data_9DF
# 
_chem_comp.id                                    9DF 
_chem_comp.name                                  "(6S,9aS)-6-[(2S)-butan-2-yl]-8-(naphthalen-1-ylmethyl)-4,7-bis(oxidanylidene)-N-[4,4,4-tris(fluoranyl)butyl]-3,6,9,9a-tetrahydro-2H-pyrazino[1,2-a]pyrimidine-1-carboxamide" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C27 H33 F3 N4 O3" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2022-01-13 
_chem_comp.pdbx_modified_date                    2022-11-11 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        518.571 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     9DF 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7WH5 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBJ 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
9DF C10 C1  C 0 1 N N N -16.251 -13.900 31.188 -3.211 -1.358 2.729  C10 9DF 1  
9DF C2  C2  C 0 1 N N N -15.819 -12.680 35.752 -0.164 -2.593 -1.464 C2  9DF 2  
9DF C4  C3  C 0 1 N N N -15.655 -15.019 36.625 -2.498 -2.862 -2.124 C4  9DF 3  
9DF C6  C4  C 0 1 N N N -17.230 -15.982 34.918 -3.952 -2.015 -0.313 C6  9DF 4  
9DF C9  C5  C 0 1 N N S -17.066 -15.100 31.675 -2.892 0.014  2.132  C9  9DF 5  
9DF N3  N1  N 0 1 N N N -15.607 -13.987 35.609 -1.433 -2.143 -1.413 N3  9DF 6  
9DF O1  O1  O 0 1 N N N -15.529 -11.892 34.864 0.117  -3.542 -2.171 O1  9DF 7  
9DF C5  C6  C 0 1 N N N -17.001 -15.693 36.388 -3.574 -3.240 -1.099 C5  9DF 8  
9DF C8  C7  C 0 1 N N S -16.355 -16.073 32.646 -3.536 0.131  0.749  C8  9DF 9  
9DF C11 C8  C 0 1 N N N -16.618 -13.528 29.769 -2.466 -1.523 4.055  C11 9DF 10 
9DF C17 C9  C 0 1 N N S -15.331 -14.553 34.303 -1.752 -0.939 -0.650 C17 9DF 11 
9DF C18 C10 C 0 1 N N N -14.047 -15.380 34.350 -1.661 0.285  -1.566 C18 9DF 12 
9DF C20 C11 C 0 1 N N N -12.610 -16.690 32.841 -1.813 2.776  -1.398 C20 9DF 13 
9DF C21 C12 C 0 1 Y N N -11.484 -15.684 32.725 -0.601 3.236  -0.630 C21 9DF 14 
9DF C22 C13 C 0 1 Y N N -11.204 -15.052 31.514 0.686  2.859  -1.049 C22 9DF 15 
9DF C23 C14 C 0 1 Y N N -11.980 -15.317 30.391 0.877  2.052  -2.184 C23 9DF 16 
9DF C24 C15 C 0 1 Y N N -11.704 -14.674 29.189 2.139  1.707  -2.560 C24 9DF 17 
9DF C25 C16 C 0 1 Y N N -10.653 -13.766 29.107 3.247  2.142  -1.837 C25 9DF 18 
9DF C26 C17 C 0 1 Y N N -9.874  -13.495 30.229 3.101  2.924  -0.733 C26 9DF 19 
9DF C27 C18 C 0 1 Y N N -10.153 -14.138 31.430 1.814  3.301  -0.314 C27 9DF 20 
9DF C28 C19 C 0 1 Y N N -9.375  -13.867 32.550 1.623  4.109  0.821  C28 9DF 21 
9DF C29 C20 C 0 1 Y N N -9.643  -14.508 33.755 0.362  4.454  1.197  C29 9DF 22 
9DF C30 C21 C 0 1 Y N N -10.689 -15.421 33.838 -0.747 4.023  0.471  C30 9DF 23 
9DF C31 C22 C 0 1 N N N -14.940 -16.391 32.234 -3.099 1.413  0.096  C31 9DF 24 
9DF C35 C23 C 0 1 N N N -16.661 -10.883 37.192 2.149  -2.548 -0.700 C35 9DF 25 
9DF C36 C24 C 0 1 N N N -15.397 -10.093 37.425 3.035  -1.681 0.197  C36 9DF 26 
9DF C37 C25 C 0 1 N N N -15.555 -8.679  36.926 4.450  -2.263 0.232  C37 9DF 27 
9DF C38 C26 C 0 1 N N N -14.729 -7.766  37.803 5.336  -1.396 1.129  C38 9DF 28 
9DF C46 C27 C 0 1 N N N -18.419 -14.611 32.189 -3.446 1.109  3.046  C46 9DF 29 
9DF F40 F1  F 0 1 N N N -14.062 -8.477  38.696 6.629  -1.928 1.161  F40 9DF 30 
9DF F41 F2  F 0 1 N N N -13.871 -7.100  37.053 5.380  -0.093 0.621  F41 9DF 31 
9DF F42 F3  F 0 1 N N N -15.529 -6.907  38.412 4.809  -1.374 2.424  F42 9DF 32 
9DF N7  N2  N 0 1 N N N -16.356 -15.537 34.001 -3.105 -1.001 -0.093 N7  9DF 33 
9DF N19 N3  N 0 1 N N N -13.936 -16.131 33.091 -2.228 1.458  -0.913 N19 9DF 34 
9DF N34 N4  N 0 1 N N N -16.368 -12.273 36.892 0.795  -1.991 -0.733 N34 9DF 35 
9DF O32 O2  O 0 1 N N N -14.740 -16.883 31.134 -3.562 2.457  0.507  O32 9DF 36 
9DF O33 O3  O 0 1 N N N -18.209 -16.636 34.601 -5.074 -1.943 0.143  O33 9DF 37 
9DF H1  H1  H 0 1 N N N -15.181 -14.153 31.227 -4.284 -1.439 2.902  H1  9DF 38 
9DF H2  H2  H 0 1 N N N -16.449 -13.041 31.846 -2.895 -2.138 2.036  H2  9DF 39 
9DF H3  H3  H 0 1 N N N -14.829 -15.735 36.497 -2.928 -2.220 -2.891 H3  9DF 40 
9DF H4  H4  H 0 1 N N N -15.607 -14.581 37.633 -2.092 -3.764 -2.582 H4  9DF 41 
9DF H5  H5  H 0 1 N N N -17.287 -15.693 30.775 -1.812 0.129  2.041  H5  9DF 42 
9DF H6  H6  H 0 1 N N N -17.801 -15.030 36.750 -4.452 -3.626 -1.617 H6  9DF 43 
9DF H7  H7  H 0 1 N N N -17.029 -16.640 36.946 -3.184 -4.001 -0.423 H7  9DF 44 
9DF H8  H8  H 0 1 N N N -16.925 -17.014 32.643 -4.621 0.120  0.849  H8  9DF 45 
9DF H9  H9  H 0 1 N N N -16.017 -12.664 29.449 -2.693 -2.500 4.481  H9  9DF 46 
9DF H10 H10 H 0 1 N N N -16.419 -14.381 29.103 -1.393 -1.442 3.882  H10 9DF 47 
9DF H11 H11 H 0 1 N N N -17.686 -13.269 29.723 -2.782 -0.743 4.748  H11 9DF 48 
9DF H12 H12 H 0 1 N N N -15.266 -13.778 33.525 -1.040 -0.831 0.168  H12 9DF 49 
9DF H13 H13 H 0 1 N N N -14.086 -16.079 35.198 -0.616 0.478  -1.805 H13 9DF 50 
9DF H14 H14 H 0 1 N N N -13.179 -14.714 34.463 -2.210 0.087  -2.486 H14 9DF 51 
9DF H15 H15 H 0 1 N N N -12.654 -17.257 31.900 -2.626 3.488  -1.255 H15 9DF 52 
9DF H16 H16 H 0 1 N N N -12.369 -17.372 33.669 -1.569 2.712  -2.459 H16 9DF 53 
9DF H17 H17 H 0 1 N N N -12.796 -16.021 30.452 0.027  1.707  -2.754 H17 9DF 54 
9DF H18 H18 H 0 1 N N N -12.307 -14.880 28.317 2.283  1.086  -3.433 H18 9DF 55 
9DF H19 H19 H 0 1 N N N -10.441 -13.270 28.171 4.238  1.854  -2.157 H19 9DF 56 
9DF H20 H20 H 0 1 N N N -9.058  -12.790 30.167 3.970  3.254  -0.182 H20 9DF 57 
9DF H21 H21 H 0 1 N N N -8.562  -13.159 32.484 2.473  4.453  1.391  H21 9DF 58 
9DF H22 H22 H 0 1 N N N -9.039  -14.297 34.625 0.218  5.074  2.069  H22 9DF 59 
9DF H23 H23 H 0 1 N N N -10.886 -15.929 34.771 -1.737 4.315  0.788  H23 9DF 60 
9DF H24 H24 H 0 1 N N N -17.208 -10.442 36.346 2.560  -2.565 -1.709 H24 9DF 61 
9DF H25 H25 H 0 1 N N N -17.285 -10.836 38.097 2.115  -3.563 -0.304 H25 9DF 62 
9DF H26 H26 H 0 1 N N N -14.566 -10.575 36.889 3.070  -0.666 -0.198 H26 9DF 63 
9DF H27 H27 H 0 1 N N N -15.176 -10.074 38.502 2.625  -1.664 1.207  H27 9DF 64 
9DF H28 H28 H 0 1 N N N -15.204 -8.611  35.886 4.416  -3.278 0.627  H28 9DF 65 
9DF H29 H29 H 0 1 N N N -16.613 -8.384  36.976 4.861  -2.280 -0.777 H29 9DF 66 
9DF H30 H30 H 0 1 N N N -19.010 -15.469 32.541 -4.533 1.037  3.081  H30 9DF 67 
9DF H31 H31 H 0 1 N N N -18.263 -13.908 33.020 -3.041 0.983  4.050  H31 9DF 68 
9DF H32 H32 H 0 1 N N N -18.958 -14.103 31.376 -3.159 2.086  2.658  H32 9DF 69 
9DF H33 H33 H 0 1 N N N -16.592 -12.962 37.581 0.588  -1.188 -0.228 H33 9DF 70 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
9DF C25 C24 DOUB Y N 1  
9DF C25 C26 SING Y N 2  
9DF C24 C23 SING Y N 3  
9DF C11 C10 SING N N 4  
9DF C26 C27 DOUB Y N 5  
9DF C23 C22 DOUB Y N 6  
9DF O32 C31 DOUB N N 7  
9DF C10 C9  SING N N 8  
9DF C27 C22 SING Y N 9  
9DF C27 C28 SING Y N 10 
9DF C22 C21 SING Y N 11 
9DF C9  C46 SING N N 12 
9DF C9  C8  SING N N 13 
9DF C31 C8  SING N N 14 
9DF C31 N19 SING N N 15 
9DF C28 C29 DOUB Y N 16 
9DF C8  N7  SING N N 17 
9DF C21 C20 SING N N 18 
9DF C21 C30 DOUB Y N 19 
9DF C20 N19 SING N N 20 
9DF N19 C18 SING N N 21 
9DF C29 C30 SING Y N 22 
9DF N7  C17 SING N N 23 
9DF N7  C6  SING N N 24 
9DF C17 C18 SING N N 25 
9DF C17 N3  SING N N 26 
9DF O33 C6  DOUB N N 27 
9DF O1  C2  DOUB N N 28 
9DF C6  C5  SING N N 29 
9DF N3  C2  SING N N 30 
9DF N3  C4  SING N N 31 
9DF C2  N34 SING N N 32 
9DF C5  C4  SING N N 33 
9DF N34 C35 SING N N 34 
9DF C37 C36 SING N N 35 
9DF C37 C38 SING N N 36 
9DF F41 C38 SING N N 37 
9DF C35 C36 SING N N 38 
9DF C38 F42 SING N N 39 
9DF C38 F40 SING N N 40 
9DF C10 H1  SING N N 41 
9DF C10 H2  SING N N 42 
9DF C4  H3  SING N N 43 
9DF C4  H4  SING N N 44 
9DF C9  H5  SING N N 45 
9DF C5  H6  SING N N 46 
9DF C5  H7  SING N N 47 
9DF C8  H8  SING N N 48 
9DF C11 H9  SING N N 49 
9DF C11 H10 SING N N 50 
9DF C11 H11 SING N N 51 
9DF C17 H12 SING N N 52 
9DF C18 H13 SING N N 53 
9DF C18 H14 SING N N 54 
9DF C20 H15 SING N N 55 
9DF C20 H16 SING N N 56 
9DF C23 H17 SING N N 57 
9DF C24 H18 SING N N 58 
9DF C25 H19 SING N N 59 
9DF C26 H20 SING N N 60 
9DF C28 H21 SING N N 61 
9DF C29 H22 SING N N 62 
9DF C30 H23 SING N N 63 
9DF C35 H24 SING N N 64 
9DF C35 H25 SING N N 65 
9DF C36 H26 SING N N 66 
9DF C36 H27 SING N N 67 
9DF C37 H28 SING N N 68 
9DF C37 H29 SING N N 69 
9DF C46 H30 SING N N 70 
9DF C46 H31 SING N N 71 
9DF C46 H32 SING N N 72 
9DF N34 H33 SING N N 73 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
9DF InChI            InChI                1.03  "InChI=1S/C27H33F3N4O3/c1-3-18(2)24-25(36)32(16-20-10-6-9-19-8-4-5-11-21(19)20)17-22-33(15-12-23(35)34(22)24)26(37)31-14-7-13-27(28,29)30/h4-6,8-11,18,22,24H,3,7,12-17H2,1-2H3,(H,31,37)/t18-,22+,24-/m0/s1" 
9DF InChIKey         InChI                1.03  KQOUYKFBWWUWOZ-ANJVHQHFSA-N                                                                                                                                                                                   
9DF SMILES_CANONICAL CACTVS               3.385 "CC[C@H](C)[C@@H]1N2[C@H](CN(Cc3cccc4ccccc34)C1=O)N(CCC2=O)C(=O)NCCCC(F)(F)F"                                                                                                                                 
9DF SMILES           CACTVS               3.385 "CC[CH](C)[CH]1N2[CH](CN(Cc3cccc4ccccc34)C1=O)N(CCC2=O)C(=O)NCCCC(F)(F)F"                                                                                                                                     
9DF SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC[C@H](C)[C@H]1C(=O)N(C[C@H]2N1C(=O)CCN2C(=O)NCCCC(F)(F)F)Cc3cccc4c3cccc4"                                                                                                                                  
9DF SMILES           "OpenEye OEToolkits" 2.0.7 "CCC(C)C1C(=O)N(CC2N1C(=O)CCN2C(=O)NCCCC(F)(F)F)Cc3cccc4c3cccc4"                                                                                                                                              
# 
_pdbx_chem_comp_identifier.comp_id           9DF 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "(6~{S},9~{a}~{S})-6-[(2~{S})-butan-2-yl]-8-(naphthalen-1-ylmethyl)-4,7-bis(oxidanylidene)-~{N}-[4,4,4-tris(fluoranyl)butyl]-3,6,9,9~{a}-tetrahydro-2~{H}-pyrazino[1,2-a]pyrimidine-1-carboxamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
9DF "Create component" 2022-01-13 PDBJ 
9DF "Initial release"  2022-11-16 RCSB 
# 
