data_8AF
# 
_chem_comp.id                                    8AF 
_chem_comp.name                                  "[(2~{R},3~{S},5~{R})-5-[2-azanyl-8-(9~{H}-fluoren-3-ylamino)-6-oxidanylidene-3~{H}-purin-9-yl]-3-oxidanyl-oxolan-2-yl]methyl dihydrogen phosphite" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C23 H23 N6 O6 P" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2016-06-22 
_chem_comp.pdbx_modified_date                    2017-05-05 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        510.439 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     8AF 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        5LCL 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  EBI 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
8AF P     P1  P 0 1 N N N 24.084 60.972 -24.031 5.460  2.859  1.090  P     8AF 1  
8AF OP1   O1  O 0 1 N N N 24.612 62.057 -23.139 6.964  2.878  0.514  OP1   8AF 2  
8AF "O5'" O2  O 0 1 N N N 22.540 61.203 -24.277 4.897  1.467  0.508  "O5'" 8AF 3  
8AF "C5'" C1  C 0 1 N N N 21.786 60.045 -24.546 4.245  1.361  -0.759 "C5'" 8AF 4  
8AF "C4'" C2  C 0 1 N N R 21.086 60.332 -25.857 3.837  -0.094 -1.002 "C4'" 8AF 5  
8AF "C3'" C3  C 0 1 N N S 19.920 59.480 -25.663 3.243  -0.257 -2.419 "C3'" 8AF 6  
8AF "O3'" O3  O 0 1 N N N 18.799 60.316 -25.675 4.231  -0.759 -3.321 "O3'" 8AF 7  
8AF "C2'" C4  C 0 1 N N N 19.784 58.486 -26.748 2.104  -1.283 -2.232 "C2'" 8AF 8  
8AF "C1'" C5  C 0 1 N N R 20.811 58.872 -27.735 2.144  -1.620 -0.725 "C1'" 8AF 9  
8AF "O4'" O4  O 0 1 N N N 21.628 59.880 -27.105 2.768  -0.473 -0.108 "O4'" 8AF 10 
8AF N9    N1  N 0 1 Y N N 21.705 57.776 -28.125 0.786  -1.802 -0.206 N9    8AF 11 
8AF C4    C6  C 0 1 Y N N 22.590 57.109 -27.377 0.215  -2.986 0.163  C4    8AF 12 
8AF C5    C7  C 0 1 Y N N 23.273 56.211 -28.341 -1.071 -2.688 0.590  C5    8AF 13 
8AF N7    N2  N 0 1 Y N N 22.770 56.416 -29.596 -1.241 -1.347 0.469  N7    8AF 14 
8AF C8    C8  C 0 1 Y N N 21.865 57.397 -29.402 -0.139 -0.816 0.002  C8    8AF 15 
8AF N3    N3  N 0 1 N N N 22.933 57.092 -26.058 0.636  -4.291 0.187  N3    8AF 16 
8AF C2    C9  C 0 1 N N N 23.907 56.254 -25.627 -0.192 -5.275 0.623  C2    8AF 17 
8AF N2    N4  N 0 1 N N N 24.268 56.215 -24.334 0.266  -6.566 0.633  N2    8AF 18 
8AF N1    N5  N 0 1 N N N 24.551 55.422 -26.442 -1.418 -5.036 1.036  N1    8AF 19 
8AF C6    C10 C 0 1 N N N 24.317 55.353 -27.758 -1.920 -3.791 1.049  C6    8AF 20 
8AF O6    O5  O 0 1 N N N 24.974 54.573 -28.484 -3.059 -3.581 1.435  O6    8AF 21 
8AF OP2   O6  O 0 1 N N N 24.284 59.546 -23.575 5.700  2.501  2.641  OP2   8AF 22 
8AF N4    N6  N 0 1 N N N 21.020 58.122 -30.198 0.056  0.531  -0.251 N4    8AF 23 
8AF C12   C11 C 0 1 Y N N 20.697 58.229 -31.530 -1.009 1.428  -0.119 C12   8AF 24 
8AF C13   C12 C 0 1 Y N N 19.324 58.156 -31.643 -0.758 2.767  0.156  C13   8AF 25 
8AF C14   C13 C 0 1 Y N N 18.665 58.072 -32.842 -1.809 3.655  0.286  C14   8AF 26 
8AF C15   C14 C 0 1 Y N N 19.389 58.079 -33.990 -3.109 3.216  0.143  C15   8AF 27 
8AF C16   C15 C 0 1 Y N N 20.772 58.174 -33.942 -3.374 1.876  -0.133 C16   8AF 28 
8AF C17   C16 C 0 1 Y N N 21.493 58.257 -32.714 -2.313 0.982  -0.269 C17   8AF 29 
8AF C18   C17 C 0 1 N N N 18.869 57.995 -35.332 -4.434 3.932  0.234  C18   8AF 30 
8AF C19   C18 C 0 1 Y N N 19.967 58.059 -36.238 -5.492 2.885  -0.014 C19   8AF 31 
8AF C20   C19 C 0 1 Y N N 21.185 58.156 -35.385 -4.841 1.674  -0.236 C20   8AF 32 
8AF C1    C20 C 0 1 Y N N 20.064 58.046 -37.624 -6.868 2.952  -0.059 C1    8AF 33 
8AF C3    C21 C 0 1 Y N N 21.354 58.109 -38.178 -7.609 1.814  -0.326 C3    8AF 34 
8AF C7    C22 C 0 1 Y N N 22.502 58.191 -37.373 -6.971 0.607  -0.548 C7    8AF 35 
8AF C9    C23 C 0 1 Y N N 22.431 58.227 -35.971 -5.595 0.528  -0.495 C9    8AF 36 
8AF H1    H1  H 0 1 N N N 25.540 61.921 -22.989 7.022  3.081  -0.429 H1    8AF 37 
8AF H2    H2  H 0 1 N N N 21.052 59.867 -23.746 3.357  1.993  -0.765 H2    8AF 38 
8AF H3    H3  H 0 1 N N N 22.444 59.169 -24.642 4.926  1.683  -1.546 H3    8AF 39 
8AF H4    H4  H 0 1 N N N 20.795 61.392 -25.907 4.695  -0.754 -0.872 H4    8AF 40 
8AF H5    H5  H 0 1 N N N 20.000 58.958 -24.698 2.847  0.693  -2.778 H5    8AF 41 
8AF H6    H6  H 0 1 N N N 18.876 60.960 -24.981 3.911  -0.880 -4.226 H6    8AF 42 
8AF H7    H7  H 0 1 N N N 18.780 58.532 -27.194 1.144  -0.841 -2.499 H7    8AF 43 
8AF H8    H8  H 0 1 N N N 19.971 57.470 -26.370 2.292  -2.175 -2.830 H8    8AF 44 
8AF H9    H9  H 0 1 N N N 20.324 59.288 -28.629 2.741  -2.515 -0.552 H9    8AF 45 
8AF H10   H10 H 0 1 N N N 22.468 57.696 -25.411 1.533  -4.513 -0.109 H10   8AF 46 
8AF H11   H11 H 0 1 N N N 24.984 55.585 -24.034 1.167  -6.763 0.332  H11   8AF 47 
8AF H12   H12 H 0 1 N N N 23.821 56.816 -23.672 -0.310 -7.283 0.940  H12   8AF 48 
8AF H13   H13 H 0 1 N N N 25.208 59.389 -23.422 6.047  3.236  3.165  H13   8AF 49 
8AF H14   H14 H 0 1 N N N 20.479 58.761 -29.651 0.931  0.853  -0.519 H14   8AF 50 
8AF H15   H15 H 0 1 N N N 18.736 58.166 -30.737 0.259  3.113  0.269  H15   8AF 51 
8AF H16   H16 H 0 1 N N N 17.588 58.001 -32.873 -1.612 4.695  0.500  H16   8AF 52 
8AF H17   H17 H 0 1 N N N 22.570 58.336 -32.682 -2.507 -0.059 -0.484 H17   8AF 53 
8AF H18   H18 H 0 1 N N N 18.182 58.834 -35.519 -4.560 4.364  1.227  H18   8AF 54 
8AF H19   H19 H 0 1 N N N 18.331 57.045 -35.465 -4.492 4.712  -0.525 H19   8AF 55 
8AF H20   H20 H 0 1 N N N 19.185 57.990 -38.249 -7.368 3.893  0.114  H20   8AF 56 
8AF H21   H21 H 0 1 N N N 21.466 58.094 -39.252 -8.687 1.868  -0.360 H21   8AF 57 
8AF H22   H22 H 0 1 N N N 23.471 58.228 -37.848 -7.553 -0.279 -0.755 H22   8AF 58 
8AF H23   H23 H 0 1 N N N 23.325 58.308 -35.370 -5.100 -0.416 -0.669 H23   8AF 59 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
8AF C3    C1    SING Y N 1  
8AF C3    C7    DOUB Y N 2  
8AF C1    C19   DOUB Y N 3  
8AF C7    C9    SING Y N 4  
8AF C19   C20   SING Y N 5  
8AF C19   C18   SING N N 6  
8AF C9    C20   DOUB Y N 7  
8AF C20   C16   SING N N 8  
8AF C18   C15   SING N N 9  
8AF C15   C16   SING Y N 10 
8AF C15   C14   DOUB Y N 11 
8AF C16   C17   DOUB Y N 12 
8AF C14   C13   SING Y N 13 
8AF C17   C12   SING Y N 14 
8AF C13   C12   DOUB Y N 15 
8AF C12   N4    SING N N 16 
8AF N4    C8    SING N N 17 
8AF N7    C8    DOUB Y N 18 
8AF N7    C5    SING Y N 19 
8AF C8    N9    SING Y N 20 
8AF O6    C6    DOUB N N 21 
8AF C5    C6    SING N N 22 
8AF C5    C4    DOUB Y N 23 
8AF N9    "C1'" SING N N 24 
8AF N9    C4    SING Y N 25 
8AF C6    N1    SING N N 26 
8AF "C1'" "O4'" SING N N 27 
8AF "C1'" "C2'" SING N N 28 
8AF C4    N3    SING N N 29 
8AF "O4'" "C4'" SING N N 30 
8AF "C2'" "C3'" SING N N 31 
8AF N1    C2    DOUB N N 32 
8AF N3    C2    SING N N 33 
8AF "C4'" "C3'" SING N N 34 
8AF "C4'" "C5'" SING N N 35 
8AF "O3'" "C3'" SING N N 36 
8AF C2    N2    SING N N 37 
8AF "C5'" "O5'" SING N N 38 
8AF "O5'" P     SING N N 39 
8AF P     OP2   SING N N 40 
8AF P     OP1   SING N N 41 
8AF OP1   H1    SING N N 42 
8AF "C5'" H2    SING N N 43 
8AF "C5'" H3    SING N N 44 
8AF "C4'" H4    SING N N 45 
8AF "C3'" H5    SING N N 46 
8AF "O3'" H6    SING N N 47 
8AF "C2'" H7    SING N N 48 
8AF "C2'" H8    SING N N 49 
8AF "C1'" H9    SING N N 50 
8AF N3    H10   SING N N 51 
8AF N2    H11   SING N N 52 
8AF N2    H12   SING N N 53 
8AF OP2   H13   SING N N 54 
8AF N4    H14   SING N N 55 
8AF C13   H15   SING N N 56 
8AF C14   H16   SING N N 57 
8AF C17   H17   SING N N 58 
8AF C18   H18   SING N N 59 
8AF C18   H19   SING N N 60 
8AF C1    H20   SING N N 61 
8AF C3    H21   SING N N 62 
8AF C7    H22   SING N N 63 
8AF C9    H23   SING N N 64 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
8AF InChI            InChI                1.03  
"InChI=1S/C23H23N6O6P/c24-22-27-20-19(21(31)28-22)26-23(29(20)18-9-16(30)17(35-18)10-34-36(32)33)25-13-6-5-12-7-11-3-1-2-4-14(11)15(12)8-13/h1-6,8,16-18,30,32-33H,7,9-10H2,(H,25,26)(H3,24,27,28,31)/t16-,17+,18+/m0/s1" 
8AF InChIKey         InChI                1.03  VSBNWWDZIACPPS-RCCFBDPRSA-N 
8AF SMILES_CANONICAL CACTVS               3.385 "NC1=NC(=O)c2nc(Nc3ccc4Cc5ccccc5c4c3)n([C@H]6C[C@H](O)[C@@H](COP(O)O)O6)c2N1" 
8AF SMILES           CACTVS               3.385 "NC1=NC(=O)c2nc(Nc3ccc4Cc5ccccc5c4c3)n([CH]6C[CH](O)[CH](COP(O)O)O6)c2N1" 
8AF SMILES_CANONICAL "OpenEye OEToolkits" 2.0.5 "c1ccc-2c(c1)Cc3c2cc(cc3)Nc4nc5c(n4[C@H]6C[C@@H]([C@H](O6)COP(O)O)O)NC(=NC5=O)N" 
8AF SMILES           "OpenEye OEToolkits" 2.0.5 "c1ccc-2c(c1)Cc3c2cc(cc3)Nc4nc5c(n4C6CC(C(O6)COP(O)O)O)NC(=NC5=O)N" 
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
8AF "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.5 "[(2~{R},3~{S},5~{R})-5-[2-azanyl-8-(9~{H}-fluoren-3-ylamino)-6-oxidanylidene-3~{H}-purin-9-yl]-3-oxidanyl-oxolan-2-yl]methyl dihydrogen phosphite" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
8AF "Create component" 2016-06-22 EBI  
8AF "Initial release"  2017-05-10 RCSB 
# 
