data_83F
# 
_chem_comp.id                                    83F 
_chem_comp.name                                  "tert-butyl-N-[(2S)-3-methyl-1-[(2S,4S)-4-methyl-2-[[(2S)-1-oxidanyl-3-[(3S)-2-oxidanylidenepyrrolidin-3-yl]propan-2-yl]carbamoyl]pyrrolidin-1-yl]-1-oxidanylidene-butan-2-yl]carbamate" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C23 H40 N4 O6" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         "tert-butyl N-[(2S)-3-methyl-1-[(2S,4S)-4-methyl-2-[[(2S)-1-oxidanylidene-3-[(3S)-2-oxidanylidenepyrrolidin-3-yl]propan-2-yl]carbamoyl]pyrrolidin-1-yl]-1-oxidanylidene-butan-2-yl]carbamate" 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2021-09-30 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        468.587 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     83F 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7PT8 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
83F C1  C1  C 0 1 N N N N N N 25.019 4.724  -31.360 -0.248 5.414  1.163  C1  83F 1  
83F C10 C2  C 0 1 N N N N N N 17.610 7.916  -25.617 -3.930 -4.245 -0.169 C10 83F 2  
83F C11 C3  C 0 1 N N N N N N 16.927 5.692  -25.814 -5.409 -2.807 0.898  C11 83F 3  
83F C12 C4  C 0 1 N N N N N N 21.307 3.329  -24.775 -4.680 1.318  -1.828 C12 83F 4  
83F C13 C5  C 0 1 N N N N N N 22.834 5.980  -30.914 0.757  3.141  0.652  C13 83F 5  
83F C14 C6  C 0 1 N N N N N N 20.466 6.302  -30.072 0.996  0.650  0.449  C14 83F 6  
83F C15 C7  C 0 1 N N S N N N 20.318 7.595  -30.873 2.463  0.776  0.128  C15 83F 7  
83F C16 C8  C 0 1 N N N N N N 20.134 7.495  -33.291 4.351  -0.764 0.119  C16 83F 8  
83F C17 C9  C 0 1 N N N N N N 19.518 7.313  -35.679 6.302  -2.139 0.161  C17 83F 9  
83F C18 C10 C 0 1 N N N N N N 18.208 7.204  -36.422 6.622  -1.776 1.613  C18 83F 10 
83F C19 C11 C 0 1 N N N N N N 20.230 8.603  -36.021 7.073  -1.210 -0.779 C19 83F 11 
83F C2  C12 C 0 1 N N S N N N 23.601 4.641  -30.853 -0.226 3.934  1.548  C2  83F 12 
83F C20 C13 C 0 1 N N N N N N 20.397 6.117  -35.961 6.712  -3.588 -0.104 C20 83F 13 
83F C21 C14 C 0 1 N N N N N N 19.633 8.681  -30.031 2.637  1.610  -1.143 C21 83F 14 
83F C22 C15 C 0 1 N N N N N N 19.412 9.951  -30.847 4.127  1.738  -1.469 C22 83F 15 
83F C23 C16 C 0 1 N N N N N N 20.412 8.996  -28.761 1.918  0.922  -2.306 C23 83F 16 
83F C3  C17 C 0 1 N N N N N N 23.419 4.257  -29.376 -1.577 3.250  1.209  C3  83F 17 
83F C4  C18 C 0 1 N N S N N N 21.939 4.589  -29.142 -1.175 1.775  1.002  C4  83F 18 
83F C5  C19 C 0 1 N N N N N N 21.683 5.019  -27.703 -1.965 1.183  -0.137 C5  83F 19 
83F C6  C20 C 0 1 N N S N N N 20.632 4.440  -25.565 -4.000 0.195  -1.042 C6  83F 20 
83F C7  C21 C 0 1 N N N N N N 19.123 4.513  -25.287 -5.064 -0.754 -0.486 C7  83F 21 
83F C8  C22 C 0 1 N N S N N N 18.434 5.686  -25.979 -4.381 -1.923 0.228  C8  83F 22 
83F C9  C23 C 0 1 N N N N N N 18.846 7.059  -25.468 -3.691 -2.854 -0.796 C9  83F 23 
83F N1  N1  N 0 1 N N N N N N 20.881 4.224  -26.990 -3.232 0.770  0.065  N1  83F 24 
83F N2  N2  N 0 1 N N N N N N 16.532 6.932  -25.577 -5.136 -4.100 0.656  N2  83F 25 
83F N3  N3  N 0 1 N N N N N N 21.661 5.696  -30.066 0.259  1.754  0.680  N3  83F 26 
83F N4  N4  N 0 1 N N N N N N 19.583 7.287  -32.086 3.035  -0.557 -0.080 N4  83F 27 
83F O1  O1  O 0 1 N N N N N N 22.187 6.046  -27.242 -1.461 1.080  -1.235 O1  83F 28 
83F O2  O2  O 0 1 N N N N N N 16.192 4.715  -25.970 -6.344 -2.407 1.559  O2  83F 29 
83F O3  O3  O 0 1 N N N N N N 21.147 3.513  -23.389 -5.644 1.967  -0.996 O3  83F 30 
83F O4  O4  O 0 1 N N N N N N 19.502 5.844  -29.443 0.479  -0.446 0.499  O4  83F 31 
83F O5  O5  O 0 1 N N N N N N 21.285 7.828  -33.461 5.065  0.155  0.471  O5  83F 32 
83F O6  O6  O 0 1 N N N N N N 19.199 7.320  -34.234 4.877  -1.989 -0.072 O6  83F 33 
83F H2  H1  H 0 1 N N N N N N 25.495 3.735  -31.284 -0.539 5.513  0.117  H2  83F 34 
83F H3  H2  H 0 1 N N N N N N 25.014 5.048  -32.411 -0.966 5.943  1.790  H3  83F 35 
83F H1  H3  H 0 1 N N N N N N 25.583 5.449  -30.755 0.744  5.842  1.306  H1  83F 36 
83F H16 H4  H 0 1 N N N N N N 17.616 8.459  -26.574 -4.094 -4.988 -0.949 H16 83F 37 
83F H15 H5  H 0 1 N N N N N N 17.523 8.634  -24.788 -3.081 -4.529 0.452  H15 83F 38 
83F H21 H8  H 0 1 N N N N N N 23.435 6.805  -30.503 0.740  3.530  -0.366 H21 83F 39 
83F H22 H9  H 0 1 N N N N N N 22.534 6.223  -31.944 1.767  3.190  1.060  H22 83F 40 
83F H23 H10 H 0 1 N N N N N N 21.324 7.952  -31.139 2.975  1.266  0.956  H23 83F 41 
83F H27 H11 H 0 1 N N N N N N 17.712 6.259  -36.155 6.073  -2.438 2.283  H27 83F 42 
83F H25 H12 H 0 1 N N N N N N 17.559 8.049  -36.147 7.692  -1.888 1.788  H25 83F 43 
83F H26 H13 H 0 1 N N N N N N 18.398 7.225  -37.505 6.330  -0.743 1.802  H26 83F 44 
83F H30 H14 H 0 1 N N N N N N 21.179 8.657  -35.467 6.780  -0.177 -0.589 H30 83F 45 
83F H28 H15 H 0 1 N N N N N N 20.434 8.634  -37.102 8.143  -1.322 -0.603 H28 83F 46 
83F H29 H16 H 0 1 N N N N N N 19.595 9.457  -35.743 6.845  -1.468 -1.812 H29 83F 47 
83F H4  H17 H 0 1 N N N N N N 23.055 3.909  -31.466 0.021  3.811  2.603  H4  83F 48 
83F H31 H18 H 0 1 N N N N N N 21.344 6.219  -35.410 6.484  -3.847 -1.138 H31 83F 49 
83F H32 H19 H 0 1 N N N N N N 19.882 5.200  -35.639 7.782  -3.701 0.071  H32 83F 50 
83F H33 H20 H 0 1 N N N N N N 20.605 6.061  -37.040 6.163  -4.250 0.565  H33 83F 51 
83F H34 H21 H 0 1 N N N N N N 18.646 8.298  -29.733 2.212  2.601  -0.989 H34 83F 52 
83F H37 H22 H 0 1 N N N N N N 18.921 10.710 -30.220 4.552  0.747  -1.624 H37 83F 53 
83F H35 H23 H 0 1 N N N N N N 20.382 10.336 -31.196 4.250  2.332  -2.375 H35 83F 54 
83F H36 H24 H 0 1 N N N N N N 18.774 9.723  -31.714 4.639  2.228  -0.641 H36 83F 55 
83F H40 H25 H 0 1 N N N N N N 19.886 9.776  -28.192 0.857  0.831  -2.074 H40 83F 56 
83F H38 H26 H 0 1 N N N N N N 20.495 8.087  -28.147 2.042  1.516  -3.212 H38 83F 57 
83F H39 H27 H 0 1 N N N N N N 21.418 9.352  -29.027 2.344  -0.069 -2.461 H39 83F 58 
83F H6  H28 H 0 1 N N N N N N 23.620 3.188  -29.213 -2.277 3.347  2.039  H6  83F 59 
83F H5  H29 H 0 1 N N N N N N 24.071 4.856  -28.724 -2.001 3.666  0.296  H5  83F 60 
83F H7  H30 H 0 1 N N N N N N 21.319 3.714  -29.387 -1.360 1.208  1.915  H7  83F 61 
83F H9  H31 H 0 1 N N N N N N 21.081 5.398  -25.264 -3.330 -0.356 -1.702 H9  83F 62 
83F H11 H32 H 0 1 N N N N N N 18.973 4.612  -24.202 -5.697 -0.217 0.220  H11 83F 63 
83F H10 H33 H 0 1 N N N N N N 18.658 3.580  -25.638 -5.674 -1.135 -1.305 H10 83F 64 
83F H12 H34 H 0 1 N N N N N N 18.664 5.635  -27.053 -3.659 -1.556 0.957  H12 83F 65 
83F H14 H35 H 0 1 N N N N N N 19.154 7.003  -24.413 -2.625 -2.635 -0.866 H14 83F 66 
83F H13 H36 H 0 1 N N N N N N 19.673 7.464  -26.070 -4.168 -2.780 -1.774 H13 83F 67 
83F H8  H37 H 0 1 N N N N N N 20.435 3.454  -27.446 -3.635 0.853  0.944  H8  83F 68 
83F H17 H38 H 0 1 N N N N N N 15.580 7.174  -25.387 -5.667 -4.843 0.983  H17 83F 69 
83F H24 H39 H 0 1 N N N N N N 18.657 6.916  -32.023 2.465  -1.290 -0.361 H24 83F 70 
83F H18 H40 H 0 1 N N N N N N 20.862 2.365  -25.062 -3.931 2.042  -2.149 H18 83F 71 
83F H19 H41 H 0 1 N Y N N N N 22.381 3.322  -25.013 -5.178 0.899  -2.703 H19 83F 72 
83F H20 H42 H 0 1 N N N N N N 21.578 2.806  -22.923 -6.114 2.691  -1.430 H20 83F 73 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
83F C18 C17 SING N N 1  
83F C19 C17 SING N N 2  
83F C20 C17 SING N N 3  
83F C17 O6  SING N N 4  
83F O6  C16 SING N N 5  
83F O5  C16 DOUB N N 6  
83F C16 N4  SING N N 7  
83F N4  C15 SING N N 8  
83F C1  C2  SING N N 9  
83F C13 C2  SING N N 10 
83F C13 N3  SING N N 11 
83F C15 C14 SING N N 12 
83F C15 C21 SING N N 13 
83F C2  C3  SING N N 14 
83F C22 C21 SING N N 15 
83F C14 N3  SING N N 16 
83F C14 O4  DOUB N N 17 
83F N3  C4  SING N N 18 
83F C21 C23 SING N N 19 
83F C3  C4  SING N N 20 
83F C4  C5  SING N N 21 
83F C5  O1  DOUB N N 22 
83F C5  N1  SING N N 23 
83F N1  C6  SING N N 24 
83F C8  C11 SING N N 25 
83F C8  C9  SING N N 26 
83F C8  C7  SING N N 27 
83F O2  C11 DOUB N N 28 
83F C11 N2  SING N N 29 
83F C10 N2  SING N N 30 
83F C10 C9  SING N N 31 
83F C6  C7  SING N N 32 
83F C6  C12 SING N N 33 
83F C12 O3  SING N N 34 
83F C1  H2  SING N N 35 
83F C1  H3  SING N N 36 
83F C1  H1  SING N N 37 
83F C10 H16 SING N N 38 
83F C10 H15 SING N N 39 
83F C13 H21 SING N N 40 
83F C13 H22 SING N N 41 
83F C15 H23 SING N N 42 
83F C18 H27 SING N N 43 
83F C18 H25 SING N N 44 
83F C18 H26 SING N N 45 
83F C19 H30 SING N N 46 
83F C19 H28 SING N N 47 
83F C19 H29 SING N N 48 
83F C2  H4  SING N N 49 
83F C20 H31 SING N N 50 
83F C20 H32 SING N N 51 
83F C20 H33 SING N N 52 
83F C21 H34 SING N N 53 
83F C22 H37 SING N N 54 
83F C22 H35 SING N N 55 
83F C22 H36 SING N N 56 
83F C23 H40 SING N N 57 
83F C23 H38 SING N N 58 
83F C23 H39 SING N N 59 
83F C3  H6  SING N N 60 
83F C3  H5  SING N N 61 
83F C4  H7  SING N N 62 
83F C6  H9  SING N N 63 
83F C7  H11 SING N N 64 
83F C7  H10 SING N N 65 
83F C8  H12 SING N N 66 
83F C9  H14 SING N N 67 
83F C9  H13 SING N N 68 
83F N1  H8  SING N N 69 
83F N2  H17 SING N N 70 
83F N4  H24 SING N N 71 
83F C12 H18 SING N N 72 
83F C12 H19 SING N N 73 
83F O3  H20 SING N N 74 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
83F InChI            InChI                1.06  "InChI=1S/C23H40N4O6/c1-13(2)18(26-22(32)33-23(4,5)6)21(31)27-11-14(3)9-17(27)20(30)25-16(12-28)10-15-7-8-24-19(15)29/h13-18,28H,7-12H2,1-6H3,(H,24,29)(H,25,30)(H,26,32)/t14-,15-,16-,17-,18-/m0/s1" 
83F InChIKey         InChI                1.06  CUINDADQQONHSA-ATIWLJMLSA-N                                                                                                                                                                           
83F SMILES_CANONICAL CACTVS               3.385 "CC(C)[C@H](NC(=O)OC(C)(C)C)C(=O)N1C[C@@H](C)C[C@H]1C(=O)N[C@H](CO)C[C@@H]2CCNC2=O"                                                                                                                   
83F SMILES           CACTVS               3.385 "CC(C)[CH](NC(=O)OC(C)(C)C)C(=O)N1C[CH](C)C[CH]1C(=O)N[CH](CO)C[CH]2CCNC2=O"                                                                                                                          
83F SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@H]1C[C@H](N(C1)C(=O)[C@H](C(C)C)NC(=O)OC(C)(C)C)C(=O)N[C@@H](C[C@@H]2CCNC2=O)CO"                                                                                                                 
83F SMILES           "OpenEye OEToolkits" 2.0.7 "CC1CC(N(C1)C(=O)C(C(C)C)NC(=O)OC(C)(C)C)C(=O)NC(CC2CCNC2=O)CO"                                                                                                                                       
# 
_pdbx_chem_comp_identifier.comp_id           83F 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "~{tert}-butyl ~{N}-[(2~{S})-3-methyl-1-[(2~{S},4~{S})-4-methyl-2-[[(2~{S})-1-oxidanyl-3-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]propan-2-yl]carbamoyl]pyrrolidin-1-yl]-1-oxidanylidene-butan-2-yl]carbamate" 
# 
_pdbx_chem_comp_synonyms.ordinal      1 
_pdbx_chem_comp_synonyms.comp_id      83F 
_pdbx_chem_comp_synonyms.name         "tert-butyl N-[(2S)-3-methyl-1-[(2S,4S)-4-methyl-2-[[(2S)-1-oxidanylidene-3-[(3S)-2-oxidanylidenepyrrolidin-3-yl]propan-2-yl]carbamoyl]pyrrolidin-1-yl]-1-oxidanylidene-butan-2-yl]carbamate" 
_pdbx_chem_comp_synonyms.provenance   PDB 
_pdbx_chem_comp_synonyms.type         precursor 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
83F "Create component"     2021-10-04 PDBE 
83F "Modify formula"       2021-10-04 PDBE 
83F "Modify aromatic_flag" 2021-10-04 PDBE 
83F "Modify descriptor"    2022-08-22 RCSB 
83F "Initial release"      2023-05-03 RCSB 
83F "Modify PCM"           2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            83F 
_pdbx_chem_comp_pcm.modified_residue_id                CYS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C12 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   SG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
