data_DAF
#

_chem_comp.id                                   DAF
_chem_comp.name                                 "4,6-dideoxy-4-{[(1S,5R,6S)-3-formyl-5,6-dihydroxy-4-oxocyclohex-2-en-1-yl]amino}-alpha-D-xylo-hex-5-enopyranose"
_chem_comp.type                                 "D-saccharide, alpha linking"
_chem_comp.pdbx_type                            ATOMS
_chem_comp.formula                              "C13 H17 N O8"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        
;4,6-dideoxy-4-{[(1S,5R,6S)-3-formyl-5,6-dihydroxy-4-oxocyclohex-2-en-1-yl]amino}-alpha-D-xylo-hex-5-enose;
4,6-dideoxy-4-{[(1S,5R,6S)-3-formyl-5,6-dihydroxy-4-oxocyclohex-2-en-1-yl]amino}-D-xylo-hex-5-enose;
4,6-dideoxy-4-{[(1S,5R,6S)-3-formyl-5,6-dihydroxy-4-oxocyclohex-2-en-1-yl]amino}-xylo-hex-5-enose
;

_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    1999-07-08
_chem_comp.pdbx_modified_date                   2020-07-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       315.276
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    DAF
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       1BG9
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_pdbx_chem_comp_synonyms.ordinal
_pdbx_chem_comp_synonyms.comp_id
_pdbx_chem_comp_synonyms.name
_pdbx_chem_comp_synonyms.provenance
_pdbx_chem_comp_synonyms.type
1  DAF  "4,6-dideoxy-4-{[(1S,5R,6S)-3-formyl-5,6-dihydroxy-4-oxocyclohex-2-en-1-yl]amino}-alpha-D-xylo-hex-5-enose"  PDB  ?  
2  DAF  "4,6-dideoxy-4-{[(1S,5R,6S)-3-formyl-5,6-dihydroxy-4-oxocyclohex-2-en-1-yl]amino}-D-xylo-hex-5-enose"        PDB  ?  
3  DAF  "4,6-dideoxy-4-{[(1S,5R,6S)-3-formyl-5,6-dihydroxy-4-oxocyclohex-2-en-1-yl]amino}-xylo-hex-5-enose"          PDB  ?  
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
DAF  C1    C1    C  0  1  N  N  S  6.194  67.673  36.749   3.701  -0.894   0.360  C1    DAF   1  
DAF  O1    O1    O  0  1  N  Y  N  7.247  66.714  36.916   4.209  -1.583   1.504  O1    DAF   2  
DAF  C2    C2    C  0  1  N  N  R  4.853  67.029  36.438   3.479   0.580   0.708  C2    DAF   3  
DAF  O2    O2    O  0  1  N  N  N  4.560  65.927  37.292   2.564   0.679   1.802  O2    DAF   4  
DAF  C3    C3    C  0  1  N  N  S  4.835  66.551  34.975   2.901   1.309  -0.509  C3    DAF   5  
DAF  O3    O3    O  0  1  N  N  N  3.626  65.818  34.766   3.815   1.211  -1.603  O3    DAF   6  
DAF  C4    C4    C  0  1  N  N  S  4.942  67.805  34.072   1.566   0.658  -0.891  C4    DAF   7  
DAF  N4    N4    N  0  1  N  N  N  4.864  67.448  32.674   0.572   0.911   0.161  N4    DAF   8  
DAF  C5    C5    C  0  1  N  N  N  6.282  68.558  34.415   1.789  -0.832  -1.034  C5    DAF   9  
DAF  O5    O5    O  0  1  N  N  N  6.601  68.706  35.813   2.455  -1.480  -0.036  O5    DAF  10  
DAF  C6    C6    C  0  1  N  N  N  7.010  69.527  33.501   1.352  -1.485  -2.092  C6    DAF  11  
DAF  C1H   C1H   C  0  1  N  N  S  3.751  67.944  31.881  -0.793   0.852  -0.379  C1H   DAF  12  
DAF  C2H   C2H   C  0  1  N  N  S  4.016  68.307  30.433  -1.708   1.725   0.477  C2H   DAF  13  
DAF  O2H   O2H   O  0  1  N  N  N  4.778  67.357  29.685  -1.594   1.336   1.847  O2H   DAF  14  
DAF  C3H   C3H   C  0  1  N  N  R  4.670  69.690  30.524  -3.159   1.543   0.011  C3H   DAF  15  
DAF  O3H   O3H   O  0  1  N  N  N  5.022  70.185  29.233  -3.266   1.858  -1.379  O3H   DAF  16  
DAF  C4H   C4H   C  0  1  N  N  N  3.716  70.701  31.253  -3.528   0.091   0.239  C4H   DAF  17  
DAF  O4H   O4H   O  0  1  N  N  N  3.927  72.104  31.112  -4.610  -0.217   0.692  O4H   DAF  18  
DAF  C5H   C5H   C  0  1  N  N  N  2.609  70.128  32.152  -2.525  -0.933  -0.109  C5H   DAF  19  
DAF  C6H   C6H   C  0  1  N  N  N  2.675  68.767  32.443  -1.256  -0.574  -0.389  C6H   DAF  20  
DAF  C7H   C7H   C  0  1  N  N  N  1.485  71.028  32.713  -2.912  -2.352  -0.152  C7H   DAF  21  
DAF  O7H   O7H   O  0  1  N  N  N  0.160  70.737  32.264  -4.052  -2.677   0.099  O7H   DAF  22  
DAF  H1    H1    H  0  1  N  N  N  6.065  68.170  37.722   4.416  -0.971  -0.459  H1    DAF  23  
DAF  HO1   HO1   H  0  1  N  N  N  6.971  66.043  37.530   4.373  -2.525   1.356  HO1   DAF  24  
DAF  H2    H2    H  0  1  N  N  N  4.072  67.795  36.552   4.430   1.035   0.987  H2    DAF  25  
DAF  HO2   HO2   H  0  1  N  N  N  3.715  65.561  37.058   2.865   0.238   2.608  HO2   DAF  26  
DAF  H3    H3    H  0  1  N  N  N  5.710  65.909  34.797   2.738   2.358  -0.262  H3    DAF  27  
DAF  HO3   HO3   H  0  1  N  N  N  3.592  65.512  33.867   4.683   1.597  -1.426  HO3   DAF  28  
DAF  H4    H4    H  0  1  N  N  N  4.108  68.477  34.323   1.214   1.069  -1.837  H4    DAF  29  
DAF  HN4   HN4   H  0  1  N  N  N  5.703  67.777  32.240   0.686   0.266   0.928  HN4   DAF  30  
DAF  H6    H6    H  0  1  N  N  N  7.699  70.247  33.917   0.826  -0.956  -2.873  H6    DAF  31  
DAF  H6A   H6A   H  0  1  N  N  N  6.839  69.496  32.435   1.520  -2.548  -2.177  H6A   DAF  32  
DAF  H1H   H1H   H  0  1  N  N  N  3.201  67.004  31.729  -0.789   1.234  -1.400  H1H   DAF  33  
DAF  H2H   H2H   H  0  1  N  N  N  3.041  68.439  29.942  -1.420   2.771   0.370  H2H   DAF  34  
DAF  HO2H  HO2H  H  0  0  N  N  N  4.891  67.671  28.795  -2.150   1.849   2.450  HO2H  DAF  35  
DAF  H3H   H3H   H  0  1  N  N  N  5.579  69.594  31.136  -3.819   2.189   0.590  H3H   DAF  36  
DAF  HO3H  HO3H  H  0  0  N  N  N  4.833  71.115  29.188  -4.160   1.763  -1.736  HO3H  DAF  37  
DAF  H6H   H6H   H  0  1  N  N  N  1.932  68.317  33.084  -0.542  -1.348  -0.630  H6H   DAF  38  
DAF  H7H   H7H   H  0  1  N  N  N  1.689  71.831  33.405  -2.179  -3.103  -0.407  H7H   DAF  39  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
DAF  O5   C1    SING  N  N   1  
DAF  C2   C1    SING  N  N   2  
DAF  C1   O1    SING  N  N   3  
DAF  C1   H1    SING  N  N   4  
DAF  O1   HO1   SING  N  N   5  
DAF  C3   C2    SING  N  N   6  
DAF  C2   O2    SING  N  N   7  
DAF  C2   H2    SING  N  N   8  
DAF  O2   HO2   SING  N  N   9  
DAF  C4   C3    SING  N  N  10  
DAF  O3   C3    SING  N  N  11  
DAF  C3   H3    SING  N  N  12  
DAF  O3   HO3   SING  N  N  13  
DAF  N4   C4    SING  N  N  14  
DAF  C4   C5    SING  N  N  15  
DAF  C4   H4    SING  N  N  16  
DAF  C1H  N4    SING  N  N  17  
DAF  N4   HN4   SING  N  N  18  
DAF  C6   C5    DOUB  N  N  19  
DAF  C5   O5    SING  N  N  20  
DAF  C6   H6    SING  N  N  21  
DAF  C6   H6A   SING  N  N  22  
DAF  C2H  C1H   SING  N  N  23  
DAF  C1H  C6H   SING  N  N  24  
DAF  C1H  H1H   SING  N  N  25  
DAF  O2H  C2H   SING  N  N  26  
DAF  C2H  C3H   SING  N  N  27  
DAF  C2H  H2H   SING  N  N  28  
DAF  O2H  HO2H  SING  N  N  29  
DAF  O3H  C3H   SING  N  N  30  
DAF  C3H  C4H   SING  N  N  31  
DAF  C3H  H3H   SING  N  N  32  
DAF  O3H  HO3H  SING  N  N  33  
DAF  O4H  C4H   DOUB  N  N  34  
DAF  C4H  C5H   SING  N  N  35  
DAF  C5H  C6H   DOUB  N  N  36  
DAF  C5H  C7H   SING  N  N  37  
DAF  C6H  H6H   SING  N  N  38  
DAF  O7H  C7H   DOUB  N  N  39  
DAF  C7H  H7H   SING  N  N  40  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
DAF  SMILES            ACDLabs               12.01  "O=CC2=CC(NC1C(/OC(O)C(O)C1O)=C)C(O)C(O)C2=O"  
DAF  InChI             InChI                 1.03   "InChI=1S/C13H17NO8/c1-4-7(10(18)12(20)13(21)22-4)14-6-2-5(3-15)8(16)11(19)9(6)17/h2-3,6-7,9-14,17-21H,1H2/t6-,7+,9-,10-,11-,12+,13-/m0/s1"  
DAF  InChIKey          InChI                 1.03   ZGWNRGISVMYHTF-KKXLKBQTSA-N  
DAF  SMILES_CANONICAL  CACTVS                3.370  "O[C@H]1OC(=C)[C@@H](N[C@H]2C=C(C=O)C(=O)[C@H](O)[C@H]2O)[C@H](O)[C@H]1O"  
DAF  SMILES            CACTVS                3.370  "O[CH]1OC(=C)[CH](N[CH]2C=C(C=O)C(=O)[CH](O)[CH]2O)[CH](O)[CH]1O"  
DAF  SMILES_CANONICAL  "OpenEye OEToolkits"  1.7.6  "C=C1[C@H]([C@@H]([C@H]([C@H](O1)O)O)O)N[C@H]2C=C(C(=O)[C@@H]([C@H]2O)O)C=O"  
DAF  SMILES            "OpenEye OEToolkits"  1.7.6  "C=C1C(C(C(C(O1)O)O)O)NC2C=C(C(=O)C(C2O)O)C=O"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
DAF  "SYSTEMATIC NAME"  ACDLabs               12.01  "4,6-dideoxy-4-{[(1S,5R,6S)-3-formyl-5,6-dihydroxy-4-oxocyclohex-2-en-1-yl]amino}-alpha-D-xylo-hex-5-enopyranose"  
DAF  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.7.6  
;(3S,4S,5R)-3-[[(3S,4S,5R,6S)-2-methylidene-4,5,6-tris(oxidanyl)oxan-3-yl]amino]-4,5-bis(oxidanyl)-6-oxidanylidene-cyclo
hexene-1-carbaldehyde
;
  
#   #
loop_
_pdbx_chem_comp_feature.comp_id
_pdbx_chem_comp_feature.type
_pdbx_chem_comp_feature.value
_pdbx_chem_comp_feature.source
_pdbx_chem_comp_feature.support
DAF  "CARBOHYDRATE ISOMER"                  D         PDB  ?  
DAF  "CARBOHYDRATE RING"                    pyranose  PDB  ?  
DAF  "CARBOHYDRATE ANOMER"                  alpha     PDB  ?  
DAF  "CARBOHYDRATE PRIMARY CARBONYL GROUP"  aldose    PDB  ?  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
DAF  "Create component"          1999-07-08  RCSB  
DAF  "Modify descriptor"         2011-06-04  RCSB  
DAF  "Other modification"        2012-12-22  RCSB  
DAF  "Modify leaving atom flag"  2019-09-17  PDBE  
DAF  "Other modification"        2020-07-03  RCSB  
DAF  "Modify synonyms"           2020-07-17  RCSB  
DAF  "Modify linking type"       2020-07-17  RCSB  
##
