data_AOF
# 
_chem_comp.id                                    AOF 
_chem_comp.name                                  "N-(5-amino-2,6-dioxo-1,2,3,6-tetrahydropyrimidin-4-yl)-5-O-phosphono-beta-D-ribofuranosylamine" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C9 H15 N4 O9 P" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2012-08-09 
_chem_comp.pdbx_modified_date                    2013-02-15 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        354.211 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     AOF 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        4G3M 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBJ 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
AOF C2    C2    C 0 1 N N N 85.021 10.730 42.120 3.633  1.238  -1.538 C2    AOF 1  
AOF N3    N3    N 0 1 N N N 83.910 10.638 43.028 4.658  1.657  -0.774 N3    AOF 2  
AOF O4    O4    O 0 1 N N N 83.111 9.935  45.029 5.694  1.648  1.197  O4    AOF 3  
AOF C5    C5    C 0 1 N N N 85.372 9.434  44.665 3.788  0.407  1.055  C5    AOF 4  
AOF C6    C6    C 0 1 N N N 86.439 9.548  43.735 2.752  -0.009 0.264  C6    AOF 5  
AOF O3P   O3P   O 0 1 N N N 87.386 3.330  41.821 -5.728 0.587  -0.085 O3P   AOF 6  
AOF P     P     P 0 1 N N N 88.042 3.656  43.125 -4.518 1.415  0.122  P     AOF 7  
AOF O1P   O1P   O 0 1 N N N 89.294 2.644  43.238 -4.612 2.739  -0.790 O1P   AOF 8  
AOF O2P   O2P   O 0 1 N N N 87.119 3.602  44.290 -4.415 1.837  1.672  O2P   AOF 9  
AOF "O5'" "O5'" O 0 1 N N N 88.921 4.992  43.020 -3.212 0.570  -0.293 "O5'" AOF 10 
AOF "C5'" "C5'" C 0 1 N N N 89.178 5.775  44.180 -2.906 -0.711 0.262  "C5'" AOF 11 
AOF "C4'" "C4'" C 0 1 N N R 90.042 6.954  43.805 -1.602 -1.231 -0.347 "C4'" AOF 12 
AOF "O4'" "O4'" O 0 1 N N N 89.062 7.614  42.972 -0.481 -0.451 0.123  "O4'" AOF 13 
AOF "C3'" "C3'" C 0 1 N N S 90.547 8.017  44.781 -1.315 -2.668 0.143  "C3'" AOF 14 
AOF "O3'" "O3'" O 0 1 N N N 91.919 7.597  44.703 -1.733 -3.623 -0.834 "O3'" AOF 15 
AOF "C2'" "C2'" C 0 1 N N R 90.097 9.329  44.120 0.219  -2.705 0.320  "C2'" AOF 16 
AOF "O2'" "O2'" O 0 1 N N N 91.256 9.855  43.483 0.799  -3.687 -0.542 "O2'" AOF 17 
AOF "C1'" "C1'" C 0 1 N N R 88.877 9.014  43.273 0.678  -1.287 -0.084 "C1'" AOF 18 
AOF "N1'" "N1'" N 0 1 N N N 87.662 9.039  44.027 1.784  -0.846 0.769  "N1'" AOF 19 
AOF N1    N1    N 0 1 N N N 86.303 10.182 42.464 2.688  0.419  -1.043 N1    AOF 20 
AOF O2    O2    O 0 1 N N N 84.796 9.891  41.219 3.557  1.610  -2.694 O2    AOF 21 
AOF C4    C4    C 0 1 N N N 84.096 9.990  44.289 4.762  1.264  0.511  C4    AOF 22 
AOF N5    N5    N 0 1 N N N 85.578 8.818  45.845 3.878  -0.017 2.401  N5    AOF 23 
AOF H1    H1    H 0 1 N N N 83.020 11.022 42.781 5.329  2.247  -1.151 H1    AOF 24 
AOF H2    H2    H 0 1 N N N 89.323 2.089  42.468 -5.377 3.298  -0.594 H2    AOF 25 
AOF H3    H3    H 0 1 N N N 86.248 3.363  43.994 -3.644 2.383  1.880  H3    AOF 26 
AOF H4    H4    H 0 1 N N N 88.227 6.135  44.598 -2.792 -0.621 1.342  H4    AOF 27 
AOF H5    H5    H 0 1 N N N 89.699 5.161  44.929 -3.714 -1.406 0.038  H5    AOF 28 
AOF H6    H6    H 0 1 N N N 90.885 6.604  43.191 -1.655 -1.205 -1.435 H6    AOF 29 
AOF H7    H7    H 0 1 N N N 90.110 7.894  45.783 -1.814 -2.853 1.095  H7    AOF 30 
AOF H8    H8    H 0 1 N N N 92.452 8.149  45.263 -1.577 -4.542 -0.577 H8    AOF 31 
AOF H9    H9    H 0 1 N N N 89.784 10.015 44.921 0.479  -2.909 1.359  H9    AOF 32 
AOF H10   H10   H 0 1 N N N 91.935 10.002 44.131 1.761  -3.753 -0.472 H10   AOF 33 
AOF H11   H11   H 0 1 N N N 88.837 9.642  42.371 0.978  -1.267 -1.132 H11   AOF 34 
AOF H12   H12   H 0 1 N N N 87.480 8.074  44.217 1.834  -1.144 1.691  H12   AOF 35 
AOF H13   H13   H 0 1 N N N 87.076 10.243 41.833 1.957  0.127  -1.610 H13   AOF 36 
AOF H14   H14   H 0 1 N N N 84.731 8.824  46.377 3.202  -0.607 2.770  H14   AOF 37 
AOF H15   H15   H 0 1 N N N 85.863 7.873  45.682 4.615  0.282  2.956  H15   AOF 38 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
AOF O2    C2    DOUB N N 1  
AOF O3P   P     DOUB N N 2  
AOF C2    N1    SING N N 3  
AOF C2    N3    SING N N 4  
AOF N1    C6    SING N N 5  
AOF "O4'" "C1'" SING N N 6  
AOF "O4'" "C4'" SING N N 7  
AOF "O5'" P     SING N N 8  
AOF "O5'" "C5'" SING N N 9  
AOF N3    C4    SING N N 10 
AOF P     O1P   SING N N 11 
AOF P     O2P   SING N N 12 
AOF "C1'" "N1'" SING N N 13 
AOF "C1'" "C2'" SING N N 14 
AOF "O2'" "C2'" SING N N 15 
AOF C6    "N1'" SING N N 16 
AOF C6    C5    DOUB N N 17 
AOF "C4'" "C5'" SING N N 18 
AOF "C4'" "C3'" SING N N 19 
AOF "C2'" "C3'" SING N N 20 
AOF C4    C5    SING N N 21 
AOF C4    O4    DOUB N N 22 
AOF C5    N5    SING N N 23 
AOF "O3'" "C3'" SING N N 24 
AOF N3    H1    SING N N 25 
AOF O1P   H2    SING N N 26 
AOF O2P   H3    SING N N 27 
AOF "C5'" H4    SING N N 28 
AOF "C5'" H5    SING N N 29 
AOF "C4'" H6    SING N N 30 
AOF "C3'" H7    SING N N 31 
AOF "O3'" H8    SING N N 32 
AOF "C2'" H9    SING N N 33 
AOF "O2'" H10   SING N N 34 
AOF "C1'" H11   SING N N 35 
AOF "N1'" H12   SING N N 36 
AOF N1    H13   SING N N 37 
AOF N5    H14   SING N N 38 
AOF N5    H15   SING N N 39 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
AOF SMILES           ACDLabs              12.01 "O=P(O)(O)OCC2OC(NC=1NC(=O)NC(=O)C=1N)C(O)C2O"                                                                                                                    
AOF InChI            InChI                1.03  "InChI=1S/C9H15N4O9P/c10-3-6(12-9(17)13-7(3)16)11-8-5(15)4(14)2(22-8)1-21-23(18,19)20/h2,4-5,8,14-15H,1,10H2,(H2,18,19,20)(H3,11,12,13,16,17)/t2-,4-,5-,8-/m1/s1" 
AOF InChIKey         InChI                1.03  LZEXYCAGPMYXLX-UMMCILCDSA-N                                                                                                                                       
AOF SMILES_CANONICAL CACTVS               3.370 "NC1=C(N[C@@H]2O[C@H](CO[P](O)(O)=O)[C@@H](O)[C@H]2O)NC(=O)NC1=O"                                                                                                 
AOF SMILES           CACTVS               3.370 "NC1=C(N[CH]2O[CH](CO[P](O)(O)=O)[CH](O)[CH]2O)NC(=O)NC1=O"                                                                                                       
AOF SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "C([C@@H]1[C@H]([C@H]([C@@H](O1)NC2=C(C(=O)NC(=O)N2)N)O)O)OP(=O)(O)O"                                                                                             
AOF SMILES           "OpenEye OEToolkits" 1.7.6 "C(C1C(C(C(O1)NC2=C(C(=O)NC(=O)N2)N)O)O)OP(=O)(O)O"                                                                                                               
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
AOF "SYSTEMATIC NAME" ACDLabs              12.01 "N-(5-amino-2,6-dioxo-1,2,3,6-tetrahydropyrimidin-4-yl)-5-O-phosphono-beta-D-ribofuranosylamine"                                       
AOF "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "[(2R,3S,4R,5R)-5-[[5-azanyl-2,4-bis(oxidanylidene)-1H-pyrimidin-6-yl]amino]-3,4-bis(oxidanyl)oxolan-2-yl]methyl dihydrogen phosphate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
AOF "Create component"   2012-08-09 PDBJ 
AOF "Modify name"        2012-10-05 PDBJ 
AOF "Modify value order" 2012-10-05 PDBJ 
AOF "Initial release"    2013-02-15 RCSB 
# 
