data_86F
# 
_chem_comp.id                                    86F 
_chem_comp.name                                  "(3~{S})-1-(iminomethyl)-~{N}-pent-4-ynyl-pyrrolidine-3-carboxamide" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C12 H19 N3 O S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-07-10 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        253.364 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     86F 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   Y 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8PPW 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
86F C13  C1  C 0 1 N N N N N N -19.035 15.294 -6.495 5.767  0.256  0.355  C13  86F 1  
86F C15  C2  C 0 1 N N N N N N -16.493 16.096 -6.411 7.281  2.345  -0.231 C15  86F 2  
86F C17  C3  C 0 1 N N N N N N -19.279 13.916 0.255  -0.877 0.072  0.100  C17  86F 3  
86F C02  C4  C 0 1 N N N N N N -17.664 14.313 2.234  -3.298 0.826  0.074  C02  86F 4  
86F C06  C5  C 0 1 N N N N N N -17.141 12.708 0.285  -2.581 -1.597 -0.092 C06  86F 5  
86F C07  C6  C 0 1 N N N N N N -18.200 11.855 -0.423 -1.207 -2.297 -0.126 C07  86F 6  
86F C08  C7  C 0 1 N N S N N N -19.271 12.872 -0.882 -0.251 -1.166 -0.590 C08  86F 7  
86F C09  C8  C 0 1 N N N N N N -18.715 13.643 -2.171 1.152  -1.408 -0.097 C09  86F 8  
86F C11  C9  C 0 1 N N N N N N -18.070 13.574 -4.713 3.467  -0.707 0.194  C11  86F 9  
86F C12  C10 C 0 1 N N N N N N -19.198 13.901 -5.771 4.343  0.501  -0.145 C12  86F 10 
86F C14  C11 C 0 1 N N N N N N -17.631 15.749 -6.451 6.609  1.418  0.029  C14  86F 11 
86F N01  N1  N 0 1 N N N N N N -18.470 15.124 2.789  -2.952 2.079  0.185  N01  86F 12 
86F N05  N2  N 0 1 N N N N N N -18.016 13.692 1.004  -2.332 -0.153 0.031  N05  86F 13 
86F N10  N3  N 0 1 N N N N N N -18.589 12.954 -3.443 2.103  -0.472 -0.286 N10  86F 14 
86F O16  O1  O 0 1 N N N N N N -18.360 14.798 -2.042 1.425  -2.444 0.470  O16  86F 15 
86F H132 H1  H 0 0 N N N N N N -19.348 15.193 -7.545 5.753  0.109  1.435  H132 86F 16 
86F H131 H2  H 0 0 N N N N N N -19.671 16.038 -5.992 6.174  -0.634 -0.126 H131 86F 17 
86F H151 H3  H 0 0 N N N N N N -15.480 16.405 -6.375 7.881  3.174  -0.464 H151 86F 18 
86F H171 H4  H 0 0 N N N N N N -19.306 14.935 -0.158 -0.552 0.132  1.139  H171 86F 19 
86F H172 H5  H 0 0 N N N N N N -20.148 13.763 0.912  -0.606 0.982  -0.435 H172 86F 20 
86F H061 H7  H 0 0 N N N N N N -16.475 13.207 -0.434 -3.125 -1.802 -1.014 H061 86F 21 
86F H062 H8  H 0 0 N N N N N N -16.541 12.110 0.987  -3.158 -1.948 0.764  H062 86F 22 
86F H072 H9  H 0 0 N N N N N N -17.764 11.332 -1.287 -0.930 -2.653 0.866  H072 86F 23 
86F H071 H10 H 0 0 N N N N N N -18.634 11.119 0.270  -1.211 -3.120 -0.842 H071 86F 24 
86F H081 H11 H 0 0 N N N N N N -20.256 12.415 -1.059 -0.270 -1.059 -1.674 H081 86F 25 
86F H111 H12 H 0 0 N N N N N N -17.554 14.511 -4.456 3.874  -1.597 -0.288 H111 86F 26 
86F H112 H13 H 0 0 N N N N N N -17.355 12.876 -5.173 3.453  -0.853 1.274  H112 86F 27 
86F H122 H14 H 0 0 N N N N N N -19.188 13.112 -6.538 3.937  1.391  0.336  H122 86F 28 
86F H121 H15 H 0 0 N N N N N N -20.168 13.896 -5.252 4.357  0.647  -1.225 H121 86F 29 
86F H011 H16 H 0 0 N N N N N N -18.240 15.282 3.749  -3.632 2.769  0.215  H011 86F 30 
86F H101 H17 H 0 0 N N N N N N -18.868 11.994 -3.478 1.885  0.357  -0.739 H101 86F 31 
86F S1   S1  S 0 1 N N N N N N ?       ?      ?      -5.002 0.388  -0.022 S1   86F 32 
86F C2   C12 C 0 1 N N N N N N ?       ?      ?      -5.755 2.031  0.081  C2   86F 33 
86F H1   H17 H 0 1 N N N N N N ?       ?      ?      -5.471 2.503  1.022  H1   86F 34 
86F H2   H18 H 0 1 N N N N N N ?       ?      ?      -5.407 2.642  -0.752 H2   86F 35 
86F H3   H19 H 0 1 N N N N N N ?       ?      ?      -6.840 1.937  0.035  H3   86F 36 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
86F C02 N01  DOUB N N 1  
86F N05 C02  SING N N 2  
86F C06 N05  SING N N 3  
86F C07 C06  SING N N 4  
86F C08 C07  SING N N 5  
86F C11 N10  SING N N 6  
86F C12 C11  SING N N 7  
86F C13 C12  SING N N 8  
86F C14 C13  SING N N 9  
86F C15 C14  TRIP N N 10 
86F N10 C09  SING N N 11 
86F O16 C09  DOUB N N 12 
86F C09 C08  SING N N 13 
86F C17 C08  SING N N 14 
86F N05 C17  SING N N 15 
86F C13 H132 SING N N 16 
86F C13 H131 SING N N 17 
86F C15 H151 SING N N 18 
86F C17 H171 SING N N 19 
86F C17 H172 SING N N 20 
86F C06 H061 SING N N 21 
86F C06 H062 SING N N 22 
86F C07 H072 SING N N 23 
86F C07 H071 SING N N 24 
86F C08 H081 SING N N 25 
86F C11 H111 SING N N 26 
86F C11 H112 SING N N 27 
86F C12 H122 SING N N 28 
86F C12 H121 SING N N 29 
86F N01 H011 SING N N 30 
86F N10 H101 SING N N 31 
86F C02 S1   SING N N 32 
86F S1  C2   SING N N 33 
86F C2  H1   SING N N 34 
86F C2  H2   SING N N 35 
86F C2  H3   SING N N 36 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
86F InChI            InChI                1.06  "InChI=1S/C12H19N3OS/c1-3-4-5-7-14-11(16)10-6-8-15(9-10)12(13)17-2/h1,10,13H,4-9H2,2H3,(H,14,16)/b13-12-/t10-/m0/s1" 
86F InChIKey         InChI                1.06  WCNBRLZMISSXRP-AGKQBQDBSA-N                                                                                          
86F SMILES_CANONICAL CACTVS               3.385 "CSC(=N)N1CC[C@@H](C1)C(=O)NCCCC#C"                                                                                  
86F SMILES           CACTVS               3.385 "CSC(=N)N1CC[CH](C1)C(=O)NCCCC#C"                                                                                    
86F SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "[H]/N=C(/N1CC[C@@H](C1)C(=O)NCCCC#C)\SC"                                                                            
86F SMILES           "OpenEye OEToolkits" 2.0.7 "CSC(=N)N1CCC(C1)C(=O)NCCCC#C"                                                                                       
# 
_pdbx_chem_comp_identifier.comp_id           86F 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "methyl (3~{S})-3-(pent-4-ynylcarbamoyl)pyrrolidine-1-carboximidothioate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
86F "Create component" 2023-07-13 EBI  
86F "Initial release"  2024-01-31 RCSB 
86F "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            86F 
_pdbx_chem_comp_pcm.modified_residue_id                CYS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C02 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   SG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
