data_GGF
#

_chem_comp.id                                   GGF
_chem_comp.name                                 "2-azanyl-9-[(1~{R},6~{R},8~{R},9~{R},10~{R},15~{R},17~{R},18~{R})-17-(2-azanyl-6-oxidanylidene-1~{H}-purin-9-yl)-9,18-bis(fluoranyl)-3,12-bis(oxidanyl)-3,12-bis(oxidanylidene)-2,4,7,11,13,16-hexaoxa-3$l^{5},12$l^{5}-diphosphatricyclo[13.3.0.0^{6,10}]octadecan-8-yl]-1~{H}-purin-6-one"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C20 H22 F2 N10 O12 P2"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2020-03-20
_chem_comp.pdbx_modified_date                   2021-03-26
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       694.393
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    GGF
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       6YDB
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 PDBE
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
GGF  "C1'"   C1   C  0  1  N  N  R  -23.100  17.787  -10.373   4.729  -0.595   0.389  "C1'"   GGF   1  
GGF  C1A     C2   C  0  1  N  N  R  -17.783  23.119   -7.496  -4.855  -0.701   0.559  C1A     GGF   2  
GGF  C2      C3   C  0  1  N  N  N  -21.589  13.599   -9.807   8.617   1.617   0.181  C2      GGF   3  
GGF  "C2'"   C4   C  0  1  N  N  R  -23.291  18.182   -8.919   3.810   0.524   0.903  "C2'"   GGF   4  
GGF  C21     C5   C  0  1  N  N  N  -13.595  21.600   -8.058  -8.288   0.953  -1.794  C21     GGF   5  
GGF  C2A     C6   C  0  1  N  N  R  -18.186  23.295   -8.951  -3.907  -1.061  -0.596  C2A     GGF   6  
GGF  "C3'"   C7   C  0  1  N  N  R  -22.847  19.631   -8.920   2.383  -0.043   0.760  "C3'"   GGF   7  
GGF  C3A     C8   C  0  1  N  N  R  -19.638  22.862   -8.940  -2.600  -1.509   0.087  C3A     GGF   8  
GGF  C4      C9   C  0  1  Y  N  N  -21.467  15.906  -10.267   6.725   0.573  -0.633  C4      GGF   9  
GGF  "C4'"   C10  C  0  1  N  N  R  -23.418  20.105  -10.249   2.585  -1.532   0.431  "C4'"   GGF  10  
GGF  C41     C11  C  0  1  Y  N  N  -15.903  21.484   -7.598  -6.450   1.013  -0.396  C41     GGF  11  
GGF  C4A     C12  C  0  1  N  N  R  -20.106  23.435   -7.611  -2.931  -1.540   1.589  C4A     GGF  12  
GGF  C5      C13  C  0  1  Y  N  N  -20.019  15.768  -10.461   7.124   0.844  -1.947  C5      GGF  13  
GGF  "C5'"   C14  C  0  1  N  N  N  -22.757  21.370  -10.761   1.583  -1.967  -0.640  "C5'"   GGF  14  
GGF  C51     C15  C  0  1  Y  N  N  -15.768  20.037   -7.399  -6.567   2.402  -0.279  C51     GGF  15  
GGF  C5A     C16  C  0  1  N  N  N  -21.365  22.771   -7.088  -1.781  -0.935   2.393  C5A     GGF  16  
GGF  C6      C17  C  0  1  N  N  N  -19.440  14.418  -10.290   8.335   1.543  -2.156  C6      GGF  17  
GGF  C61     C18  C  0  1  N  N  N  -14.418  19.455   -7.568  -7.612   3.055  -0.974  C61     GGF  18  
GGF  C8      C19  C  0  1  Y  N  N  -20.613  17.846  -10.768   5.242  -0.226  -2.055  C8      GGF  19  
GGF  C81     C20  C  0  1  Y  N  N  -17.845  20.634   -7.093  -4.865   1.798   0.919  C81     GGF  20  
GGF  F1      F1   F  0  1  N  N  N  -18.069  24.598   -9.334  -4.441  -2.107  -1.357  F1      GGF  21  
GGF  F2      F2   F  0  1  N  N  N  -24.602  18.088   -8.558   4.090   0.807   2.244  F2      GGF  22  
GGF  N1      N1   N  0  1  N  N  N  -20.265  13.414   -9.973   9.056   1.915  -1.075  N1      GGF  23  
GGF  N11     N2   N  0  1  N  N  N  -13.413  20.277   -7.888  -8.453   2.304  -1.719  N11     GGF  24  
GGF  N2      N3   N  0  1  N  N  N  -22.357  12.530   -9.487   9.370   2.008   1.260  N2      GGF  25  
GGF  N21     N4   N  0  1  N  N  N  -12.524  22.365   -8.382  -9.153   0.218  -2.564  N21     GGF  26  
GGF  N3      N5   N  0  1  N  N  N  -22.188  14.808   -9.947   7.491   0.972   0.388  N3      GGF  27  
GGF  N31     N6   N  0  1  N  N  N  -14.803  22.202   -7.920  -7.321   0.336  -1.153  N31     GGF  28  
GGF  N7      N7   N  0  1  Y  N  N  -19.557  16.992  -10.766   6.175   0.333  -2.769  N7      GGF  29  
GGF  N71     N8   N  0  1  Y  N  N  -16.992  19.577   -7.092  -5.570   2.823   0.537  N71     GGF  30  
GGF  N9      N9   N  0  1  Y  N  N  -21.752  17.190  -10.481   5.535  -0.097  -0.729  N9      GGF  31  
GGF  N91     N10  N  0  1  Y  N  N  -17.187  21.771   -7.384  -5.372   0.657   0.368  N91     GGF  32  
GGF  O11     O1   O  0  1  N  N  N  -23.108  20.975   -5.330  -0.105   1.199   3.594  O11     GGF  33  
GGF  O1P     O2   O  0  1  N  N  N  -20.977  23.117  -12.533  -0.537  -4.346   0.723  O1P     GGF  34  
GGF  O21     O3   O  0  1  N  N  N  -21.784  19.052   -6.205   0.215   2.033   1.233  O21     GGF  35  
GGF  O2P     O4   O  0  1  N  N  N  -19.041  21.805  -11.662  -0.331  -3.985  -1.767  O2P     GGF  36  
GGF  "O3'"   O5   O  0  1  N  N  N  -23.319  20.335   -7.788   1.660   0.105   1.983  "O3'"   GGF  37  
GGF  O3A     O6   O  0  1  N  N  N  -20.337  23.330  -10.078  -2.221  -2.810  -0.364  O3A     GGF  38  
GGF  "O4'"   O7   O  0  1  N  N  N  -23.225  18.995  -11.137   3.921  -1.686  -0.056  "O4'"   GGF  39  
GGF  O4A     O8   O  0  1  N  N  N  -18.991  23.236   -6.731  -4.121  -0.770   1.782  O4A     GGF  40  
GGF  "O5'"   O9   O  0  1  N  N  N  -21.381  21.120  -11.011   0.285  -2.089  -0.053  "O5'"   GGF  41  
GGF  O5A     O10  O  0  1  N  N  N  -21.114  21.393   -6.854  -0.911  -0.208   1.524  O5A     GGF  42  
GGF  O6      O11  O  0  1  N  N  N  -18.216  14.217  -10.436   8.722   1.800  -3.283  O6      GGF  43  
GGF  O61     O12  O  0  1  N  N  N  -14.221  18.231   -7.418  -7.752   4.264  -0.900  O61     GGF  44  
GGF  P1      P1   P  0  1  N  N  N  -20.415  22.353  -11.357  -0.697  -3.331  -0.342  P1      GGF  45  
GGF  P11     P2   P  0  1  N  N  N  -22.343  20.422   -6.509   0.215   0.809   2.065  P11     GGF  46  
GGF  "H1'"   H1   H  0  1  N  N  N  -23.868  17.055  -10.664   5.385  -0.929   1.193  "H1'"   GGF  47  
GGF  H1A     H2   H  0  1  N  N  N  -17.053  23.891   -7.211  -5.683  -1.409   0.586  H1A     GGF  48  
GGF  "H2'"   H3   H  0  1  N  N  N  -22.631  17.583   -8.274   3.926   1.420   0.294  "H2'"   GGF  49  
GGF  H2A     H4   H  0  1  N  N  N  -17.597  22.618   -9.587  -3.726  -0.189  -1.224  H2A     GGF  50  
GGF  "H3'"   H5   H  0  1  N  N  N  -21.749  19.670   -8.968   1.860   0.458  -0.054  "H3'"   GGF  51  
GGF  H3A     H6   H  0  1  N  N  N  -19.683  21.764   -8.889  -1.805  -0.792  -0.111  H3A     GGF  52  
GGF  "H4'"   H7   H  0  1  N  N  N  -24.494  20.297  -10.121   2.450  -2.131   1.331  "H4'"   GGF  53  
GGF  H4A     H8   H  0  1  N  N  N  -20.298  24.511   -7.737  -3.105  -2.569   1.906  H4A     GGF  54  
GGF  "H5'1"  H9   H  0  0  N  N  N  -22.854  22.165  -10.007   1.553  -1.222  -1.434  "H5'1"  GGF  55  
GGF  "H5'2"  H10  H  0  0  N  N  N  -23.247  21.688  -11.693   1.887  -2.928  -1.054  "H5'2"  GGF  56  
GGF  H5A1    H11  H  0  0  N  N  N  -21.669  23.253   -6.147  -2.184  -0.261   3.149  H5A1    GGF  57  
GGF  H5A2    H12  H  0  0  N  N  N  -22.170  22.876   -7.831  -1.222  -1.733   2.881  H5A2    GGF  58  
GGF  H8      H13  H  0  1  N  N  N  -20.548  18.905  -10.972   4.363  -0.712  -2.453  H8      GGF  59  
GGF  H81     H14  H  0  1  N  N  N  -18.904  20.571   -6.889  -4.008   1.844   1.574  H81     GGF  60  
GGF  HN1     H15  H  0  1  N  N  N  -19.887  12.496   -9.855   9.890   2.396  -1.193  HN1     GGF  61  
GGF  HN11    H16  H  0  0  N  N  N  -12.496  19.896   -8.005  -9.178   2.729  -2.205  HN11    GGF  62  
GGF  HN22    H17  H  0  0  N  N  N  -23.342  12.643   -9.359  10.201   2.488   1.123  HN22    GGF  63  
GGF  HN21    H18  H  0  0  N  N  N  -21.939  11.628   -9.378   9.070   1.803   2.160  HN21    GGF  64  
GGF  H212    H19  H  0  0  N  N  N  -12.635  23.350   -8.514  -9.046  -0.744  -2.630  H212    GGF  65  
GGF  H211    H20  H  0  0  N  N  N  -11.623  21.944   -8.489  -9.872   0.659  -3.043  H211    GGF  66  
GGF  H1      H21  H  0  1  N  N  N  -23.089  20.347   -4.617  -0.962   1.629   3.719  H1      GGF  67  
GGF  H2      H22  H  0  1  N  N  N  -18.791  22.049  -12.545   0.575  -4.319  -1.826  H2      GGF  68  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
GGF  O1P    P1      DOUB  N  N   1  
GGF  O2P    P1      SING  N  N   2  
GGF  P1     "O5'"   SING  N  N   3  
GGF  P1     O3A     SING  N  N   4  
GGF  "O4'"  "C1'"   SING  N  N   5  
GGF  "O4'"  "C4'"   SING  N  N   6  
GGF  "O5'"  "C5'"   SING  N  N   7  
GGF  C8     N7      DOUB  Y  N   8  
GGF  C8     N9      SING  Y  N   9  
GGF  N7     C5      SING  Y  N  10  
GGF  "C5'"  "C4'"   SING  N  N  11  
GGF  N9     "C1'"   SING  N  N  12  
GGF  N9     C4      SING  Y  N  13  
GGF  C5     C6      SING  N  N  14  
GGF  C5     C4      DOUB  Y  N  15  
GGF  O6     C6      DOUB  N  N  16  
GGF  "C1'"  "C2'"   SING  N  N  17  
GGF  C6     N1      SING  N  N  18  
GGF  C4     N3      SING  N  N  19  
GGF  "C4'"  "C3'"   SING  N  N  20  
GGF  O3A    C3A     SING  N  N  21  
GGF  N1     C2      SING  N  N  22  
GGF  N3     C2      DOUB  N  N  23  
GGF  C2     N2      SING  N  N  24  
GGF  F1     C2A     SING  N  N  25  
GGF  C2A    C3A     SING  N  N  26  
GGF  C2A    C1A     SING  N  N  27  
GGF  C3A    C4A     SING  N  N  28  
GGF  "C3'"  "C2'"   SING  N  N  29  
GGF  "C3'"  "O3'"   SING  N  N  30  
GGF  "C2'"  F2      SING  N  N  31  
GGF  N21    C21     SING  N  N  32  
GGF  C21    N31     DOUB  N  N  33  
GGF  C21    N11     SING  N  N  34  
GGF  N31    C41     SING  N  N  35  
GGF  N11    C61     SING  N  N  36  
GGF  "O3'"  P11     SING  N  N  37  
GGF  C4A    C5A     SING  N  N  38  
GGF  C4A    O4A     SING  N  N  39  
GGF  C41    C51     DOUB  Y  N  40  
GGF  C41    N91     SING  Y  N  41  
GGF  C61    O61     DOUB  N  N  42  
GGF  C61    C51     SING  N  N  43  
GGF  C1A    N91     SING  N  N  44  
GGF  C1A    O4A     SING  N  N  45  
GGF  C51    N71     SING  Y  N  46  
GGF  N91    C81     SING  Y  N  47  
GGF  C81    N71     DOUB  Y  N  48  
GGF  C5A    O5A     SING  N  N  49  
GGF  O5A    P11     SING  N  N  50  
GGF  P11    O21     DOUB  N  N  51  
GGF  P11    O11     SING  N  N  52  
GGF  "C1'"  "H1'"   SING  N  N  53  
GGF  C1A    H1A     SING  N  N  54  
GGF  "C2'"  "H2'"   SING  N  N  55  
GGF  C2A    H2A     SING  N  N  56  
GGF  "C3'"  "H3'"   SING  N  N  57  
GGF  C3A    H3A     SING  N  N  58  
GGF  "C4'"  "H4'"   SING  N  N  59  
GGF  C4A    H4A     SING  N  N  60  
GGF  "C5'"  "H5'1"  SING  N  N  61  
GGF  "C5'"  "H5'2"  SING  N  N  62  
GGF  C5A    H5A1    SING  N  N  63  
GGF  C5A    H5A2    SING  N  N  64  
GGF  C8     H8      SING  N  N  65  
GGF  C81    H81     SING  N  N  66  
GGF  N1     HN1     SING  N  N  67  
GGF  N11    HN11    SING  N  N  68  
GGF  N2     HN22    SING  N  N  69  
GGF  N2     HN21    SING  N  N  70  
GGF  N21    H212    SING  N  N  71  
GGF  N21    H211    SING  N  N  72  
GGF  O11    H1      SING  N  N  73  
GGF  O2P    H2      SING  N  N  74  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
GGF  InChI             InChI                 1.03   "InChI=1S/C20H22F2N10O12P2/c21-7-11-5(41-17(7)31-3-25-9-13(31)27-19(23)29-15(9)33)1-39-45(35,36)44-12-6(2-40-46(37,38)43-11)42-18(8(12)22)32-4-26-10-14(32)28-20(24)30-16(10)34/h3-8,11-12,17-18H,1-2H2,(H,35,36)(H,37,38)(H3,23,27,29,33)(H3,24,28,30,34)/t5-,6-,7-,8-,11-,12-,17-,18-/m1/s1"  
GGF  InChIKey          InChI                 1.03   RKBIDRCIXOIYKC-MJIGAOGXSA-N  
GGF  SMILES_CANONICAL  CACTVS                3.385  "NC1=Nc2n(cnc2C(=O)N1)[C@@H]3O[C@@H]4CO[P](O)(=O)O[C@H]5[C@@H](F)[C@@H](O[C@@H]5CO[P](O)(=O)O[C@H]4[C@H]3F)n6cnc7C(=O)NC(=Nc67)N"  
GGF  SMILES            CACTVS                3.385  "NC1=Nc2n(cnc2C(=O)N1)[CH]3O[CH]4CO[P](O)(=O)O[CH]5[CH](F)[CH](O[CH]5CO[P](O)(=O)O[CH]4[CH]3F)n6cnc7C(=O)NC(=Nc67)N"  
GGF  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "c1nc2c(n1[C@H]3[C@@H]([C@H]4[C@H](O3)COP(=O)(O[C@@H]5[C@@H](COP(=O)(O4)O)O[C@H]([C@@H]5F)n6cnc7c6N=C(NC7=O)N)O)F)N=C(NC2=O)N"  
GGF  SMILES            "OpenEye OEToolkits"  2.0.7  "c1nc2c(n1C3C(C4C(O3)COP(=O)(OC5C(COP(=O)(O4)O)OC(C5F)n6cnc7c6N=C(NC7=O)N)O)F)N=C(NC2=O)N"  
#
_pdbx_chem_comp_identifier.comp_id          GGF
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.7
_pdbx_chem_comp_identifier.identifier       "2-azanyl-9-[(1~{R},6~{R},8~{R},9~{R},10~{R},15~{R},17~{R},18~{R})-17-(2-azanyl-6-oxidanylidene-1~{H}-purin-9-yl)-9,18-bis(fluoranyl)-3,12-bis(oxidanyl)-3,12-bis(oxidanylidene)-2,4,7,11,13,16-hexaoxa-3$l^{5},12$l^{5}-diphosphatricyclo[13.3.0.0^{6,10}]octadecan-8-yl]-1~{H}-purin-6-one"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
GGF  "Create component"  2020-03-20  PDBE  
GGF  "Initial release"   2021-03-31  RCSB  
##
