data_72F
# 
_chem_comp.id                                    72F 
_chem_comp.name                                  "N-[3-({6-[(2S)-2-cyano-3-(methylamino)-3-oxopropyl]-7-(2-methoxyethyl)-7H-pyrrolo[2,3-d]pyrimidin-5-yl}ethynyl)-4-methylphenyl]-3-(trifluoromethyl)benzamide" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C31 H27 F3 N6 O3" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         "N-[3-({6-[(1E)-2-cyano-3-(methylamino)-3-oxoprop-1-en-1-yl]-7-(2-methoxyethyl)-7H-pyrrolo[2,3-d]pyrimidin-5-yl}ethynyl)-4-methylphenyl]-3-(trifluoromethyl)benzamide inhibitor, bound form" 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2016-08-15 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        588.580 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     72F 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        5SYS 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
72F C7  C1  C 0 1 Y N N N N N 6.072  37.283 5.737  -2.502 1.007  0.372  C7  72F 1  
72F C10 C2  C 0 1 Y N N N N N 3.064  35.149 7.415  0.275  -1.923 0.268  C10 72F 2  
72F C6  C3  C 0 1 Y N N N N N 7.328  36.676 5.446  -2.289 2.434  0.082  C6  72F 3  
72F C4  C4  C 0 1 Y N N N N N 9.861  36.311 4.579  -2.569 5.062  -0.306 C4  72F 4  
72F C5  C5  C 0 1 Y N N N N N 8.081  35.533 5.730  -1.197 3.211  -0.289 C5  72F 5  
72F C9  C6  C 0 1 N N N N N N 4.155  35.931 6.908  -0.710 -0.884 0.305  C9  72F 6  
72F C1  C7  C 0 1 N N N N N N 6.680  39.627 2.178  -6.658 2.163  -0.411 C1  72F 7  
72F N1  N1  N 0 1 Y N N N N N 9.283  37.449 4.188  -3.630 4.368  0.045  N1  72F 8  
72F C2  C8  C 0 1 N N N N N N 7.482  39.804 3.460  -5.859 2.319  0.883  C2  72F 9  
72F O1  O1  O 0 1 N N N N N N -1.521 32.408 6.927  3.733  -0.330 0.511  O1  72F 10 
72F N2  N2  N 0 1 Y N N N N N 9.338  35.336 5.318  -1.380 4.510  -0.471 N2  72F 11 
72F C3  C9  C 0 1 Y N N N N N 8.029  37.599 4.640  -3.542 3.057  0.249  C3  72F 12 
72F C11 C10 C 0 1 Y N N N N N 2.345  34.292 6.579  1.598  -1.624 -0.064 C11 72F 13 
72F C13 C11 C 0 1 N N N N N N -0.514 31.918 6.417  4.417  -1.166 -0.045 C13 72F 14 
72F C12 C12 C 0 1 Y N N N N N 1.218  33.626 7.066  2.545  -2.634 -0.092 C12 72F 15 
72F N3  N3  N 0 1 N N N N N N 0.652  32.603 6.253  3.872  -2.339 -0.424 N3  72F 16 
72F C8  C13 C 0 1 N N N N N N 5.036  36.565 6.407  -1.518 -0.032 0.335  C8  72F 17 
72F N5  N4  N 0 1 N N N N N N 2.382  38.417 7.061  -3.034 -1.784 -1.734 N5  72F 18 
72F C30 C14 C 0 1 N N N N N N 2.902  38.846 6.143  -3.903 -1.488 -1.065 C30 72F 19 
72F C27 C15 C 0 1 N N S N N N 3.625  39.374 4.984  -5.029 -1.104 -0.198 C27 72F 20 
72F C28 C16 C 0 1 N N N N N N 2.899  40.609 4.443  -5.808 -2.335 0.188  C28 72F 21 
72F O2  O2  O 0 1 N N N N N N 2.551  41.519 5.195  -5.923 -2.638 1.356  O2  72F 22 
72F N4  N5  N 0 1 N N N N N N 2.662  40.617 3.136  -6.377 -3.099 -0.766 N4  72F 23 
72F C29 C17 C 0 1 N N N N N N 1.661  41.479 2.533  -7.135 -4.295 -0.391 C29 72F 24 
72F C26 C18 C 0 1 N N N N N N 5.080  39.675 5.422  -4.493 -0.424 1.063  C26 72F 25 
72F C25 C19 C 0 1 Y N N N N N 6.066  38.530 5.166  -3.819 0.871  0.688  C25 72F 26 
72F N   N6  N 0 1 Y N N N N N 7.226  38.719 4.428  -4.438 2.086  0.611  N   72F 27 
72F O   O3  O 0 1 N N N N N N 7.471  40.073 1.072  -8.044 2.391  -0.146 O   72F 28 
72F C   C20 C 0 1 N N N N N N 7.491  41.484 0.843  -8.884 2.269  -1.295 C   72F 29 
72F C23 C21 C 0 1 Y N N N N N 2.689  35.327 8.754  -0.083 -3.240 0.571  C23 72F 30 
72F C24 C22 C 0 1 N N N N N N 3.601  36.023 9.731  -1.508 -3.569 0.936  C24 72F 31 
72F C22 C23 C 0 1 Y N N N N N 1.519  34.710 9.190  0.868  -4.239 0.534  C22 72F 32 
72F C21 C24 C 0 1 Y N N N N N 0.782  33.882 8.364  2.178  -3.941 0.211  C21 72F 33 
72F C14 C25 C 0 1 Y N N N N N -0.528 30.510 5.903  5.847  -0.897 -0.306 C14 72F 34 
72F C20 C26 C 0 1 Y N N N N N 0.638  29.756 5.758  6.635  -1.856 -0.945 C20 72F 35 
72F C19 C27 C 0 1 Y N N N N N 0.582  28.472 5.238  7.969  -1.599 -1.185 C19 72F 36 
72F C18 C28 C 0 1 Y N N N N N -0.631 27.930 4.859  8.526  -0.394 -0.794 C18 72F 37 
72F C16 C29 C 0 1 Y N N N N N -1.801 28.666 4.995  7.750  0.561  -0.161 C16 72F 38 
72F C15 C30 C 0 1 Y N N N N N -1.746 29.949 5.530  6.413  0.318  0.080  C15 72F 39 
72F C17 C31 C 0 1 N N N N N N -3.101 28.125 4.510  8.365  1.870  0.262  C17 72F 40 
72F F   F1  F 0 1 N N N N N N -3.634 28.886 3.561  8.242  2.017  1.648  F   72F 41 
72F F1  F2  F 0 1 N N N N N N -4.026 28.077 5.463  9.718  1.885  -0.091 F1  72F 42 
72F F2  F3  F 0 1 N N N N N N -2.987 26.891 4.011  7.704  2.924  -0.379 F2  72F 43 
72F H1  H1  H 0 1 N N N N N N 10.881 36.163 4.255  -2.673 6.125  -0.465 H1  72F 44 
72F H2  H2  H 0 1 N N N N N N 7.617  34.758 6.321  -0.223 2.766  -0.425 H2  72F 45 
72F H3  H3  H 0 1 N N N N N N 5.756  40.222 2.235  -6.306 2.888  -1.146 H3  72F 46 
72F H4  H4  H 0 1 N N N N N N 6.425  38.565 2.045  -6.524 1.155  -0.802 H4  72F 47 
72F H5  H5  H 0 1 N N N N N N 8.553  39.811 3.210  -5.993 3.328  1.274  H5  72F 48 
72F H6  H6  H 0 1 N N N N N N 7.206  40.764 3.921  -6.211 1.595  1.618  H6  72F 49 
72F H7  H7  H 0 1 N N N N N N 2.660  34.144 5.557  1.881  -0.608 -0.299 H7  72F 50 
72F H8  H8  H 0 1 N N N N N N 1.187  32.352 5.446  4.399  -2.979 -0.927 H8  72F 51 
72F H9  H9  H 0 1 N N N N N N 3.653  38.611 4.192  -5.681 -0.414 -0.734 H9  72F 52 
72F H10 H10 H 0 1 N N N N N N 3.192  40.008 2.546  -6.285 -2.856 -1.701 H10 72F 53 
72F H11 H11 H 0 1 N N N N N N 1.642  41.314 1.446  -6.482 -4.985 0.145  H11 72F 54 
72F H12 H12 H 0 1 N N N N N N 0.673  41.246 2.957  -7.968 -4.011 0.251  H12 72F 55 
72F H13 H13 H 0 1 N N N N N N 1.910  42.530 2.740  -7.516 -4.780 -1.290 H13 72F 56 
72F H14 H14 H 0 1 N N N N N N 5.430  40.560 4.870  -5.319 -0.220 1.745  H14 72F 57 
72F H15 H15 H 0 1 N N N N N N 5.077  39.892 6.500  -3.772 -1.080 1.551  H15 72F 58 
72F H16 H16 H 0 1 N N N N N N 8.127  41.706 -0.027 -9.919 2.456  -1.010 H16 72F 59 
72F H17 H17 H 0 1 N N N N N N 6.468  41.838 0.649  -8.577 2.995  -2.048 H17 72F 60 
72F H18 H18 H 0 1 N N N N N N 7.893  41.994 1.731  -8.796 1.262  -1.705 H18 72F 61 
72F H19 H19 H 0 1 N N N N N N 3.344  37.092 9.775  -2.066 -3.817 0.034  H19 72F 62 
72F H20 H20 H 0 1 N N N N N N 3.480  35.575 10.728 -1.521 -4.420 1.617  H20 72F 63 
72F H21 H21 H 0 1 N N N N N N 4.645  35.910 9.403  -1.967 -2.708 1.422  H21 72F 64 
72F H22 H22 H 0 1 N N N N N N 1.178  34.883 10.200 0.589  -5.256 0.768  H22 72F 65 
72F H23 H23 H 0 1 N N N N N N -0.132 33.434 8.725  2.919  -4.726 0.188  H23 72F 66 
72F H24 H24 H 0 1 N N N N N N 1.589  30.175 6.052  6.202  -2.797 -1.249 H24 72F 67 
72F H25 H25 H 0 1 N N N N N N 1.488  27.895 5.129  8.580  -2.339 -1.679 H25 72F 68 
72F H26 H26 H 0 1 N N N N N N -0.670 26.929 4.455  9.571  -0.199 -0.980 H26 72F 69 
72F H27 H27 H 0 1 N N N N N N -2.657 30.515 5.657  5.808  1.064  0.574  H27 72F 70 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
72F C   O   SING N N 1  
72F O   C1  SING N N 2  
72F C1  C2  SING N N 3  
72F C29 N4  SING N N 4  
72F N4  C28 SING N N 5  
72F C2  N   SING N N 6  
72F F   C17 SING N N 7  
72F F2  C17 SING N N 8  
72F N1  C4  DOUB Y N 9  
72F N1  C3  SING Y N 10 
72F N   C3  SING Y N 11 
72F N   C25 SING Y N 12 
72F C28 C27 SING N N 13 
72F C28 O2  DOUB N N 14 
72F C17 C16 SING N N 15 
72F C17 F1  SING N N 16 
72F C4  N2  SING Y N 17 
72F C3  C6  DOUB Y N 18 
72F C18 C16 DOUB Y N 19 
72F C18 C19 SING Y N 20 
72F C27 C26 SING N N 21 
72F C27 C30 SING N N 22 
72F C16 C15 SING Y N 23 
72F C25 C26 SING N N 24 
72F C25 C7  DOUB Y N 25 
72F C19 C20 DOUB Y N 26 
72F N2  C5  DOUB Y N 27 
72F C6  C5  SING Y N 28 
72F C6  C7  SING Y N 29 
72F C15 C14 DOUB Y N 30 
72F C7  C8  SING N N 31 
72F C20 C14 SING Y N 32 
72F C14 C13 SING N N 33 
72F C30 N5  TRIP N N 34 
72F N3  C13 SING N N 35 
72F N3  C12 SING N N 36 
72F C8  C9  TRIP N N 37 
72F C13 O1  DOUB N N 38 
72F C11 C12 DOUB Y N 39 
72F C11 C10 SING Y N 40 
72F C9  C10 SING N N 41 
72F C12 C21 SING Y N 42 
72F C10 C23 DOUB Y N 43 
72F C21 C22 DOUB Y N 44 
72F C23 C22 SING Y N 45 
72F C23 C24 SING N N 46 
72F C4  H1  SING N N 47 
72F C5  H2  SING N N 48 
72F C1  H3  SING N N 49 
72F C1  H4  SING N N 50 
72F C2  H5  SING N N 51 
72F C2  H6  SING N N 52 
72F C11 H7  SING N N 53 
72F N3  H8  SING N N 54 
72F C27 H9  SING N N 55 
72F N4  H10 SING N N 56 
72F C29 H11 SING N N 57 
72F C29 H12 SING N N 58 
72F C29 H13 SING N N 59 
72F C26 H14 SING N N 60 
72F C26 H15 SING N N 61 
72F C   H16 SING N N 62 
72F C   H17 SING N N 63 
72F C   H18 SING N N 64 
72F C24 H19 SING N N 65 
72F C24 H20 SING N N 66 
72F C24 H21 SING N N 67 
72F C22 H22 SING N N 68 
72F C21 H23 SING N N 69 
72F C20 H24 SING N N 70 
72F C19 H25 SING N N 71 
72F C18 H26 SING N N 72 
72F C15 H27 SING N N 73 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
72F SMILES           ACDLabs              12.01 "c4(C#Cc1c(ccc(c1)NC(=O)c2cccc(c2)C(F)(F)F)C)c3cncnc3n(CCOC)c4CC(C#N)C(=O)NC"                                                                                                                                                      
72F InChI            InChI                1.03  "InChI=1S/C31H27F3N6O3/c1-19-7-9-24(39-30(42)21-5-4-6-23(13-21)31(32,33)34)14-20(19)8-10-25-26-17-37-18-38-28(26)40(11-12-43-3)27(25)15-22(16-35)29(41)36-2/h4-7,9,13-14,17-18,22H,11-12,15H2,1-3H3,(H,36,41)(H,39,42)/t22-/m0/s1" 
72F InChIKey         InChI                1.03  JDCJZTAGQPRSAO-QFIPXVFZSA-N                                                                                                                                                                                                        
72F SMILES_CANONICAL CACTVS               3.385 "CNC(=O)[C@@H](Cc1n(CCOC)c2ncncc2c1C#Cc3cc(NC(=O)c4cccc(c4)C(F)(F)F)ccc3C)C#N"                                                                                                                                                     
72F SMILES           CACTVS               3.385 "CNC(=O)[CH](Cc1n(CCOC)c2ncncc2c1C#Cc3cc(NC(=O)c4cccc(c4)C(F)(F)F)ccc3C)C#N"                                                                                                                                                       
72F SMILES_CANONICAL "OpenEye OEToolkits" 2.0.5 "Cc1ccc(cc1C#Cc2c3cncnc3n(c2C[C@@H](C#N)C(=O)NC)CCOC)NC(=O)c4cccc(c4)C(F)(F)F"                                                                                                                                                     
72F SMILES           "OpenEye OEToolkits" 2.0.5 "Cc1ccc(cc1C#Cc2c3cncnc3n(c2CC(C#N)C(=O)NC)CCOC)NC(=O)c4cccc(c4)C(F)(F)F"                                                                                                                                                          
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
72F "SYSTEMATIC NAME" ACDLabs              12.01 "N-[3-({6-[(2S)-2-cyano-3-(methylamino)-3-oxopropyl]-7-(2-methoxyethyl)-7H-pyrrolo[2,3-d]pyrimidin-5-yl}ethynyl)-4-methylphenyl]-3-(trifluoromethyl)benzamide"                 
72F "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.5 "~{N}-[3-[2-[6-[(2~{S})-2-cyano-3-(methylamino)-3-oxidanylidene-propyl]-7-(2-methoxyethyl)pyrrolo[2,3-d]pyrimidin-5-yl]ethynyl]-4-methyl-phenyl]-3-(trifluoromethyl)benzamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
72F "Create component" 2016-08-15 RCSB 
72F "Initial release"  2017-08-16 RCSB 
72F "Modify synonyms"  2021-03-13 RCSB 
72F "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_synonyms.ordinal      1 
_pdbx_chem_comp_synonyms.comp_id      72F 
_pdbx_chem_comp_synonyms.name         "N-[3-({6-[(1E)-2-cyano-3-(methylamino)-3-oxoprop-1-en-1-yl]-7-(2-methoxyethyl)-7H-pyrrolo[2,3-d]pyrimidin-5-yl}ethynyl)-4-methylphenyl]-3-(trifluoromethyl)benzamide inhibitor, bound form" 
_pdbx_chem_comp_synonyms.provenance   PDB 
_pdbx_chem_comp_synonyms.type         ? 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            72F 
_pdbx_chem_comp_pcm.modified_residue_id                CYS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C26 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   SG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
