data_ABF
#

_chem_comp.id                                   ABF
_chem_comp.name                                 5-O-phosphono-beta-D-arabinofuranose
_chem_comp.type                                 "D-saccharide, beta linking"
_chem_comp.pdbx_type                            ATOMS
_chem_comp.formula                              "C5 H11 O8 P"
_chem_comp.mon_nstd_parent_comp_id              BXX
_chem_comp.pdbx_synonyms                        
;BETA-D-ARABINOFURANOSE-5'-PHOSPHATE; 5-O-phosphono-beta-D-arabinose; 5-O-phosphono-D-arabinose;
5-O-phosphono-arabinose
;

_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2002-11-26
_chem_comp.pdbx_modified_date                   2020-07-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       230.110
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    ABF
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       ?
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       1O8B
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 EBI
#   #
loop_
_pdbx_chem_comp_synonyms.ordinal
_pdbx_chem_comp_synonyms.comp_id
_pdbx_chem_comp_synonyms.name
_pdbx_chem_comp_synonyms.provenance
_pdbx_chem_comp_synonyms.type
1  ABF  "BETA-D-ARABINOFURANOSE-5'-PHOSPHATE"  PDB  ?  
2  ABF  5-O-phosphono-beta-D-arabinose         PDB  ?  
3  ABF  5-O-phosphono-D-arabinose              PDB  ?  
4  ABF  5-O-phosphono-arabinose                PDB  ?  
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
ABF  C1     "C1'"   C  0  1  N  N  R  21.759  19.837  19.998   0.914  -0.666   2.750  C1     ABF   1  
ABF  O4     "O1'"   O  0  1  N  N  N  23.114  20.329  19.887   0.995  -0.486   1.319  O4     ABF   2  
ABF  C2     "C2'"   C  0  1  N  N  S  21.208  19.972  18.734  -0.357   0.099   3.175  C2     ABF   3  
ABF  O2     "O2'"   O  0  1  N  N  N  19.926  19.770  18.584  -0.028   1.423   3.599  O2     ABF   4  
ABF  C3     "C3'"   C  0  1  N  N  S  21.752  21.120  18.201  -1.217   0.139   1.889  C3     ABF   5  
ABF  O3     "O3'"   O  0  1  N  N  N  21.819  21.226  16.891  -2.460  -0.535   2.096  O3     ABF   6  
ABF  C4     "C4'"   C  0  1  N  N  R  22.938  21.346  18.866  -0.362  -0.609   0.843  C4     ABF   7  
ABF  C5     "C5'"   C  0  1  N  N  N  23.264  22.732  19.401  -0.506   0.044  -0.532  C5     ABF   8  
ABF  O5     "O5'"   O  0  1  N  N  N  24.638  22.781  19.857   0.347  -0.618  -1.466  O5     ABF   9  
ABF  "P'"   "P'"    P  0  1  N  N  N  25.341  24.082  20.497   0.146   0.118  -2.884  "P'"   ABF  10  
ABF  O1X    O1X     O  0  1  N  N  N  25.090  25.233  19.599   0.516   1.545  -2.755  O1X    ABF  11  
ABF  O2X    O2X     O  0  1  N  N  N  24.753  24.306  21.877   1.083  -0.582  -3.990  O2X    ABF  12  
ABF  O3X    O3X     O  0  1  N  N  N  26.753  23.616  20.574  -1.394   0.002  -3.335  O3X    ABF  13  
ABF  O1     O1      O  0  1  N  Y  N  21.099  20.454  20.919   2.066  -0.109   3.387  O1     ABF  14  
ABF  H1     "H1'"   H  0  1  N  N  N  21.727  18.784  20.314   0.820  -1.724   2.995  H1     ABF  15  
ABF  H2     "H2'"   H  0  1  N  N  N  21.490  19.104  18.121  -0.881  -0.435   3.968  H2     ABF  16  
ABF  HO2    HA      H  0  1  N  Y  N  19.745  18.797  18.563   0.504   1.336   4.400  HO2    ABF  17  
ABF  H3     "H3'"   H  0  1  N  N  N  21.036  21.936  18.376  -1.389   1.168   1.576  H3     ABF  18  
ABF  HO3    HB      H  0  1  N  Y  N  20.904  21.257  16.515  -2.948  -0.024   2.756  HO3    ABF  19  
ABF  H4     "H4'"   H  0  1  N  N  N  23.680  21.280  18.057  -0.654  -1.659   0.795  H4     ABF  20  
ABF  H51    "H5'1"  H  0  1  N  N  N  23.120  23.473  18.601  -1.540  -0.033  -0.865  H51    ABF  21  
ABF  H52    "H5'2"  H  0  1  N  N  N  22.597  22.957  20.246  -0.224   1.095  -0.465  H52    ABF  22  
ABF  "HO'"  "HO'"   H  0  1  N  N  N  24.571  23.432  22.305   0.933  -0.112  -4.822  "HO'"  ABF  23  
ABF  HOA    HOA     H  0  1  N  N  N  26.775  22.626  20.575  -1.594  -0.941  -3.407  HOA    ABF  24  
ABF  HO1    H1      H  0  1  N  Y  N  20.670  19.792  21.518   2.830  -0.607   3.067  HO1    ABF  25  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
ABF  C1     O4     SING  N  N   1  
ABF  C1     C2     SING  N  N   2  
ABF  C1     O1     SING  N  N   3  
ABF  C1     H1     SING  N  N   4  
ABF  O4     C4     SING  N  N   5  
ABF  C2     O2     SING  N  N   6  
ABF  C2     C3     SING  N  N   7  
ABF  C2     H2     SING  N  N   8  
ABF  O2     HO2    SING  N  N   9  
ABF  C3     O3     SING  N  N  10  
ABF  C3     C4     SING  N  N  11  
ABF  C3     H3     SING  N  N  12  
ABF  O3     HO3    SING  N  N  13  
ABF  C4     C5     SING  N  N  14  
ABF  C4     H4     SING  N  N  15  
ABF  C5     O5     SING  N  N  16  
ABF  C5     H51    SING  N  N  17  
ABF  C5     H52    SING  N  N  18  
ABF  O5     "P'"   SING  N  N  19  
ABF  "P'"   O1X    DOUB  N  N  20  
ABF  "P'"   O2X    SING  N  N  21  
ABF  "P'"   O3X    SING  N  N  22  
ABF  O2X    "HO'"  SING  N  N  23  
ABF  O3X    HOA    SING  N  N  24  
ABF  O1     HO1    SING  N  N  25  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
ABF  SMILES            ACDLabs               10.04  "O=P(O)(O)OCC1OC(O)C(O)C1O"  
ABF  SMILES_CANONICAL  CACTVS                3.341  "O[C@@H]1O[C@H](CO[P](O)(O)=O)[C@@H](O)[C@@H]1O"  
ABF  SMILES            CACTVS                3.341  "O[CH]1O[CH](CO[P](O)(O)=O)[CH](O)[CH]1O"  
ABF  SMILES_CANONICAL  "OpenEye OEToolkits"  1.5.0  "C([C@@H]1[C@H]([C@@H]([C@@H](O1)O)O)O)OP(=O)(O)O"  
ABF  SMILES            "OpenEye OEToolkits"  1.5.0  "C(C1C(C(C(O1)O)O)O)OP(=O)(O)O"  
ABF  InChI             InChI                 1.03   "InChI=1S/C5H11O8P/c6-3-2(1-12-14(9,10)11)13-5(8)4(3)7/h2-8H,1H2,(H2,9,10,11)/t2-,3-,4+,5-/m1/s1"  
ABF  InChIKey          InChI                 1.03   KTVPXOYAKDPRHY-SQOUGZDYSA-N  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
ABF  "SYSTEMATIC NAME"            ACDLabs               10.04  5-O-phosphono-beta-D-arabinofuranose  
ABF  "SYSTEMATIC NAME"            "OpenEye OEToolkits"  1.5.0  "[(2R,3S,4S,5R)-3,4,5-trihydroxyoxolan-2-yl]methyl dihydrogen phosphate"  
ABF  "IUPAC CARBOHYDRATE SYMBOL"  PDB-CARE              1.0    b-D-Araf5PO3  
#
_pdbx_chem_comp_related.comp_id            ABF
_pdbx_chem_comp_related.related_comp_id    BXX
_pdbx_chem_comp_related.relationship_type  "Carbohydrate core"
_pdbx_chem_comp_related.details            ?
#   #
loop_
_pdbx_chem_comp_atom_related.ordinal
_pdbx_chem_comp_atom_related.comp_id
_pdbx_chem_comp_atom_related.atom_id
_pdbx_chem_comp_atom_related.related_comp_id
_pdbx_chem_comp_atom_related.related_atom_id
_pdbx_chem_comp_atom_related.related_type
 1  ABF  C1   BXX  C1   "Carbohydrate core"  
 2  ABF  C2   BXX  C2   "Carbohydrate core"  
 3  ABF  C3   BXX  C3   "Carbohydrate core"  
 4  ABF  C4   BXX  C4   "Carbohydrate core"  
 5  ABF  C5   BXX  C5   "Carbohydrate core"  
 6  ABF  O1   BXX  O1   "Carbohydrate core"  
 7  ABF  O4   BXX  O4   "Carbohydrate core"  
 8  ABF  O2   BXX  O2   "Carbohydrate core"  
 9  ABF  O3   BXX  O3   "Carbohydrate core"  
10  ABF  O5   BXX  O5   "Carbohydrate core"  
11  ABF  HO1  BXX  HO1  "Carbohydrate core"  
12  ABF  H1   BXX  H1   "Carbohydrate core"  
13  ABF  H2   BXX  H2   "Carbohydrate core"  
14  ABF  H3   BXX  H3   "Carbohydrate core"  
15  ABF  H4   BXX  H4   "Carbohydrate core"  
16  ABF  H51  BXX  H51  "Carbohydrate core"  
17  ABF  H52  BXX  H52  "Carbohydrate core"  
18  ABF  HO2  BXX  HO2  "Carbohydrate core"  
19  ABF  HO3  BXX  HO3  "Carbohydrate core"  
#   #
loop_
_pdbx_chem_comp_feature.comp_id
_pdbx_chem_comp_feature.type
_pdbx_chem_comp_feature.value
_pdbx_chem_comp_feature.source
_pdbx_chem_comp_feature.support
ABF  "CARBOHYDRATE ISOMER"                  D         PDB  ?  
ABF  "CARBOHYDRATE RING"                    furanose  PDB  ?  
ABF  "CARBOHYDRATE ANOMER"                  beta      PDB  ?  
ABF  "CARBOHYDRATE PRIMARY CARBONYL GROUP"  aldose    PDB  ?  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
ABF  "Create component"          2002-11-26  EBI   
ABF  "Modify descriptor"         2011-06-04  RCSB  
ABF  "Other modification"        2020-07-03  RCSB  
ABF  "Modify parent residue"     2020-07-17  RCSB  
ABF  "Modify name"               2020-07-17  RCSB  
ABF  "Modify synonyms"           2020-07-17  RCSB  
ABF  "Modify linking type"       2020-07-17  RCSB  
ABF  "Modify atom id"            2020-07-17  RCSB  
ABF  "Modify component atom id"  2020-07-17  RCSB  
ABF  "Modify leaving atom flag"  2020-07-17  RCSB  
##
