  0.357  HO3 5GF 19 
5GF H4  H4  H 0 1 N N N N N N 27.673 78.463 37.197 0.781  0.928  1.324  H4  5GF 20 
5GF HO4 HO4 H 0 1 N Y N N N N 27.973 79.720 39.148 1.255  2.905  0.067  HO4 5GF 21 
5GF H61 H61 H 0 1 N N N N N N 29.900 79.320 39.132 3.194  0.141  -0.352 H61 5GF 22 
5GF H62 H62 H 0 1 N N N N N N 31.301 78.965 38.065 2.852  -1.605 -0.428 H62 5GF 23 
5GF HO6 HO6 H 0 1 N Y N N N N 30.318 77.047 38.924 3.538  -0.927 1.757  HO6 5GF 24 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
5GF O5 C1  SING N N 1  
5GF O5 C5  SING N N 2  
5GF C1 C2  SING N N 3  
5GF C1 O1  SING N N 4  
5GF F  C5  SING N N 5  
5GF C2 O2  SING N N 6  
5GF C2 C3  SING N N 7  
5GF C3 O3  SING N N 8  
5GF C3 C4  SING N N 9  
5GF C4 O4  SING N N 10 
5GF C4 C5  SING N N 11 
5GF C6 O6  SING N N 12 
5GF C6 C5  SING N N 13 
5GF C1 H1  SING N N 14 
5GF C2 H2  SING N N 15 
5GF O1 HO1 SING N N 16 
5GF O2 HO2 SING N N 17 
5GF C3 H3  SING N N 18 
5GF O3 HO3 SING N N 19 
5GF C4 H4  SING N N 20 
5GF O4 HO4 SING N N 21 
5GF C6 H61 SING N N 22 
5GF C6 H62 SING N N 23 
5GF O6 HO6 SING N N 24 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
5GF SMILES           ACDLabs              12.01 "FC1(OC(O)C(O)C(O)C1O)CO"                                                                 
5GF InChI            InChI                1.03  "InChI=1S/C6H11FO6/c7-6(1-8)4(11)2(9)3(10)5(12)13-6/h2-5,8-12H,1H2/t2-,3-,4+,5-,6-/m1/s1" 
5GF InChIKey         InChI                1.03  YQZCKDSOGGIGPL-VFUOTHLCSA-N                                                               
5GF SMILES_CANONICAL CACTVS               3.385 "OC[C@@]1(F)O[C@@H](O)[C@H](O)[C@@H](O)[C@@H]1O"                                          
5GF SMILES           CACTVS               3.385 "OC[C]1(F)O[CH](O)[CH](O)[CH](O)[CH]1O"                                                   
5GF SMILES_CANONICAL "OpenEye OEToolkits" 1.9.2 "C([C@@]1([C@H]([C@@H]([C@H]([C@@H](O1)O)O)O)O)F)O"                                       
5GF SMILES           "OpenEye OEToolkits" 1.9.2 "C(C1(C(C(C(C(O1)O)O)O)O)F)O"                                                             
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
5GF "SYSTEMATIC NAME" ACDLabs              12.01 "(2R,3R,4R,5S,6S)-6-fluoro-6-(hydroxymethyl)tetrahydro-2H-pyran-2,3,4,5-tetrol (non-preferred name)" 
5GF "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.9.2 "(2R,3R,4R,5S,6S)-6-fluoranyl-6-(hydroxymethyl)oxane-2,3,4,5-tetrol"                                 
# 
_pdbx_chem_comp_related.comp_id             5GF 
_pdbx_chem_comp_related.related_comp_id     BGC 
_pdbx_chem_comp_related.relationship_type   "Carbohydrate core" 
_pdbx_chem_comp_related.details             ? 
# 
loop_
_pdbx_chem_comp_atom_related.ordinal 
_pdbx_chem_comp_atom_related.comp_id 
_pdbx_chem_comp_atom_related.atom_id 
_pdbx_chem_comp_atom_related.related_comp_id 
_pdbx_chem_comp_atom_related.related_atom_id 
_pdbx_chem_comp_atom_related.related_type 
1  5GF C1  BGC C1  "Carbohydrate core" 
2  5GF C2  BGC C2  "Carbohydrate core" 
3  5GF C3  BGC C3  "Carbohydrate core" 
4  5GF C4  BGC C4  "Carbohydrate core" 
5  5GF C5  BGC C5  "Carbohydrate core" 
6  5GF C6  BGC C6  "Carbohydrate core" 
7  5GF O1  BGC O1  "Carbohydrate core" 
8  5GF O2  BGC O2  "Carbohydrate core" 
9  5GF O3  BGC O3  "Carbohydrate core" 
10 5GF O4  BGC O4  "Carbohydrate core" 
11 5GF O5  BGC O5  "Carbohydrate core" 
12 5GF O6  BGC O6  "Carbohydrate core" 
13 5GF H1  BGC H1  "Carbohydrate core" 
14 5GF H2  BGC H2  "Carbohydrate core" 
15 5GF H3  BGC H3  "Carbohydrate core" 
16 5GF H4  BGC H4  "Carbohydrate core" 
17 5GF H61 BGC H61 "Carbohydrate core" 
18 5GF H62 BGC H62 "Carbohydrate core" 
19 5GF HO1 BGC HO1 "Carbohydrate core" 
20 5GF HO2 BGC HO2 "Carbohydrate core" 
21 5GF HO3 BGC HO3 "Carbohydrate core" 
22 5GF HO4 BGC HO4 "Carbohydrate core" 
23 5GF HO6 BGC HO6 "Carbohydrate core" 
# 
loop_
_pdbx_chem_comp_feature.comp_id 
_pdbx_chem_comp_feature.type 
_pdbx_chem_comp_feature.value 
_pdbx_chem_comp_feature.source 
_pdbx_chem_comp_feature.support 
5GF "CARBOHYDRATE ISOMER"                 D        PDB ? 
5GF "CARBOHYDRATE RING"                   pyranose PDB ? 
5GF "CARBOHYDRATE ANOMER"                 beta     PDB ? 
5GF "CARBOHYDRATE PRIMARY CARBONYL GROUP" aldose   PDB ? 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
5GF "Create component"         2012-09-09 EBI  
5GF "Modify name"              2012-09-10 EBI  
5GF "Initial release"          2012-11-09 RCSB 
5GF "Modify descriptor"        2014-09-05 RCSB 
5GF "Other modification"       2020-07-03 RCSB 
5GF "Modify parent residue"    2020-07-17 RCSB 
5GF "Modify name"              2020-07-17 RCSB 
5GF "Modify synonyms"          2020-07-17 RCSB 
5GF "Modify linking type"      2020-07-17 RCSB 
5GF "Modify leaving atom flag" 2020-07-17 RCSB 
5GF "Modify PCM"               2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            5GF 
_pdbx_chem_comp_pcm.modified_residue_id                ASP 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           Carbohydrate 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C1 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   OD2 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
