data_6IF
#

_chem_comp.id                                   6IF
_chem_comp.name                                 "methyl 7-chloro-6,7,8-trideoxy-6-{[(4S,5aS,8S,8aR)-4-(2-methylpropyl)octahydro-2H-oxepino[2,3-c]pyrrole-8-carbonyl]amino}-1-thio-L-threo-alpha-D-galacto-octopyranoside"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C22 H39 Cl N2 O6 S"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2021-08-06
_chem_comp.pdbx_modified_date                   2021-10-08
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       495.073
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    6IF
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       7RQ9
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
6IF  N     N1   N   0  1  N  N  N  84.862  -58.346  -6.971  -1.867   2.620  -1.098  N     6IF   1  
6IF  CA    C1   C   0  1  N  N  S  83.653  -58.056  -6.153  -1.375   1.726  -0.022  CA    6IF   2  
6IF  C     C2   C   0  1  N  N  N  82.350  -57.735  -6.907  -0.122   1.018  -0.468  C     6IF   3  
6IF  O     O1   O   0  1  N  N  N  82.296  -57.800  -8.131   0.149   0.952  -1.648  O     6IF   4  
6IF  CB    C3   C   0  1  N  N  R  84.058  -56.870  -5.251  -2.497   0.704   0.235  CB    6IF   5  
6IF  CG    C4   C   0  1  N  N  S  85.162  -56.289  -6.049  -3.609   1.055  -0.708  CG    6IF   6  
6IF  CD1   C5   C   0  1  N  N  N  85.885  -57.590  -6.247  -3.353   2.546  -1.043  CD1   6IF   7  
6IF  CD2   C6   C   0  1  N  N  N  85.975  -55.427  -5.141  -4.977   0.912  -0.021  CD2   6IF   8  
6IF  CAA   C7   C   0  1  N  N  R  76.461  -57.442  -5.562   4.744  -0.138  -0.432  CAA   6IF   9  
6IF  CAB   C8   C   0  1  N  N  R  76.394  -58.922  -5.559   5.074   1.309  -0.055  CAB   6IF  10  
6IF  CAC   C9   C   0  1  N  N  S  77.686  -59.701  -5.329   3.796   2.010   0.415  CAC   6IF  11  
6IF  CAD   C10  C   0  1  N  N  R  78.844  -59.168  -6.141   3.198   1.226   1.587  CAD   6IF  12  
6IF  CAE   C11  C   0  1  N  N  R  78.883  -57.671  -5.897   2.940  -0.217   1.147  CAE   6IF  13  
6IF  CAG   C12  C   0  1  N  N  S  79.986  -57.064  -6.745   1.916  -0.229   0.010  CAG   6IF  14  
6IF  CAI   C13  C   0  1  N  N  S  79.714  -55.567  -6.875   1.581  -1.675  -0.359  CAI   6IF  15  
6IF  CAK   C14  C   0  1  N  N  N  80.904  -54.854  -7.544   0.556  -1.687  -1.496  CAK   6IF  16  
6IF  CAW   C15  C   0  1  N  N  N  83.283  -54.926  -4.151  -3.038  -1.641   0.199  CAW   6IF  17  
6IF  CAX   C16  C   0  1  N  N  N  84.031  -53.761  -4.708  -4.211  -1.233   1.045  CAX   6IF  18  
6IF  CAY   C17  C   0  1  N  N  S  85.534  -53.978  -5.169  -5.251  -0.530   0.178  CAY   6IF  19  
6IF  CBA   C18  C   0  1  N  N  N  86.587  -53.116  -4.386  -6.623  -0.681   0.838  CBA   6IF  20  
6IF  CBB   C19  C   0  1  N  N  N  86.123  -51.716  -3.985  -7.708  -0.185  -0.121  CBB   6IF  21  
6IF  CBC   C20  C   0  1  N  N  N  85.604  -50.913  -5.201  -7.736  -1.076  -1.364  CBC   6IF  22  
6IF  CBD   C21  C   0  1  N  N  N  87.329  -51.017  -3.384  -9.068  -0.240   0.577  CBD   6IF  23  
6IF  CBF   C22  C   0  1  N  N  N  76.150  -55.284  -3.889   5.646  -2.557  -1.612  CBF   6IF  24  
6IF  NAH   N2   N   0  1  N  N  N  81.299  -57.362  -6.155   0.697   0.459   0.444  NAH   6IF  25  
6IF  OAF   O2   O   0  1  N  N  N  77.622  -57.053  -6.303   4.163  -0.801   0.692  OAF   6IF  26  
6IF  OAL   O3   O   0  1  N  N  N  78.634  -59.446  -7.498   1.966   1.830   1.988  OAL   6IF  27  
6IF  OAM   O4   O   0  1  N  N  N  77.431  -61.127  -5.645   2.854   2.059  -0.659  OAM   6IF  28  
6IF  OAN   O5   O   0  1  N  N  N  75.464  -59.312  -4.473   6.039   1.320   0.998  OAN   6IF  29  
6IF  OAV   O6   O   0  1  N  N  N  82.978  -55.961  -5.082  -1.999  -0.622   0.249  OAV   6IF  30  
6IF  SBE   S1   S   0  1  N  N  N  76.312  -57.051  -3.837   6.264  -0.997  -0.923  SBE   6IF  31  
6IF  CLAJ  CL1  CL  0  0  N  N  N  79.375  -54.852  -5.261   0.893  -2.519   1.078  CLAJ  6IF  32  
6IF  H1    H1   H   0  1  N  N  N  84.758  -58.015  -7.909  -1.523   2.324  -1.999  H1    6IF  33  
6IF  H3    H3   H   0  1  N  N  N  83.459  -58.921  -5.501  -1.179   2.302   0.883  H3    6IF  34  
6IF  H4    H4   H   0  1  N  N  N  84.429  -57.244  -4.285  -2.875   0.909   1.237  H4    6IF  35  
6IF  H5    H5   H   0  1  N  N  N  84.847  -55.799  -6.982  -3.564   0.433  -1.602  H5    6IF  36  
6IF  H6    H6   H   0  1  N  N  N  86.140  -58.065  -5.288  -3.742   3.191  -0.256  H6    6IF  37  
6IF  H7    H7   H   0  1  N  N  N  86.798  -57.462  -6.847  -3.788   2.806  -2.008  H7    6IF  38  
6IF  H8    H8   H   0  1  N  N  N  85.877  -55.806  -4.113  -4.958   1.419   0.943  H8    6IF  39  
6IF  H9    H9   H   0  1  N  N  N  87.029  -55.481  -5.453  -5.752   1.350  -0.651  H9    6IF  40  
6IF  H10   H10  H   0  1  N  N  N  75.557  -57.039  -6.042   4.038  -0.145  -1.263  H10   6IF  41  
6IF  H11   H11  H   0  1  N  N  N  75.967  -59.252  -6.517   5.476   1.829  -0.925  H11   6IF  42  
6IF  H12   H12  H   0  1  N  N  N  77.947  -59.620  -4.264   4.034   3.024   0.738  H12   6IF  43  
6IF  H13   H13  H   0  1  N  N  N  79.781  -59.621  -5.785   3.897   1.232   2.424  H13   6IF  44  
6IF  H14   H14  H   0  1  N  N  N  79.083  -57.474  -4.833   2.555  -0.791   1.990  H14   6IF  45  
6IF  H15   H15  H   0  1  N  N  N  79.936  -57.511  -7.749   2.331   0.281  -0.858  H15   6IF  46  
6IF  H16   H16  H   0  1  N  N  N  78.809  -55.410  -7.481   2.487  -2.187  -0.682  H16   6IF  47  
6IF  H17   H17  H   0  1  N  N  N  80.688  -53.779  -7.628   0.972  -1.177  -2.365  H17   6IF  48  
6IF  H18   H18  H   0  1  N  N  N  81.808  -55.000  -6.935   0.318  -2.717  -1.759  H18   6IF  49  
6IF  H19   H19  H   0  1  N  N  N  81.066  -55.275  -8.547  -0.350  -1.175  -1.173  H19   6IF  50  
6IF  H20   H20  H   0  1  N  N  N  82.335  -54.553  -3.736  -2.637  -2.584   0.571  H20   6IF  51  
6IF  H21   H21  H   0  1  N  N  N  83.889  -55.364  -3.344  -3.365  -1.770  -0.832  H21   6IF  52  
6IF  H22   H22  H   0  1  N  N  N  84.038  -52.979  -3.934  -4.657  -2.119   1.498  H22   6IF  53  
6IF  H23   H23  H   0  1  N  N  N  83.471  -53.404  -5.585  -3.875  -0.555   1.829  H23   6IF  54  
6IF  H24   H24  H   0  1  N  N  N  85.583  -53.648  -6.217  -5.280  -1.017  -0.797  H24   6IF  55  
6IF  H25   H25  H   0  1  N  N  N  86.855  -53.660  -3.468  -6.799  -1.731   1.074  H25   6IF  56  
6IF  H26   H26  H   0  1  N  N  N  87.478  -53.009  -5.022  -6.652  -0.093   1.755  H26   6IF  57  
6IF  H27   H27  H   0  1  N  N  N  85.325  -51.793  -3.232  -7.491   0.842  -0.414  H27   6IF  58  
6IF  H28   H28  H   0  1  N  N  N  85.281  -49.915  -4.871  -8.576  -0.790  -1.997  H28   6IF  59  
6IF  H29   H29  H   0  1  N  N  N  86.409  -50.811  -5.943  -6.806  -0.955  -1.919  H29   6IF  60  
6IF  H30   H30  H   0  1  N  N  N  84.753  -51.443  -5.654  -7.846  -2.118  -1.062  H30   6IF  61  
6IF  H31   H31  H   0  1  N  N  N  87.694  -51.592  -2.520  -9.048   0.395   1.463  H31   6IF  62  
6IF  H32   H32  H   0  1  N  N  N  88.125  -50.945  -4.139  -9.841   0.113  -0.106  H32   6IF  63  
6IF  H33   H33  H   0  1  N  N  N  87.042  -50.007  -3.057  -9.285  -1.267   0.871  H33   6IF  64  
6IF  H34   H34  H   0  1  N  N  N  76.047  -54.894  -2.865   6.487  -3.165  -1.946  H34   6IF  65  
6IF  H35   H35  H   0  1  N  N  N  77.044  -54.848  -4.359   5.088  -3.097  -0.847  H35   6IF  66  
6IF  H36   H36  H   0  1  N  N  N  75.259  -55.015  -4.475   4.992  -2.347  -2.459  H36   6IF  67  
6IF  H37   H37  H   0  1  N  N  N  81.414  -57.285  -5.165   0.480   0.512   1.388  H37   6IF  68  
6IF  H38   H38  H   0  1  N  N  N  78.613  -60.387  -7.629   2.055   2.748   2.280  H38   6IF  69  
6IF  H39   H39  H   0  1  N  N  N  76.701  -61.441  -5.125   3.171   2.537  -1.438  H39   6IF  70  
6IF  H40   H40  H   0  1  N  N  N  75.395  -60.259  -4.440   6.874   0.887   0.771  H40   6IF  71  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
6IF  O    C     DOUB  N  N   1  
6IF  CAK  CAI   SING  N  N   2  
6IF  OAL  CAD   SING  N  N   3  
6IF  N    CD1   SING  N  N   4  
6IF  N    CA    SING  N  N   5  
6IF  C    NAH   SING  N  N   6  
6IF  C    CA    SING  N  N   7  
6IF  CAI  CAG   SING  N  N   8  
6IF  CAI  CLAJ  SING  N  N   9  
6IF  CAG  NAH   SING  N  N  10  
6IF  CAG  CAE   SING  N  N  11  
6IF  OAF  CAE   SING  N  N  12  
6IF  OAF  CAA   SING  N  N  13  
6IF  CD1  CG    SING  N  N  14  
6IF  CA   CB    SING  N  N  15  
6IF  CAD  CAE   SING  N  N  16  
6IF  CAD  CAC   SING  N  N  17  
6IF  CG   CB    SING  N  N  18  
6IF  CG   CD2   SING  N  N  19  
6IF  OAM  CAC   SING  N  N  20  
6IF  CAA  CAB   SING  N  N  21  
6IF  CAA  SBE   SING  N  N  22  
6IF  CAB  CAC   SING  N  N  23  
6IF  CAB  OAN   SING  N  N  24  
6IF  CB   OAV   SING  N  N  25  
6IF  CBC  CBB   SING  N  N  26  
6IF  CAY  CD2   SING  N  N  27  
6IF  CAY  CAX   SING  N  N  28  
6IF  CAY  CBA   SING  N  N  29  
6IF  OAV  CAW   SING  N  N  30  
6IF  CAX  CAW   SING  N  N  31  
6IF  CBA  CBB   SING  N  N  32  
6IF  CBB  CBD   SING  N  N  33  
6IF  CBF  SBE   SING  N  N  34  
6IF  N    H1    SING  N  N  35  
6IF  CA   H3    SING  N  N  36  
6IF  CB   H4    SING  N  N  37  
6IF  CG   H5    SING  N  N  38  
6IF  CD1  H6    SING  N  N  39  
6IF  CD1  H7    SING  N  N  40  
6IF  CD2  H8    SING  N  N  41  
6IF  CD2  H9    SING  N  N  42  
6IF  CAA  H10   SING  N  N  43  
6IF  CAB  H11   SING  N  N  44  
6IF  CAC  H12   SING  N  N  45  
6IF  CAD  H13   SING  N  N  46  
6IF  CAE  H14   SING  N  N  47  
6IF  CAG  H15   SING  N  N  48  
6IF  CAI  H16   SING  N  N  49  
6IF  CAK  H17   SING  N  N  50  
6IF  CAK  H18   SING  N  N  51  
6IF  CAK  H19   SING  N  N  52  
6IF  CAW  H20   SING  N  N  53  
6IF  CAW  H21   SING  N  N  54  
6IF  CAX  H22   SING  N  N  55  
6IF  CAX  H23   SING  N  N  56  
6IF  CAY  H24   SING  N  N  57  
6IF  CBA  H25   SING  N  N  58  
6IF  CBA  H26   SING  N  N  59  
6IF  CBB  H27   SING  N  N  60  
6IF  CBC  H28   SING  N  N  61  
6IF  CBC  H29   SING  N  N  62  
6IF  CBC  H30   SING  N  N  63  
6IF  CBD  H31   SING  N  N  64  
6IF  CBD  H32   SING  N  N  65  
6IF  CBD  H33   SING  N  N  66  
6IF  CBF  H34   SING  N  N  67  
6IF  CBF  H35   SING  N  N  68  
6IF  CBF  H36   SING  N  N  69  
6IF  NAH  H37   SING  N  N  70  
6IF  OAL  H38   SING  N  N  71  
6IF  OAM  H39   SING  N  N  72  
6IF  OAN  H40   SING  N  N  73  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
6IF  SMILES            ACDLabs               12.01  "OC1C(O)C(O)C(OC1SC)C(NC(=O)C1NCC2CC(CC(C)C)CCOC21)C(C)Cl"  
6IF  InChI             InChI                 1.03   "InChI=1S/C22H39ClN2O6S/c1-10(2)7-12-5-6-30-19-13(8-12)9-24-15(19)21(29)25-14(11(3)23)20-17(27)16(26)18(28)22(31-20)32-4/h10-20,22,24,26-28H,5-9H2,1-4H3,(H,25,29)/t11-,12-,13-,14+,15-,16-,17+,18+,19+,20+,22+/m0/s1"  
6IF  InChIKey          InChI                 1.03   JPCLUJPDWMBCAA-SUTQZAMLSA-N  
6IF  SMILES_CANONICAL  CACTVS                3.385  "CS[C@H]1O[C@@H]([C@H](O)[C@H](O)[C@H]1O)[C@H](NC(=O)[C@H]2NC[C@@H]3C[C@@H](CCO[C@@H]23)CC(C)C)[C@H](C)Cl"  
6IF  SMILES            CACTVS                3.385  "CS[CH]1O[CH]([CH](O)[CH](O)[CH]1O)[CH](NC(=O)[CH]2NC[CH]3C[CH](CCO[CH]23)CC(C)C)[CH](C)Cl"  
6IF  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "C[C@@H]([C@H]([C@@H]1[C@@H]([C@@H]([C@H]([C@H](O1)SC)O)O)O)NC(=O)[C@@H]2[C@H]3[C@@H](C[C@@H](CCO3)CC(C)C)CN2)Cl"  
6IF  SMILES            "OpenEye OEToolkits"  2.0.7  "CC(C)CC1CCOC2C(C1)CNC2C(=O)NC(C3C(C(C(C(O3)SC)O)O)O)C(C)Cl"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
6IF  "SYSTEMATIC NAME"  ACDLabs               12.01  "methyl 7-chloro-6,7,8-trideoxy-6-{[(4S,5aS,8S,8aR)-4-(2-methylpropyl)octahydro-2H-oxepino[2,3-c]pyrrole-8-carbonyl]amino}-1-thio-L-threo-alpha-D-galacto-octopyranoside"  
6IF  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.7  "(4~{S},5~{a}~{S},8~{S},8~{a}~{R})-~{N}-[(1~{S},2~{S})-2-chloranyl-1-[(2~{R},3~{R},4~{S},5~{R},6~{R})-6-methylsulfanyl-3,4,5-tris(oxidanyl)oxan-2-yl]propyl]-4-(2-methylpropyl)-3,4,5,5~{a},6,7,8,8~{a}-octahydro-2~{H}-oxepino[2,3-c]pyrrole-8-carboxamide"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
6IF  "Create component"  2021-08-06  RCSB  
6IF  "Initial release"   2021-10-13  RCSB  
##
