data_CIF
# 
_chem_comp.id                                    CIF 
_chem_comp.name                                  "methyl (1R,3S)-1-methyl-3-[[3-[[3-methyl-4-[(4-pyridin-3-ylpyrimidin-2-yl)amino]phenyl]carbamoyl]phenyl]carbamoyl]-4-oxidanylidene-cyclohexane-1-carboxylate" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C33 H32 N6 O5" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-07-17 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        592.644 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     CIF 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8PTA 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
CIF C16 C1  C 0 1 N N N N N N -3.365 -64.751 2.517  5.380   0.474  1.017  C16 CIF 1  
CIF C7  C2  C 0 1 N N N N N N -2.342 -62.842 -0.369 6.921   0.109  -0.954 C7  CIF 2  
CIF C14 C3  C 0 1 N N N N N N -4.144 -61.290 -0.698 9.369   0.103  -0.565 C14 CIF 3  
CIF C15 C4  C 0 1 N N N N N N -5.692 -59.927 -2.078 11.039  -0.604 -2.111 C15 CIF 4  
CIF C17 C5  C 0 1 Y N N N N N -2.247 -65.341 4.410  4.254   -1.600 0.713  C17 CIF 5  
CIF C18 C6  C 0 1 Y N N N N N -2.914 -66.508 4.525  4.447   -2.903 0.268  C18 CIF 6  
CIF C19 C7  C 0 1 Y N N N N N -2.529 -67.429 5.460  3.381   -3.640 -0.212 C19 CIF 7  
CIF C20 C8  C 0 1 Y N N N N N -1.489 -67.189 6.308  2.117   -3.087 -0.252 C20 CIF 8  
CIF C21 C9  C 0 1 Y N N N N N -0.829 -66.010 6.211  1.912   -1.780 0.192  C21 CIF 9  
CIF C22 C10 C 0 1 Y N N N N N -1.206 -65.124 5.247  2.989   -1.036 0.676  C22 CIF 10 
CIF C23 C11 C 0 1 N N N N N N 0.308  -65.712 7.122  0.560   -1.185 0.149  C23 CIF 11 
CIF C26 C12 C 0 1 Y N N N N N 1.579  -64.116 8.215  -1.740  -1.311 -0.454 C26 CIF 12 
CIF C27 C13 C 0 1 Y N N N N N 2.230  -62.993 7.847  -1.841  0.034  -0.787 C27 CIF 13 
CIF C28 C14 C 0 1 Y N N N N N 3.299  -62.517 8.530  -3.084  0.618  -0.925 C28 CIF 14 
CIF C29 C15 C 0 1 Y Y N N N N 3.760  -63.149 9.634  -4.233  -0.138 -0.730 C29 CIF 15 
CIF C2  C16 C 0 1 N N S N N N -4.443 -63.813 2.103  6.480   1.287  1.649  C2  CIF 16 
CIF C30 C17 C 0 1 Y N N N N N 3.092  -64.267 10.027 -4.131  -1.482 -0.397 C30 CIF 17 
CIF C31 C18 C 0 1 Y N N N N N 2.016  -64.759 9.326  -2.888  -2.067 -0.259 C31 CIF 18 
CIF C33 C19 C 0 1 Y N N N N N 5.860  -62.140 9.849  -6.575  -0.042 -0.162 C33 CIF 19 
CIF C35 C20 C 0 1 Y N N N N N 7.605  -60.701 10.056 -7.387  -1.521 1.409  C35 CIF 20 
CIF C36 C21 C 0 1 Y N N N N N 8.017  -60.972 8.780  -8.661  -1.015 1.218  C36 CIF 21 
CIF C37 C22 C 0 1 Y N N N N N 7.302  -61.882 8.055  -8.835  0.019  0.293  C37 CIF 22 
CIF C39 C23 C 0 1 N N N N N N 3.885  -61.279 7.977  -3.195  2.077  -1.286 C39 CIF 23 
CIF C1  C24 C 0 1 N N N N N N -5.396 -64.515 1.215  6.437   2.701  1.115  C1  CIF 24 
CIF C40 C25 C 0 1 Y N N N N N 7.634  -62.255 6.661  -10.179 0.599  0.056  C40 CIF 25 
CIF C41 C26 C 0 1 Y N N N N N 8.708  -61.745 6.000  -10.354 1.633  -0.868 C41 CIF 26 
CIF C42 C27 C 0 1 Y N N N N N 8.930  -62.127 4.706  -11.629 2.140  -1.053 C42 CIF 27 
CIF C43 C28 C 0 1 Y N N N N N 8.086  -63.004 4.088  -12.678 1.613  -0.323 C43 CIF 28 
CIF C45 C29 C 0 1 Y N N N N N 6.828  -63.119 5.973  -11.290 0.118  0.748  C45 CIF 29 
CIF C6  C30 C 0 1 N N N N N N -5.898 -63.847 0.002  6.798   2.931  -0.336 C6  CIF 30 
CIF C5  C31 C 0 1 N N N N N N -4.607 -63.676 -0.723 8.147   2.259  -0.615 C5  CIF 31 
CIF C4  C32 C 0 1 N N R N N N -3.808 -62.599 -0.051 8.074   0.786  -0.209 C4  CIF 32 
CIF C3  C33 C 0 1 N N N N N N -3.939 -62.547 1.463  7.839   0.672  1.303  C3  CIF 33 
CIF N2  N1  N 0 1 N N N N N N -2.597 -64.422 3.522  5.336   -0.861 1.203  N2  CIF 34 
CIF N25 N2  N 0 1 N N N N N N 0.528  -64.488 7.489  -0.479  -1.905 -0.320 N25 CIF 35 
CIF N32 N3  N 0 1 N N N N N N 4.800  -62.733 10.364 -5.493  0.455  -0.870 N32 CIF 36 
CIF N34 N4  N 0 1 Y N N N N N 6.549  -61.286 10.563 -6.380  -1.019 0.712  N34 CIF 37 
CIF N38 N5  N 0 1 Y N N N N N 6.245  -62.444 8.623  -7.776  0.474  -0.372 N38 CIF 38 
CIF N44 N6  N 0 1 Y N N N N N 7.052  -63.478 4.726  -12.483 0.637  0.543  N44 CIF 39 
CIF O2  O1  O 0 1 N N N N N N -3.215 -65.801 1.921  4.531   1.020  0.345  O2  CIF 40 
CIF O1  O2  O 0 1 N N N N N N -3.454 -60.307 -0.514 10.036  -0.415 0.299  O1  CIF 41 
CIF O   O3  O 0 1 N N N N N N -5.286 -61.199 -1.583 9.782   0.071  -1.842 O   CIF 42 
CIF O4  O4  O 0 1 N N N N N N -5.774 -65.642 1.478  6.123   3.624  1.828  O4  CIF 43 
CIF O24 O5  O 0 1 N N N N N N 0.996  -66.595 7.533  0.384   -0.046 0.536  O24 CIF 44 
CIF H1  H1  H 0 1 N N N N N N -1.728 -62.066 0.112  6.696   -0.848 -0.483 H1  CIF 45 
CIF H2  H2  H 0 1 N N N N N N -2.044 -63.831 0.009  6.039   0.749  -0.916 H2  CIF 46 
CIF H3  H3  H 0 1 N N N N N N -2.192 -62.805 -1.458 7.207   -0.055 -1.993 H3  CIF 47 
CIF H4  H4  H 0 1 N N N N N N -6.569 -60.050 -2.730 11.255  -0.557 -3.178 H4  CIF 48 
CIF H5  H5  H 0 1 N N N N N N -5.951 -59.271 -1.234 11.840  -0.115 -1.557 H5  CIF 49 
CIF H6  H6  H 0 1 N N N N N N -4.869 -59.477 -2.652 10.966  -1.646 -1.800 H6  CIF 50 
CIF H7  H7  H 0 1 N N N N N N -3.753 -66.715 3.878  5.434   -3.341 0.298  H7  CIF 51 
CIF H8  H8  H 0 1 N N N N N N -3.060 -68.367 5.528  3.537   -4.652 -0.556 H8  CIF 52 
CIF H9  H9  H 0 1 N N N N N N -1.197 -67.925 7.043  1.286   -3.666 -0.628 H9  CIF 53 
CIF H10 H10 H 0 1 N N N N N N -0.648 -64.205 5.146  2.836   -0.024 1.021  H10 CIF 54 
CIF H11 H11 H 0 1 N N N N N N 1.887  -62.454 6.976  -0.948  0.622  -0.938 H11 CIF 55 
CIF H12 H12 H 0 1 N N N N N N -4.991 -63.522 3.011  6.349   1.301  2.731  H12 CIF 56 
CIF H13 H13 H 0 1 N N N N N N 3.417  -64.784 10.918 -5.024  -2.071 -0.246 H13 CIF 57 
CIF H14 H14 H 0 1 N N N N N N 1.519  -65.658 9.660  -2.809  -3.113 -0.001 H14 CIF 58 
CIF H15 H15 H 0 1 N N N N N N 8.159  -59.993 10.655 -7.217  -2.316 2.119  H15 CIF 59 
CIF H16 H16 H 0 1 N N N N N N 8.882  -60.481 8.359  -9.500  -1.406 1.773  H16 CIF 60 
CIF H17 H17 H 0 1 N N N N N N 3.396  -60.406 8.433  -3.227  2.182  -2.371 H17 CIF 61 
CIF H18 H18 H 0 1 N N N N N N 4.962  -61.253 8.198  -4.106  2.490  -0.854 H18 CIF 62 
CIF H19 H19 H 0 1 N N N N N N 3.734  -61.257 6.888  -2.331  2.615  -0.895 H19 CIF 63 
CIF H20 H20 H 0 1 N N N N N N 9.374  -61.050 6.489  -9.516  2.026  -1.424 H20 CIF 64 
CIF H21 H21 H 0 1 N N N N N N 9.780  -61.732 4.169  -11.801 2.939  -1.758 H21 CIF 65 
CIF H22 H22 H 0 1 N N N N N N 8.275  -63.306 3.068  -13.674 2.007  -0.464 H22 CIF 66 
CIF H23 H23 H 0 1 N N N N N N 5.965  -63.527 6.477  -11.170 -0.683 1.462  H23 CIF 67 
CIF H24 H24 H 0 1 N N N N N N -6.374 -62.882 0.230  6.032   2.495  -0.978 H24 CIF 68 
CIF H25 H25 H 0 1 N N N N N N -6.603 -64.481 -0.556 6.872   4.001  -0.530 H25 CIF 69 
CIF H26 H26 H 0 1 N N N N N N -4.805 -63.391 -1.767 8.376   2.332  -1.678 H26 CIF 70 
CIF H27 H27 H 0 1 N N N N N N -4.044 -64.621 -0.701 8.927   2.756  -0.039 H27 CIF 71 
CIF H28 H28 H 0 1 N N N N N N -2.947 -62.324 1.884  8.627   1.207  1.834  H28 CIF 72 
CIF H29 H29 H 0 1 N N N N N N -4.636 -61.735 1.717  7.853   -0.379 1.594  H29 CIF 73 
CIF H30 H30 H 0 1 N N N N N N -2.275 -63.480 3.620  6.055   -1.308 1.676  H30 CIF 74 
CIF H31 H31 H 0 1 N N N N N N -0.128 -63.786 7.211  -0.353  -2.835 -0.564 H31 CIF 75 
CIF H32 H32 H 0 1 N N N N N N 4.773  -62.879 11.353 -5.609  1.214  -1.462 H32 CIF 76 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
CIF C15 O   SING N N 1  
CIF O   C14 SING N N 2  
CIF C5  C4  SING N N 3  
CIF C5  C6  SING N N 4  
CIF C14 O1  DOUB N N 5  
CIF C14 C4  SING N N 6  
CIF C7  C4  SING N N 7  
CIF C4  C3  SING N N 8  
CIF C6  C1  SING N N 9  
CIF C1  O4  DOUB N N 10 
CIF C1  C2  SING N N 11 
CIF C3  C2  SING N N 12 
CIF O2  C16 DOUB N N 13 
CIF C2  C16 SING N N 14 
CIF C16 N2  SING N N 15 
CIF N2  C17 SING N N 16 
CIF C43 C42 DOUB Y N 17 
CIF C43 N44 SING Y N 18 
CIF C17 C18 DOUB Y N 19 
CIF C17 C22 SING Y N 20 
CIF C18 C19 SING Y N 21 
CIF C42 C41 SING Y N 22 
CIF N44 C45 DOUB Y N 23 
CIF C22 C21 DOUB Y N 24 
CIF C19 C20 DOUB Y N 25 
CIF C45 C40 SING Y N 26 
CIF C41 C40 DOUB Y N 27 
CIF C21 C20 SING Y N 28 
CIF C21 C23 SING N N 29 
CIF C40 C37 SING N N 30 
CIF C23 N25 SING N N 31 
CIF C23 O24 DOUB N N 32 
CIF N25 C26 SING N N 33 
CIF C27 C26 DOUB Y N 34 
CIF C27 C28 SING Y N 35 
CIF C39 C28 SING N N 36 
CIF C37 N38 DOUB Y N 37 
CIF C37 C36 SING Y N 38 
CIF C26 C31 SING Y N 39 
CIF C28 C29 DOUB Y N 40 
CIF N38 C33 SING Y N 41 
CIF C36 C35 DOUB Y N 42 
CIF C31 C30 DOUB Y N 43 
CIF C29 C30 SING Y N 44 
CIF C29 N32 SING N N 45 
CIF C33 N32 SING N N 46 
CIF C33 N34 DOUB Y N 47 
CIF C35 N34 SING Y N 48 
CIF C7  H1  SING N N 49 
CIF C7  H2  SING N N 50 
CIF C7  H3  SING N N 51 
CIF C15 H4  SING N N 52 
CIF C15 H5  SING N N 53 
CIF C15 H6  SING N N 54 
CIF C18 H7  SING N N 55 
CIF C19 H8  SING N N 56 
CIF C20 H9  SING N N 57 
CIF C22 H10 SING N N 58 
CIF C27 H11 SING N N 59 
CIF C2  H12 SING N N 60 
CIF C30 H13 SING N N 61 
CIF C31 H14 SING N N 62 
CIF C35 H15 SING N N 63 
CIF C36 H16 SING N N 64 
CIF C39 H17 SING N N 65 
CIF C39 H18 SING N N 66 
CIF C39 H19 SING N N 67 
CIF C41 H20 SING N N 68 
CIF C42 H21 SING N N 69 
CIF C43 H22 SING N N 70 
CIF C45 H23 SING N N 71 
CIF C6  H24 SING N N 72 
CIF C6  H25 SING N N 73 
CIF C5  H26 SING N N 74 
CIF C5  H27 SING N N 75 
CIF C3  H28 SING N N 76 
CIF C3  H29 SING N N 77 
CIF N2  H30 SING N N 78 
CIF N25 H31 SING N N 79 
CIF N32 H32 SING N N 80 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
CIF InChI            InChI                1.06  "InChI=1S/C33H32N6O5/c1-20-16-24(9-10-26(20)38-32-35-15-12-27(39-32)22-7-5-14-34-19-22)36-29(41)21-6-4-8-23(17-21)37-30(42)25-18-33(2,31(43)44-3)13-11-28(25)40/h4-10,12,14-17,19,25H,11,13,18H2,1-3H3,(H,36,41)(H,37,42)(H,35,38,39)/t25-,33+/m0/s1" 
CIF InChIKey         InChI                1.06  LOKFZRXMKAWKTK-OGVWKLGRSA-N                                                                                                                                                                                                                           
CIF SMILES_CANONICAL CACTVS               3.385 "COC(=O)[C@]1(C)CCC(=O)[C@H](C1)C(=O)Nc2cccc(c2)C(=O)Nc3ccc(Nc4nccc(n4)c5cccnc5)c(C)c3"                                                                                                                                                               
CIF SMILES           CACTVS               3.385 "COC(=O)[C]1(C)CCC(=O)[CH](C1)C(=O)Nc2cccc(c2)C(=O)Nc3ccc(Nc4nccc(n4)c5cccnc5)c(C)c3"                                                                                                                                                                 
CIF SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1cc(ccc1Nc2nccc(n2)c3cccnc3)NC(=O)c4cccc(c4)NC(=O)[C@H]5C[C@](CCC5=O)(C)C(=O)OC"                                                                                                                                                                   
CIF SMILES           "OpenEye OEToolkits" 2.0.7 "Cc1cc(ccc1Nc2nccc(n2)c3cccnc3)NC(=O)c4cccc(c4)NC(=O)C5CC(CCC5=O)(C)C(=O)OC"                                                                                                                                                                          
# 
_pdbx_chem_comp_identifier.comp_id           CIF 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "methyl (1~{R},3~{S})-1-methyl-3-[[3-[[3-methyl-4-[(4-pyridin-3-ylpyrimidin-2-yl)amino]phenyl]carbamoyl]phenyl]carbamoyl]-4-oxidanylidene-cyclohexane-1-carboxylate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
CIF "Create component"         2023-07-17 PDBE 
CIF "Modify leaving atom flag" 2023-08-07 PDBE 
CIF "Initial release"          2024-07-24 RCSB 
CIF "Modify PCM"               2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            CIF 
_pdbx_chem_comp_pcm.modified_residue_id                CYS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C3 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   SG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
