data_HDF
# 
_chem_comp.id                                    HDF 
_chem_comp.name                                  "8-HYDROXY-10-(D-RIBO-2,3,4,5-TETRAHYDROXYPENTYL)-5-DEAZAISOALLOXAZINE" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C16 H17 N3 O7" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     1999-07-08 
_chem_comp.pdbx_modified_date                    2011-06-04 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        363.322 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     HDF 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        ? 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        1QNF 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
HDF N1     N1   N 0 1 Y N N 42.229 7.131  65.323 2.050  0.633  -0.810 N1     HDF 1  
HDF C2     C2   C 0 1 Y N N 41.672 6.087  66.016 3.197  0.420  -1.446 C2     HDF 2  
HDF O2     O2   O 0 1 N N N 41.134 5.130  65.475 4.232  0.709  -0.872 O2     HDF 3  
HDF N3     N3   N 0 1 Y N N 41.698 6.218  67.371 3.285  -0.093 -2.682 N3     HDF 4  
HDF C4     C4   C 0 1 Y N N 42.240 7.281  68.066 2.176  -0.436 -3.378 C4     HDF 5  
HDF O4     O4   O 0 1 N N N 42.199 7.259  69.289 2.250  -0.902 -4.499 O4     HDF 6  
HDF C4A    C4A  C 0 1 Y N N 42.826 8.283  67.228 0.878  -0.221 -2.721 C4A    HDF 7  
HDF C5     C5   C 0 1 Y N N 43.448 9.297  67.879 -0.320 -0.533 -3.334 C5     HDF 8  
HDF C5A    C5A  C 0 1 Y N N 44.102 10.243 67.173 -1.524 -0.296 -2.635 C5A    HDF 9  
HDF C6     C6   C 0 1 Y N N 44.714 11.229 67.832 -2.758 -0.605 -3.235 C6     HDF 10 
HDF C7     C7   C 0 1 Y N N 45.406 12.161 67.151 -3.918 -0.377 -2.560 C7     HDF 11 
HDF C8     C8   C 0 1 Y N N 45.468 12.069 65.791 -3.894 0.163  -1.272 C8     HDF 12 
HDF O8     O8   O 0 1 N N N 46.291 12.914 65.102 -5.059 0.384  -0.614 O8     HDF 13 
HDF C9     C9   C 0 1 Y N N 44.843 11.078 65.126 -2.691 0.475  -0.663 C9     HDF 14 
HDF C9A    C9A  C 0 1 Y N N 44.144 10.160 65.808 -1.495 0.250  -1.334 C9A    HDF 15 
HDF N10    N10  N 0 1 Y N N 43.504 9.182  65.096 -0.297 0.561  -0.724 N10    HDF 16 
HDF C10    C10  C 0 1 Y N N 42.864 8.245  65.839 0.882  0.351  -1.372 C10    HDF 17 
HDF "C1'"  C1*  C 0 1 N N N 43.085 9.374  63.837 -0.295 1.127  0.627  "C1'"  HDF 18 
HDF "C2'"  C2*  C 0 1 N N R 43.839 8.753  62.655 -0.232 -0.004 1.654  "C2'"  HDF 19 
HDF "O2'"  O2*  O 0 1 N N N 44.993 9.510  62.339 0.961  -0.763 1.453  "O2'"  HDF 20 
HDF "C3'"  C3*  C 0 1 N N S 43.946 7.219  62.413 -0.230 0.587  3.065  "C3'"  HDF 21 
HDF "O3'"  O3*  O 0 1 N N N 43.594 6.390  63.497 0.907  1.437  3.223  "O3'"  HDF 22 
HDF "C4'"  C4*  C 0 1 N N S 45.097 6.506  61.724 -0.167 -0.545 4.092  "C4'"  HDF 23 
HDF "O4'"  O4*  O 0 1 N N N 44.785 6.182  60.380 1.026  -1.304 3.892  "O4'"  HDF 24 
HDF "C5'"  C5*  C 0 1 N N N 46.522 6.928  61.880 -0.164 0.046  5.503  "C5'"  HDF 25 
HDF "O5'"  O5*  O 0 1 N N N 47.386 5.977  61.252 -0.106 -1.011 6.463  "O5'"  HDF 26 
HDF HN3    HN3  H 0 1 N N N 41.278 5.459  67.908 4.159  -0.221 -3.084 HN3    HDF 27 
HDF H5     H5   H 0 1 N N N 43.422 9.352  68.980 -0.335 -0.952 -4.329 H5     HDF 28 
HDF H6     H6   H 0 1 N N N 44.648 11.273 68.932 -2.786 -1.023 -4.230 H6     HDF 29 
HDF H7     H7   H 0 1 N N N 45.909 12.979 67.693 -4.864 -0.615 -3.023 H7     HDF 30 
HDF HO8    HO8  H 0 1 N N N 46.334 12.849 64.155 -5.339 1.283  -0.835 HO8    HDF 31 
HDF H9     H9   H 0 1 N N N 44.903 11.018 64.026 -2.682 0.892  0.332  H9     HDF 32 
HDF "H1'1" 1H1* H 0 0 N N N 42.018 9.056  63.773 -1.206 1.706  0.779  "H1'1" HDF 33 
HDF "H1'2" 2H1* H 0 0 N N N 43.006 10.472 63.660 0.572  1.776  0.747  "H1'2" HDF 34 
HDF "H2'"  H2*  H 0 1 N N N 43.053 8.844  61.869 -1.100 -0.653 1.533  "H2'"  HDF 35 
HDF "HO2'" *HO2 H 0 0 N N N 45.460 9.125  61.606 1.702  -0.153 1.569  "HO2'" HDF 36 
HDF "H3'"  H3*  H 0 1 N N N 43.190 7.343  61.602 -1.140 1.166  3.218  "H3'"  HDF 37 
HDF "HO3'" *HO3 H 0 0 N N N 43.659 5.453  63.349 1.689  0.887  3.080  "HO3'" HDF 38 
HDF "H4'"  H4*  H 0 1 N N N 45.138 5.613  62.390 -1.035 -1.193 3.972  "H4'"  HDF 39 
HDF "HO4'" *HO4 H 0 0 N N N 45.504 5.736  59.949 1.768  -0.694 4.007  "HO4'" HDF 40 
HDF "H5'1" 1H5* H 0 0 N N N 46.695 7.962  61.502 -1.075 0.625  5.656  "H5'1" HDF 41 
HDF "H5'2" 2H5* H 0 0 N N N 46.793 7.097  62.948 0.702  0.694  5.624  "H5'2" HDF 42 
HDF "HO5'" *HO5 H 0 0 N N N 48.291 6.245  61.351 -0.106 -0.596 7.336  "HO5'" HDF 43 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
HDF N1    C2     SING Y N 1  
HDF N1    C10    DOUB Y N 2  
HDF C2    O2     DOUB N N 3  
HDF C2    N3     SING Y N 4  
HDF N3    C4     SING Y N 5  
HDF N3    HN3    SING N N 6  
HDF C4    O4     DOUB N N 7  
HDF C4    C4A    SING Y N 8  
HDF C4A   C5     DOUB Y N 9  
HDF C4A   C10    SING Y N 10 
HDF C5    C5A    SING Y N 11 
HDF C5    H5     SING N N 12 
HDF C5A   C6     DOUB Y N 13 
HDF C5A   C9A    SING Y N 14 
HDF C6    C7     SING Y N 15 
HDF C6    H6     SING N N 16 
HDF C7    C8     DOUB Y N 17 
HDF C7    H7     SING N N 18 
HDF C8    O8     SING N N 19 
HDF C8    C9     SING Y N 20 
HDF O8    HO8    SING N N 21 
HDF C9    C9A    DOUB Y N 22 
HDF C9    H9     SING N N 23 
HDF C9A   N10    SING Y N 24 
HDF N10   C10    SING Y N 25 
HDF N10   "C1'"  SING N N 26 
HDF "C1'" "C2'"  SING N N 27 
HDF "C1'" "H1'1" SING N N 28 
HDF "C1'" "H1'2" SING N N 29 
HDF "C2'" "O2'"  SING N N 30 
HDF "C2'" "C3'"  SING N N 31 
HDF "C2'" "H2'"  SING N N 32 
HDF "O2'" "HO2'" SING N N 33 
HDF "C3'" "O3'"  SING N N 34 
HDF "C3'" "C4'"  SING N N 35 
HDF "C3'" "H3'"  SING N N 36 
HDF "O3'" "HO3'" SING N N 37 
HDF "C4'" "O4'"  SING N N 38 
HDF "C4'" "C5'"  SING N N 39 
HDF "C4'" "H4'"  SING N N 40 
HDF "O4'" "HO4'" SING N N 41 
HDF "C5'" "O5'"  SING N N 42 
HDF "C5'" "H5'1" SING N N 43 
HDF "C5'" "H5'2" SING N N 44 
HDF "O5'" "HO5'" SING N N 45 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
HDF SMILES           ACDLabs              10.04 "O=C1C=3C(=NC(=O)N1)N(c2c(ccc(O)c2)C=3)CC(O)C(O)C(O)CO"                                                                                                     
HDF SMILES_CANONICAL CACTVS               3.341 "OC[C@H](O)[C@@H](O)[C@H](O)CN1c2cc(O)ccc2C=C3C(=O)NC(=O)N=C13"                                                                                             
HDF SMILES           CACTVS               3.341 "OC[CH](O)[CH](O)[CH](O)CN1c2cc(O)ccc2C=C3C(=O)NC(=O)N=C13"                                                                                                 
HDF SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "c1cc2c(cc1O)N(C3=NC(=O)NC(=O)C3=C2)C[C@H]([C@@H]([C@H](CO)O)O)O"                                                                                           
HDF SMILES           "OpenEye OEToolkits" 1.5.0 "c1cc2c(cc1O)N(C3=NC(=O)NC(=O)C3=C2)CC(C(C(CO)O)O)O"                                                                                                        
HDF InChI            InChI                1.03  "InChI=1S/C16H17N3O7/c20-6-12(23)13(24)11(22)5-19-10-4-8(21)2-1-7(10)3-9-14(19)17-16(26)18-15(9)25/h1-4,11-13,20-24H,5-6H2,(H,18,25,26)/t11-,12+,13+/m1/s1" 
HDF InChIKey         InChI                1.03  AUEILLWDYUBWCM-AGIUHOORSA-N                                                                                                                                 
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
HDF "SYSTEMATIC NAME" ACDLabs              10.04 "5-deoxy-5-(8-hydroxy-2,4-dioxo-3,4-dihydropyrimido[4,5-b]quinolin-10(2H)-yl)-D-xylitol" 
HDF "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "8-hydroxy-10-[(2R,3S,4S)-2,3,4,5-tetrahydroxypentyl]pyrimido[6,5-b]quinoline-2,4-dione" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
HDF "Create component"     1999-07-08 RCSB 
HDF "Modify aromatic_flag" 2011-06-04 RCSB 
HDF "Modify descriptor"    2011-06-04 RCSB 
# 
