data_5NF
# 
_chem_comp.id                                    5NF 
_chem_comp.name                                  "(3S,4S,5S,8S)-8-[(2S)-butan-2-yl]-3-methyl-3,4-bis(oxidanyl)-1-oxa-7,10-diazaspiro[4.5]decane-6,9-dione" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C12 H20 N2 O5" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2021-08-23 
_chem_comp.pdbx_modified_date                    2023-02-10 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        272.298 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     5NF 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7V34 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBJ 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
5NF C1  C1  C 0 1 N N N 39.161 40.451 69.624 -2.063 -1.217 -1.210 C1  5NF 1  
5NF C2  C2  C 0 1 N N S 40.475 41.224 69.681 -3.084 -0.474 -0.319 C2  5NF 2  
5NF C3  C3  C 0 1 N N S 40.157 42.415 70.716 -2.217 0.498  0.514  C3  5NF 3  
5NF C4  C4  C 0 1 N N S 38.685 42.146 71.187 -0.779 0.229  0.025  C4  5NF 4  
5NF C5  C5  C 0 1 N N N 37.554 43.010 70.553 -0.115 -0.768 0.923  C5  5NF 5  
5NF C6  C6  C 0 1 N N N 37.455 42.531 73.362 1.251  1.570  0.312  C6  5NF 6  
5NF C10 C7  C 0 1 N N N 35.445 40.556 72.280 3.727  -1.332 0.151  C10 5NF 7  
5NF C11 C8  C 0 1 N N N 34.489 39.433 72.696 4.504  -1.935 -1.020 C11 5NF 8  
5NF C12 C9  C 0 1 N N N 40.925 41.681 68.278 -3.817 -1.459 0.593  C12 5NF 9  
5NF C7  C10 C 0 1 N N S 36.137 42.996 72.673 2.043  0.395  0.802  C7  5NF 10 
5NF C8  C11 C 0 1 N N S 35.027 41.924 72.845 2.914  -0.131 -0.339 C8  5NF 11 
5NF C9  C12 C 0 1 N N N 33.715 42.395 72.151 3.866  0.972  -0.805 C9  5NF 12 
5NF N1  N1  N 0 1 N N N 38.549 42.164 72.619 -0.036 1.478  -0.040 N1  5NF 13 
5NF N2  N2  N 0 1 N N N 36.429 43.358 71.283 1.173  -0.676 1.270  N2  5NF 14 
5NF O1  O1  O 0 1 N N N 41.446 40.424 70.232 -4.016 0.251  -1.123 O1  5NF 15 
5NF O2  O2  O 0 1 N N N 40.971 42.347 71.864 -2.591 1.852  0.252  O2  5NF 16 
5NF O3  O3  O 0 1 N N N 38.381 40.835 70.717 -0.930 -0.324 -1.298 O3  5NF 17 
5NF O4  O4  O 0 1 N N N 37.652 43.397 69.384 -0.770 -1.695 1.351  O4  5NF 18 
5NF O5  O5  O 0 1 N N N 37.586 42.461 74.571 1.800  2.649  0.233  O5  5NF 19 
5NF H1  H1  H 0 1 N N N 38.632 40.685 68.688 -1.770 -2.158 -0.746 H1  5NF 20 
5NF H2  H2  H 0 1 N N N 39.362 39.371 69.671 -2.483 -1.395 -2.200 H2  5NF 21 
5NF H3  H3  H 0 1 N N N 40.224 43.385 70.202 -2.308 0.275  1.577  H3  5NF 22 
5NF H4  H4  H 0 1 N N N 36.453 40.315 72.648 3.053  -2.082 0.565  H4  5NF 23 
5NF H5  H5  H 0 1 N N N 35.460 40.618 71.182 4.426  -1.007 0.922  H5  5NF 24 
5NF H6  H6  H 0 1 N N N 34.833 38.480 72.267 3.805  -2.260 -1.791 H6  5NF 25 
5NF H7  H7  H 0 1 N N N 34.470 39.355 73.793 5.178  -1.185 -1.434 H7  5NF 26 
5NF H8  H8  H 0 1 N N N 33.477 39.657 72.327 5.082  -2.790 -0.671 H8  5NF 27 
5NF H9  H9  H 0 1 N N N 41.873 42.233 68.358 -3.093 -1.988 1.213  H9  5NF 28 
5NF H10 H10 H 0 1 N N N 41.067 40.801 67.634 -4.513 -0.915 1.231  H10 5NF 29 
5NF H11 H11 H 0 1 N N N 40.156 42.335 67.841 -4.367 -2.177 -0.015 H11 5NF 30 
5NF H12 H12 H 0 1 N N N 35.799 43.900 73.200 2.685  0.715  1.623  H12 5NF 31 
5NF H13 H13 H 0 1 N N N 34.824 41.808 73.920 2.279  -0.438 -1.170 H13 5NF 32 
5NF H14 H14 H 0 1 N N N 33.417 43.373 72.555 4.487  0.597  -1.618 H14 5NF 33 
5NF H15 H15 H 0 1 N N N 33.884 42.482 71.068 3.287  1.827  -1.154 H15 5NF 34 
5NF H16 H16 H 0 1 N N N 32.917 41.662 72.339 4.502  1.279  0.026  H16 5NF 35 
5NF H17 H17 H 0 1 N N N 39.352 41.873 73.138 -0.492 2.275  -0.352 H17 5NF 36 
5NF H18 H18 H 0 1 N N N 35.744 43.915 70.812 1.545  -1.351 1.860  H18 5NF 37 
5NF H19 H19 H 0 1 N N N 41.171 40.141 71.096 -4.545 -0.306 -1.711 H19 5NF 38 
5NF H20 H20 H 0 1 N N N 40.755 43.064 72.449 -3.506 2.060  0.484  H20 5NF 39 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
5NF C12 C2  SING N N 1  
5NF O4  C5  DOUB N N 2  
5NF C1  C2  SING N N 3  
5NF C1  O3  SING N N 4  
5NF C2  O1  SING N N 5  
5NF C2  C3  SING N N 6  
5NF C5  C4  SING N N 7  
5NF C5  N2  SING N N 8  
5NF C3  C4  SING N N 9  
5NF C3  O2  SING N N 10 
5NF O3  C4  SING N N 11 
5NF C4  N1  SING N N 12 
5NF N2  C7  SING N N 13 
5NF C9  C8  SING N N 14 
5NF C10 C11 SING N N 15 
5NF C10 C8  SING N N 16 
5NF N1  C6  SING N N 17 
5NF C7  C8  SING N N 18 
5NF C7  C6  SING N N 19 
5NF C6  O5  DOUB N N 20 
5NF C1  H1  SING N N 21 
5NF C1  H2  SING N N 22 
5NF C3  H3  SING N N 23 
5NF C10 H4  SING N N 24 
5NF C10 H5  SING N N 25 
5NF C11 H6  SING N N 26 
5NF C11 H7  SING N N 27 
5NF C11 H8  SING N N 28 
5NF C12 H9  SING N N 29 
5NF C12 H10 SING N N 30 
5NF C12 H11 SING N N 31 
5NF C7  H12 SING N N 32 
5NF C8  H13 SING N N 33 
5NF C9  H14 SING N N 34 
5NF C9  H15 SING N N 35 
5NF C9  H16 SING N N 36 
5NF N1  H17 SING N N 37 
5NF N2  H18 SING N N 38 
5NF O1  H19 SING N N 39 
5NF O2  H20 SING N N 40 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
5NF InChI            InChI                1.03  "InChI=1S/C12H20N2O5/c1-4-6(2)7-8(15)14-12(10(17)13-7)9(16)11(3,18)5-19-12/h6-7,9,16,18H,4-5H2,1-3H3,(H,13,17)(H,14,15)/t6-,7-,9-,11-,12-/m0/s1" 
5NF InChIKey         InChI                1.03  AXTVENSNWFMLLA-USYUNJQESA-N                                                                                                                      
5NF SMILES_CANONICAL CACTVS               3.385 "CC[C@H](C)[C@@H]1NC(=O)[C@@]2(NC1=O)OC[C@](C)(O)[C@@H]2O"                                                                                       
5NF SMILES           CACTVS               3.385 "CC[CH](C)[CH]1NC(=O)[C]2(NC1=O)OC[C](C)(O)[CH]2O"                                                                                               
5NF SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC[C@H](C)[C@H]1C(=O)N[C@]2([C@H]([C@@](CO2)(C)O)O)C(=O)N1"                                                                                     
5NF SMILES           "OpenEye OEToolkits" 2.0.7 "CCC(C)C1C(=O)NC2(C(C(CO2)(C)O)O)C(=O)N1"                                                                                                        
# 
_pdbx_chem_comp_identifier.comp_id           5NF 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "(3~{S},4~{S},5~{S},8~{S})-8-[(2~{S})-butan-2-yl]-3-methyl-3,4-bis(oxidanyl)-1-oxa-7,10-diazaspiro[4.5]decane-6,9-dione" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
5NF "Create component" 2021-08-23 PDBJ 
5NF "Initial release"  2023-02-15 RCSB 
# 
